Lcy08g008410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g008410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Location	Chr08: 14911921 .. 14916950 (+)
RNA-Seq Expression	Lcy08g008410
Synteny	Lcy08g008410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTAAGTCAAGGTTGCTCGGTTTAAATCCCAAGGGCAGCGGAATTTATCAGACCTTTACTCAGATTTTAATTAACAATTAAAATACCAGTACATTGGTTAAAAATATACAGAGACATAATCAAATTATTCTACTGTAACAATACGATTAAGCATGCTGAAAATTAACATAGAATCCCATTCTAAAAATTATACAGAGAAGGGGATTTGAATTACAAACCTCCATTGTCGACTTGATCGAATTTACGCCAACTCTTTGGGAAATCACGAACTCCTTCTCTACTGCAAATCGCACTGAACACCACCAAGATGATCTATTCTAAAAATTATATAGAGAAGGGGATTTGAATTACAAACCTCCATTGTCGACTTAATCGAATTTATGCCTTATCAGGATAAGGTACCCAACCTTATCCCTGTACTATAGACCTTTTAGGTTGTTACTTGAACATTGATCCCCGTATGTCCCCACATACTAGTTCAAGTTACATACAAACAACCTTGGATCTTAGTTGATTGGATTTGGGTCATATTGTGCACTACTTAACAATAACACTTTATTGTAGAAACTCAATAACACTTTATTGAAATAAGTATACAATTTGTTTACATTCACTATCTACGAGTTTTAGGGCATAAAACCCAACAAGTGTCATTACTAAAGAAAAGGATGGGGCTCAAACAATGGATGTTGATGATGAGAGTGAGACATATGGATTTTGAAGGAGTATACGATGCTCGTGCAGAAGCGATTTGGATCAAAAGCCACTCAATTCCATTAGTTTTGCAATTGAAAACATGCATGTATTTTGAACTGAAAACAAAGTAATGGAATTACCAACCTTTGGACATTCAATTTAGCTACACCAATGGATGTTATGGATCACGAACAACTCGTGGATGACCACCAACGTCTTCTTTCTTCGATTTACAGCCTAATTCAACTCTATTGACTCTCAAATTTTTACAGACTCTAGCCAACACATTAATGCCCATAAACATGTAGGCAATTACAATTTAAATCAACGAATTGAACAAGAATTTGATGCCAAAACTGAACTTATCCACTTTAGCTACCAACACAGTTTCATCTCATGAAAATCAACTCACCAAGCTTAAATTAATGAAAATTGAGTTCCCAAATCATGCTCTGATACCAAGGTAGGAGGTGTTCCATAAACCGTCAACTTAAATACCTCCAGCTTTAGATAGCATCTTATTGGGTGAGTTCTCTTGTAACCTTAGCTTTACAAAATATCGACCTATTCTATGCGAATTGTTCGAGTTTGAGGTTCCTTAACCCTAAGTGAGCATGCATTTATCTTGTTATAGATTTTAGCGTCTATCTCGGTTTGATAACGATTATAACATAGACAACCTATAACATTCATCTATGCTAAGGTGGTTTCATGTTGCATGCTTGTTCGTTTTCGTTCATTAATATAACGCTTATACTAATTGAGCTAAAACCAAAAAATTAAAACATTCAACATGCATCTAACATGAAAACCCTAAATCATGCATTCCTTTTATTATAACTCTTATAATATATTACTAATGCATGAAACATGCTTTCCTGTGGTGGGATTTTAAATCTATATGACATACATTATGCATATTCAACATCGATTTAATTTAAACATACATTCACAACGCATAATAAATTAAAACACACTAAAATGGACCGATTTTGGGATCCTAGGAAAGCAATTAACTAAGGCCCCGTTTGATAATCATTTGGTTTTTGGTTTTTTGTTTTTGAAAATTAAGCTTATACACACCTACTTTCACTTATAAGTTTCTTTGTTTTAGTATCAACCTTCTTCCTTGTTTTCAAAAACCAAGTCCAATTTTGAAAAAAAAAAAAAAAAAGTAGTTTTCAAAACCTTGTTTTTGTTGTTGGAATTTGGCTAGGAATTCAAATGGATCCTTAACGAGGATGAAAACCATGGTAGAGAATTTGGCAAAAAACAAGCATAATTTTCAAAAACCAAAAACAAAAAACCAAATGGTTATCAAACGAGGCCTAAATTATTACAAGAATAATTGAAAAACAATTCCGGACCGCTCTCGAACCTTTCGAACCAACTCGAACCAGCTTGAAATTGCAGGAACTAGATCACAAATGGGTTGGAAGGGGCTGAACCGGACTGAACCAAGCTGAAATCAACGAACCGAACTGCTGTAGCTCGAACTGGACCGGACCACCGTTTAAAAAACATGCGCTCTTTGAAAATACATCAGCGTCGAGACGCTGAAGAATAGTGTCTCGATGCTGACCCGTCTGGTTGTGCACTCTGTTTCTTGACCAGCTGAGTTCTTCGTCTTTTTTATAGCTAATATGCATGTCTATCAAGCTTTGTGAATAAGATAGCAAACAAGATTGGAGATTTGTCATGAGGCTTTGGAGGCAATTCAAGAGAATTTCTCTTTGATTTTTTTTTTTTAAAGAAAATTGAAATTAACCACTCAATTACTCAAATTTGTTTTAACACAAATTCAAAATTTGGTTTTTAAATCAATTTTAAATAAGTAACTTAAACAATTTATTATATGTTTAATTTAATGTCAAATGTTAAATTGTTCCACCAATCCCGACTATTCTCTATCTCGTTTTTTCAAATATGAATCAATATTCAAATTCAAATCAACACATGTATCACATACATATTGCAATACTTAAATCACTATTTAAATTTCTCTAACTCTCTCAAAATATAATTTAATCCACGATTAAACTATAACGTTAAACATATCGAATATAAATAACGGGAACTCCATAAATCAAATTTGAACGATTCAAACTCTTTCATCACACTATTCTAAGGTGTACTCAGTATGAGCTACCAGGGGAACCTAATGGACCTACAAATCATGGGCTCCAACGATTCGAGATTATCTGACTAAACTCATTAACCTAGTTAACAACCATTCGTTAACTACTAGGACACTCCACTATAGTCCGATAGCTGCACTTCCCTCACTATAGATATATTTATGTCCACCCGATATAACAATGCTTAGTAAGTCGATCCTTCACAGGTTGTTCGTAACTACAACATGTCAAATGCCTGTTTTACCGCTGAAGTTACTTCTAGTTCCTTAAGTCCCACTGATCCTCTAATGAACAATTGGTTTGTGCTTCAACCAACAAACCTAATCCCTCTTGGGCCAATGAGAGGGTAGGATCCCTTGGTTCAAGCCCCAGAGTCAACACTTAAGGGAACAACCTCTCTACTATCCCTAAAGAGTATATGATAAAGGAACCAAAGATGCTCTGATACCAAACGATAAAAGAACTATCTCAATTACGTTTGAGAACTCCCCTTATTTCAGGTGAACCCCCACAACAATAATAAGAATAACCCCATTAACGAAATGATAGACAACCCCAAGAAAGTTAAATAGATTTGGCTTGGAAGGATGATCAAAGATCAAGAAGAAAGGAGAACTTGTTCCTAACTTCAAGATTTCAAACTCTTCACAATCTAATTGATCAGACTAGATTGAAAGTCCTAGGCATGCATTCTAAACACAAGAACACAAAGAAAACATAAAAGCTTGAGAGAGACTAAACTCAATCTGAAATTTCATTCAAATTCAACTTGTTGTTCAAATGACAAATTACATCCATATTTATACTAATTGAAAAGACACCATGAAAGGATACAACCTTTCACCTATGTAGCCTAGATTCAACCCCCAACCCTTAAAATCCATACATGAACCATCATAAATACAAATACATGAATTAAATAGGTACATAATACATTAAATATGATGGATGAATCTGAATTTTTAGATTCATTATGTCTTTTGGTTGAATAGGTGCCATTGTGAATCTTAAAAGGATGCAACTTTTCACCATAATAATTGGATTGAGCTGGTTCGTCACTTATTTCCTTATCAGTATAGGAGCGAATTCCATCTTGCAGGACTATGTCCCCAGCTATCTACTCGGTCTCATCCCTAAAATGGTAGACTTATTGAGTCGGCGAACTTGGACCACTCTCACCCATGAAAATCAAAGGACAATCCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTTGGTTGTCGCATGAGGTAGTCAGTTTCATCAGTAAACGGCGTTATAAAGTGAAAGTGACTATTCTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGACGCTCTCACTCGCATGTCACCCATGAACGATTCAGGATCACATCATTTGTACTAAATACAAAAAGAGTCGTGTCCATAGTGTCCCCAGGATAAGGTACCCAGCCTTATCCTTATACTATAGGCCGTTTAGGCTATTACTTGAACTTGATCCATTCTTATGTCACTACATAAAGTTCAAGTGTTCATTACATAGCCTAGGGTTCTTAGTTTATTGTATTTGTGGTTATTTAGGCAAGACTAATCAATATAGAATCAATAACGCTTTATTAACAAACAATCATGTGTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAGATTTGCATGTTCATTCTCATGTGTTGAGACTACCACCTTTGATAGAGAATCAAAGATCGATGTGTATTTATTAGAAACTCTTGCTAAGGATGATAGTAGTTTTGACATTCTTAATTGGTGGAAGGATAATGGTCATCAGTTTGAGATTCTCAGTGCAATAAGTAGAGATCTTTTGGCAATTCCAGTTAAAATCGTAGCATTTGAGTTTGCTTTTAGCATTGGAAGACGTGTAGTTGATTCCGCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATCAGTTTTTCAAACTACTAGAGGAAGACTCAACATTGGAAGAAGGTAATGGTTTTACTTTGTTTTCTTTTTTGCTTGATTAATATTTTATTTTCAATCATAAAAGTGTTAATCTATTGTGTATAATTTTGTAGGATTCATAATTGTCATTGATGAAGAAAAGGATGTTGATGAGCTTGACTTTTCGAAGTTGTGA

mRNA sequence

ATGGACCTAAGTCAAGGTTGCTCGGATAATGGTCATCAGTTTGAGATTCTCAGTGCAATAAGTAGAGATCTTTTGGCAATTCCAGTTAAAATCGTAGCATTTGAGTTTGCTTTTAGCATTGGAAGACGTGTAGTTGATTCCGCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATCAGTTTTTCAAACTACTAGAGGAAGACTCAACATTGGAAGAAGGATTCATAATTGTCATTGATGAAGAAAAGGATGTTGATGAGCTTGACTTTTCGAAGTTGTGA

Coding sequence (CDS)

ATGGACCTAAGTCAAGGTTGCTCGGATAATGGTCATCAGTTTGAGATTCTCAGTGCAATAAGTAGAGATCTTTTGGCAATTCCAGTTAAAATCGTAGCATTTGAGTTTGCTTTTAGCATTGGAAGACGTGTAGTTGATTCCGCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATCAGTTTTTCAAACTACTAGAGGAAGACTCAACATTGGAAGAAGGATTCATAATTGTCATTGATGAAGAAAAGGATGTTGATGAGCTTGACTTTTCGAAGTTGTGA

Protein sequence

MDLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALICTQNWLNSNPIDQFFKLLEEDSTLEEGFIIVIDEEKDVDELDFSKL

Homology

[Close]

BLAST of Lcy08g008410 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+      N  ++  LS ++RD+L+IPV   AF++ F +  R +D  ++SL P+TVEALI
Sbjct: 609 DVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALI 668

Query: 62  CTQNWL 68
           C + WL
Sbjct: 669 CAREWL 674

[Close]

BLAST of Lcy08g008410 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 13  QFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALICTQNWL 68
           ++ IL+ I+RD+LAI V  VA E AFS G RVVD  R+ L  + VEALICT++W+
Sbjct: 666 EYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

[Close]

BLAST of Lcy08g008410 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 13  QFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALICTQNWL-NSNP 72
           ++ IL+ I+RD+LAI V  VA E AFS G RVVD  R+ L  + VEALICT++W+  S  
Sbjct: 697 EYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRK 756

Query: 73  IDQFFKLLEEDSTLEEGFIIVIDE-----EKDVDELDFSK 107
              +F  +  D  + +  I          ++D D ++FSK
Sbjct: 757 GATYFPTMIGDLEVLDSVIAAATNHENHMDEDEDAIEFSK 796

[Close]

BLAST of Lcy08g008410 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.8e-07
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 10  NGHQFEILSAISRDLLAIPVKIVAFE---FAFSIGRRVVDSARSSLAPKTVEALICTQNW 69
           N  +F  LS ++RD+LAIP+ +V+     F+   G R++D  RSSL P+ VEAL+C ++W
Sbjct: 642 NTLKFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDW 701

Query: 70  LNSNP 72
           L   P
Sbjct: 702 LQYLP 706

[Close]

BLAST of Lcy08g008410 vs. ExPASy Swiss-Prot
Match: Q0JMB2 (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-06
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIV---AFEFAFSIGRRVVDSARSSLAPKTVE 61
           D+ +   DN  ++  LS ++RD+LAIP+  V   +  F    G R +D  RSSL P+ VE
Sbjct: 612 DVLKWWQDNTLKYPTLSRMARDVLAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVE 671

Query: 62  ALICTQNWLNSNP 72
           AL+C ++WL  +P
Sbjct: 672 ALLCAKDWLQYSP 684

[Close]

BLAST of Lcy08g008410 vs. ExPASy TrEMBL
Match: A0A5A7TBW8 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001520 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV IVA E AFSIG RVVDS+R SLAPKTVEALI
Sbjct: 97  DILQWWKMNSDRFEVLGHMARDILAIPVSIVASESAFSIGGRVVDSSRCSLAPKTVEALI 156

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 157 CTQNWLNSDPIHLQFQHELEEASKFEEGFQVVMENEKELEDLSDFDKL 204

[Close]

BLAST of Lcy08g008410 vs. ExPASy TrEMBL
Match: A0A5A7SRK8 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00140 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-24
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VAFE AFS G RVVDS+R SLAPKTVEALI
Sbjct: 523 DILQWWKMNSDRFEVLGQMARDILAIPVSTVAFESAFSTGGRVVDSSRCSLAPKTVEALI 582

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 583 CTQNWLNSDPIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 630

[Close]

BLAST of Lcy08g008410 vs. ExPASy TrEMBL
Match: A0A5D3DXX1 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00760 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VA E AFS G RV+DS+R SLAPKTVEALI
Sbjct: 97  DILQWWKMNSDRFEVLGQMARDILAIPVSTVASESAFSTGGRVIDSSRCSLAPKTVEALI 156

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNSNPI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 157 CTQNWLNSNPIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 204

[Close]

BLAST of Lcy08g008410 vs. ExPASy TrEMBL
Match: A0A5D3D9R3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00310 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VA E AFSIG RVVDS+R SLAPKTVEALI
Sbjct: 97  DILQWWKMNSDRFEVLGHMARDILAIPVSTVASESAFSIGGRVVDSSRCSLAPKTVEALI 156

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 157 CTQNWLNSDPIHLQFQHELEEASKFEEGFQVVMENEKELEDLSDFDKL 204

[Close]

BLAST of Lcy08g008410 vs. ExPASy TrEMBL
Match: A0A5D3CXI1 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004160 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.6e-23
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VA E AFS G RVVDS+R SLAPKTVEALI
Sbjct: 506 DILQWWKMNSDRFEVLGQMARDILAIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALI 565

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 566 CTQNWLNSDPIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 613

[Close]

BLAST of Lcy08g008410 vs. NCBI nr
Match: KAA0040954.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.5e-24
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV IVA E AFSIG RVVDS+R SLAPKTVEALI
Sbjct: 97  DILQWWKMNSDRFEVLGHMARDILAIPVSIVASESAFSIGGRVVDSSRCSLAPKTVEALI 156

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 157 CTQNWLNSDPIHLQFQHELEEASKFEEGFQVVMENEKELEDLSDFDKL 204

[Close]

BLAST of Lcy08g008410 vs. NCBI nr
Match: KAA0033842.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VAFE AFS G RVVDS+R SLAPKTVEALI
Sbjct: 523 DILQWWKMNSDRFEVLGQMARDILAIPVSTVAFESAFSTGGRVVDSSRCSLAPKTVEALI 582

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 583 CTQNWLNSDPIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 630

[Close]

BLAST of Lcy08g008410 vs. NCBI nr
Match: KAA0048472.1 (transposase [Cucumis melo var. makuwa] >TYK28268.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-23
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VA E AFS G RV+DS+R SLAPKTVEALI
Sbjct: 97  DILQWWKMNSDRFEVLGQMARDILAIPVSTVASESAFSTGGRVIDSSRCSLAPKTVEALI 156

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNSNPI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 157 CTQNWLNSNPIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 204

[Close]

BLAST of Lcy08g008410 vs. NCBI nr
Match: TYK20303.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-23
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VA E AFSIG RVVDS+R SLAPKTVEALI
Sbjct: 97  DILQWWKMNSDRFEVLGHMARDILAIPVSTVASESAFSIGGRVVDSSRCSLAPKTVEALI 156

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 157 CTQNWLNSDPIHLQFQHELEEASKFEEGFQVVMENEKELEDLSDFDKL 204

[Close]

BLAST of Lcy08g008410 vs. NCBI nr
Match: TYK23433.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-23
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+ Q    N  +FE+L  ++RD+LAIPV  VA E AFS G RVVDS+R SLAPKTVEALI
Sbjct: 439 DILQWWKMNSDRFEVLGQMARDILAIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALI 498

Query: 62  CTQNWLNSNPID-QFFKLLEEDSTLEEGFIIVIDEEKDVDEL-DFSKL 108
           CTQNWLNS+PI  QF   LEE S  EEGF +V++ EK++++L DF KL
Sbjct: 499 CTQNWLNSDPIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 546

[Close]

BLAST of Lcy08g008410 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 2   DLSQGCSDNGHQFEILSAISRDLLAIPVKIVAFEFAFSIGRRVVDSARSSLAPKTVEALI 61
           D+      N  ++  LS ++RD+L+IPV   AF++ F +  R +D  ++SL P+TVEALI
Sbjct: 609 DVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALI 668

Query: 62  CTQNWL 68
           C + WL
Sbjct: 669 CAREWL 674

The following BLAST results are available for this feature:

BLAST of Lcy08g008410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2N5	3.1e-08	40.91	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]
P03010	3.1e-08	54.55	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]
P08770	4.0e-08	39.00	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
Q6AVI0	9.8e-07	43.08	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
Q0JMB2	2.9e-06	39.73	Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. j...	[more]

BLAST of Lcy08g008410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBW8	4.1e-24	62.04	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001520 P...	[more]
A0A5A7SRK8	5.4e-24	61.11	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3DXX1	1.6e-23	60.19	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00760 PE...	[more]
A0A5D3D9R3	1.6e-23	61.11	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00310 PE...	[more]
A0A5D3CXI1	4.6e-23	60.19	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of Lcy08g008410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040954.1	8.5e-24	62.04	transposase [Cucumis melo var. makuwa]	[more]
KAA0033842.1	1.1e-23	61.11	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
KAA0048472.1	3.2e-23	60.19	transposase [Cucumis melo var. makuwa] >TYK28268.1 transposase [Cucumis melo var...	[more]
TYK20303.1	3.2e-23	61.11	transposase [Cucumis melo var. makuwa]	[more]
TYK23433.1	9.4e-23	60.19	putative transposase [Cucumis melo var. makuwa]	[more]

BLAST of Lcy08g008410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	2.2e-09	40.91	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 9..67 e-value: 1.7E-15 score: 56.6
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 13..67
None	No IPR available	PANTHER	PTHR23272:SF137	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE	coord: 13..67
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g008410.1	Lcy08g008410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity