Lcy08g008360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g008360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr08: 14654393 .. 14657245 (-)
RNA-Seq Expression	Lcy08g008360
Synteny	Lcy08g008360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCAAAAAATCGAATGGAAAAAACCATGTACCTAATTTGGAGCAAGAGGTTTCCCAGCCAAAGAGCGCGATCGTCGTCTGGACTCCCCCTTCTGAAAACTTCTGGAAAATGAATGCTGATGCTTCATGGGGTTCTCATCCTCCATCGACTGGTGTTGGTATCGTGTTTAGGGATTCTGAGGGCTCCATTAAGGGAGCAAAAGGTTCTTTCGTTGACGTGGAATATTTGGGCCCAAATGTTGAATTATGGGCCATAGTGGAGGGTTTAAAGCTGGCAATAAGTTTGGGTTGTGAGAAATTGTTGGTTGAATCTGATAGCATGGTGGCCATAAATCTCATCACAAAGAAATCTGATCAATGGGGAGATGCTGAGATTTTTCTTGACTTAATCTGGGCAATGATCCCATCCTTTAGAGAAATTAAATTCTGTCATATCTCAAGATCTTGTAATATGGTAGCGGATTTTATAGCAAAAAGAGCTGAGAGTATAGAGTTAGTGAGTCTTGGGTTCATTCTATCCCAAGTTGGTTGTGTATGTTGGTCGATTCTGACCTTTCTTCGTTTGCCCATGTGGCGTTATAAATTTTTTTCTTTTCTAAAAAAAACCCCTATAACTGAATCATATTCAATTATATTTTTCTCATATAACCTATAGTTTTAATATGAATCTAATTCATATTAAAATTTAATATTTGTTCAAATATTTAATTCTCCCACAAATTAATTTTGAATCAATATTCAAAATAACTTTATATTATAAAGTTTAATAAAAAAAATATATAAACTTTATATTATAATGTATCACATACATTATACTATTTTCCTTAGTAAATTTGAACATTTCAAATTACATAAATTACCTCAATACCCTTTATGGGCTACCAATGGGACCTAATGGACCTACATATCAGAAGCTCCAACGATATGAGATTAATTGACTAAACTCATTAACCAACTTAACCAATATTCGTTAACTGTGGATACACTCCACTATAGACCCACAGTTGCACTCTTCTCACTGAATATATATTTTTGTGTCCACGGATATCACCAATTGCAGCAAGTTAGTCCTTCACGAGTGTTCGTAACACCAGCTGGGTCAAATTATCGTTTTACCCCTGGGTTACCTCTACATCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTATTTGAGGTCCAACCAACAAACATAAATCTCTCTCGTGCCATAGAGAGGGTAGGACCCTTTGTTCAAGACCTGGAGACACCACTTAAGGGAACACTCATCTACTTACTCTAAAGTCGGGAAGGAGTGAATTTCATCTTGTTTGATTATGTTTCCAGCTCCCCACTCGGTCTTGTCCCAAAATGGTAAGCTTATTGAGTCGACGTACAGGCCACTCTCACTCATACAAATCAAAGGACAATCTCTCGTGAACAGGAGTTCATAACCCACTCAGGATTGAGACTAAGTTGCCTAAGTCATCCTAGTGAAATAGAAACCTAACTAGTCAACAGTGCTACAACTAGTGGTTACTATTTCGCAGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCCACTCGCATGTCCTCTACACGAACGCGTTGGATCATTGCGTTTGTATCAAATATAAAGCGGGTCGTATCCATAGTGTCACCAGGATAAGGCACCCAGCCTTATCCCTATACTATAGACCCTTTAGGCTATATCTTGAACAATGATCCTCGTATGTCCCCACATACAGTTCAAGACTCATATAACAGCCTAGGATGTTAGTTTATTGGATTAGGGTTATTTAGGCAAGACAAACATAATACAAACAATAATACTTTATTGAATAATACATCAATAACATTTTGTTAATGTTCGGTCAAATATTACATTTATTATCTACGAGTTTTAGGGCATAAAACCCAACAATATGAAATTAATTCAAATAATTAATTTCAAATAAAATTAATTTAATTTAAATTAAATATTTTAATTTAATTTAATAATTATTTAATCAAATTAAATAGGGTAAAATACATTTTTGGTCCCTCATGTTTGAGGTTCATTTTCAATAGGTCCCTAGGTTTCAAAATCGGACAATCAAGTCCCTTACTGTTTTGAAAATGCTTCTATTAAGTCCCTCCACCGTTAATTTTTTTTAACGGTGCTGACGTGGCAGTTAAAAAAATAAAATATTAATTTTTAAATCAAAATAATAATAATAATAATAATAATTTTTACAAAATACTCTCTCTCCTCTCTCCCCTACCCCCCCCCCACGAAACCCTCGTTTCTTTCCTTTTTTCCCTTCTTTCCCCCTCATTTCCCTTTGTCGTCGCCACCACCCTTGACCTCCGACGACAACGAAATCCATTCCCTTTCTTTCTCCCCCCTTCCTCTTGTCGTCGTCGCCGCCCTCGACCTCTGACGTCGTCGACGAAACCCATTCCCTTTCTTTCCCTTCCTTAACCCCTTATTTCCCTCATTGTCGCCGCCGCCCTCAACCTTTGACGCCGACAACGAAACCCATTCCCTTTCTTTCCCTTCCTTTCCCCCATATTTCCCTTGTCACCACGGCCCTCGACCTTCAACATCGTTTGAGATTGTTGGGTTTTTTTTGTCTCTTAGATCTGGAATTATTAATGTGAAGGTGGTTTTTTTTTTTTTTTTTTAAGATTGAAGTAGGGAGAGGGGTTTGGGAGAAAAGATGGGGCTAGATTGAAGTAGGGAGAGGGATTTGGGGAAGAAGATGAGAGGTTTTTTTAGATTGAAGAAGATGAAATGGTGGGTTGGGTTTTTTTAGTTTGAAGAGGAAGTGATGGATTTGTTGAGGAAGATGAAGATAGGGGAGGAGGGTTTTACAGATTAA

mRNA sequence

ATGGAAATCAAAAAATCGAATGGAAAAAACCATGTACCTAATTTGGAGCAAGAGGTTTCCCAGCCAAAGAGCGCGATCGTCGTCTGGACTCCCCCTTCTGAAAACTTCTGGAAAATGAATGCTGATGCTTCATGGGGTTCTCATCCTCCATCGACTGGTGTTGGTATCGTGTTTAGGGATTCTGAGGGCTCCATTAAGGGAGCAAAAGGTTCTTTCGTTGACGTGGAATATTTGGGCCCAAATGTTGAATTATGGGCCATAGTGGAGGGTTTAAAGCTGGCAATAAGTTTGGGTTGTGAGAAATTGTTGGTTGAATCTGATAGCATGGTGGCCATAAATCTCATCACAAAGAAATCTGATCAATGGGGAGATGCTGAGATTTTTCTTGACTTAATCTGGGCAATGATCCCATCCTTTAGAGAAATTAAATTCTGTCATATCTCAAGATCTTGTAATATGGTAGCGGATTTTATAGCAAAAAGAGCTGAGAGTATAGAGTTATTTGAAGAGGAAGTGATGGATTTGTTGAGGAAGATGAAGATAGGGGAGGAGGGTTTTACAGATTAA

Coding sequence (CDS)

ATGGAAATCAAAAAATCGAATGGAAAAAACCATGTACCTAATTTGGAGCAAGAGGTTTCCCAGCCAAAGAGCGCGATCGTCGTCTGGACTCCCCCTTCTGAAAACTTCTGGAAAATGAATGCTGATGCTTCATGGGGTTCTCATCCTCCATCGACTGGTGTTGGTATCGTGTTTAGGGATTCTGAGGGCTCCATTAAGGGAGCAAAAGGTTCTTTCGTTGACGTGGAATATTTGGGCCCAAATGTTGAATTATGGGCCATAGTGGAGGGTTTAAAGCTGGCAATAAGTTTGGGTTGTGAGAAATTGTTGGTTGAATCTGATAGCATGGTGGCCATAAATCTCATCACAAAGAAATCTGATCAATGGGGAGATGCTGAGATTTTTCTTGACTTAATCTGGGCAATGATCCCATCCTTTAGAGAAATTAAATTCTGTCATATCTCAAGATCTTGTAATATGGTAGCGGATTTTATAGCAAAAAGAGCTGAGAGTATAGAGTTATTTGAAGAGGAAGTGATGGATTTGTTGAGGAAGATGAAGATAGGGGAGGAGGGTTTTACAGATTAA

Protein sequence

MEIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEGSIKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSDQWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIELFEEEVMDLLRKMKIGEEGFTD

Homology

[Close]

BLAST of Lcy08g008360 vs. ExPASy TrEMBL
Match: A0A445DPD5 (RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011030 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 57/167 (34.13%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q+ S    +IV W  P+  + K+N D SW +H  +   G VFRDS
Sbjct: 614 EFLKVATSNLKPKNNQDTS---GSIVRWVRPNGEYIKLNVDGSWFAHRSNAACGGVFRDS 673

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  +KG  G+  +   +  + ELWAIV GL +AI+ G + L+VESDS+ AIN I   S 
Sbjct: 674 AGRFLKGFAGNLGNCSIM--HAELWAIVHGLTIAITHGYQNLMVESDSVAAINFIKNGSS 733

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  +  +    +++ + H+ R  N VAD +AK+   + L
Sbjct: 734 PGHHCAPLIQDVRVLTERLKKVSWIHVFREANTVADQLAKKGHDLPL 775

[Close]

BLAST of Lcy08g008360 vs. ExPASy TrEMBL
Match: A0A445DX69 (RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g014197 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.2e-15
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q  S+    +V W+ P+  + K+N D SW +H  +   G +FRDS
Sbjct: 70  EFLKVANSNLNPRNNQATSR---CLVRWSRPTGEYIKLNMDGSWFAHRSNAACGGIFRDS 129

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  ++G  G+  +   +  +VELWAIV GL +A + G + L+VESDS+ AIN I   S 
Sbjct: 130 AGRYLEGFVGNLGNCSIM--HVELWAIVHGLTIATTHGYQNLVVESDSVAAINFIKNGSS 189

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  I  +    +++ + HI R  NMVAD +AK+   + L
Sbjct: 190 PGHHCAPLIQDIRVLAGRLQQVSWMHIFREANMVADQLAKKGHDLPL 231

[Close]

BLAST of Lcy08g008360 vs. ExPASy TrEMBL
Match: A0A445E9T0 (RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g006258 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q+ S    +I+ W  P+  + K+N D SW +H  +   G VFRDS
Sbjct: 354 EFLKVATSNLKPKNNQDTS---GSIIRWVRPNGEYIKLNVDGSWFAHRSNAACGGVFRDS 413

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  + G  G+  +   +  + ELWAIV GL +AI+ G + L+VESDS+ AIN I   S 
Sbjct: 414 AGRYLIGFAGNLGNCSIM--HAELWAIVHGLTIAITHGYQNLMVESDSVAAINFIKNGSS 473

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  +  +    +++ + H+ R  N VAD +AK+   + L
Sbjct: 474 SGHHCAPLIQDVRVLTERLKKVSWIHVFREANTVADQLAKKGHDLPL 515

[Close]

BLAST of Lcy08g008360 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-14
Identity = 47/142 (33.10%), Postives = 75/142 (52.82%), Query Frame = 0


Query: 29  WTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEGSIKGAKGSFVDVEYLGPNVELWAIV 88
           W PP+ N WK+N +A+W +   + G+G + RD +G +  A    +  E     +E+ AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 89  EGLKLAISLGCEKLLVESDSMVAINLITKKSDQWGDAEIFLDLIWAMIPSFREIKFCHIS 148
           EGL+      C  + +ESDS+ AI+L+ ++     +    L+ IW M+     +   HIS
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHIS 198

Query: 149 RSCNMVADFIAKRAESIELFEE 171
           R  N VA  +A+RA   +L EE
Sbjct: 199 REANKVAHGLARRAMENDLREE 220

[Close]

BLAST of Lcy08g008360 vs. ExPASy TrEMBL
Match: A0A444YVC1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g085655 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 0


Query: 2    EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
            E  K    N  P   Q+ S     +V W+ P  +  K+N D SW +H  +   G VFRDS
Sbjct: 893  EFLKVANSNLNPRNNQDTS---GYLVRWSRPKGDCIKLNVDGSWYNHRSNAACGGVFRDS 952

Query: 62   EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
             G  +KG  G+  +   +  + ELWAI+ GL +A   G + L+VESDS  AI+ I   S 
Sbjct: 953  AGRYLKGFSGNLGNCSIM--HAELWAIIHGLNIATRNGYQNLVVESDSAAAIDFIKNGSF 1012

Query: 122  QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                    +  I  +    +++ + H+ R  NMVAD +AK+ + + L
Sbjct: 1013 PGHHCAPLIQDIRVLAARIQQVSWVHVFREANMVADQLAKKGQDLPL 1054

[Close]

BLAST of Lcy08g008360 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-15
Identity = 46/133 (34.59%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 29  WTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEGSIKGAKGSFVDVEYLGPNVELWAIV 88
           W+ P  +F K+N DA+W   P S+G   + RD++GS+K  + S +D  Y  P  E + ++
Sbjct: 56  WSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFVVL 115

Query: 89  EGLKLAISLGCEKLLVESDSMVAINLITKKSDQWGDAEIFLDLIWAMIPSFREIKFCHIS 148
           +GL+L   +  +K++V+SD   AI+L  K         ++L+ IW +   F  I F +I 
Sbjct: 116 QGLRLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRVWLEEIWEISIVFYPINFAYIP 175

Query: 149 RSCNMVADFIAKR 162
           R+ N +AD +AKR
Sbjct: 176 RNINKLADIVAKR 188

[Close]

BLAST of Lcy08g008360 vs. NCBI nr
Match: RYR65033.1 (hypothetical protein Ahy_A03g011030 [Arachis hypogaea])

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-15
Identity = 57/167 (34.13%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q+ S    +IV W  P+  + K+N D SW +H  +   G VFRDS
Sbjct: 614 EFLKVATSNLKPKNNQDTS---GSIVRWVRPNGEYIKLNVDGSWFAHRSNAACGGVFRDS 673

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  +KG  G+  +   +  + ELWAIV GL +AI+ G + L+VESDS+ AIN I   S 
Sbjct: 674 AGRFLKGFAGNLGNCSIM--HAELWAIVHGLTIAITHGYQNLMVESDSVAAINFIKNGSS 733

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  +  +    +++ + H+ R  N VAD +AK+   + L
Sbjct: 734 PGHHCAPLIQDVRVLTERLKKVSWIHVFREANTVADQLAKKGHDLPL 775

[Close]

BLAST of Lcy08g008360 vs. NCBI nr
Match: RYR67776.1 (hypothetical protein Ahy_A03g014197 [Arachis hypogaea])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q  S+    +V W+ P+  + K+N D SW +H  +   G +FRDS
Sbjct: 70  EFLKVANSNLNPRNNQATSR---CLVRWSRPTGEYIKLNMDGSWFAHRSNAACGGIFRDS 129

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  ++G  G+  +   +  +VELWAIV GL +A + G + L+VESDS+ AIN I   S 
Sbjct: 130 AGRYLEGFVGNLGNCSIM--HVELWAIVHGLTIATTHGYQNLVVESDSVAAINFIKNGSS 189

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  I  +    +++ + HI R  NMVAD +AK+   + L
Sbjct: 190 PGHHCAPLIQDIRVLAGRLQQVSWMHIFREANMVADQLAKKGHDLPL 231

[Close]

BLAST of Lcy08g008360 vs. NCBI nr
Match: QHO25231.1 (Putative ribonuclease H protein [Arachis hypogaea])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-14
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q+ S    +I+ W  P+  + K+N D SW +H  +   G VFRDS
Sbjct: 602 EFLKVATSNLKPKNNQDTS---GSIIRWVRPNGEYIKLNVDGSWFAHRSNAACGGVFRDS 661

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  + G  G+  +   +  + ELWAIV GL +AI+ G + L+VESDS+ AIN I   S 
Sbjct: 662 AGRYLIGFAGNLGNCSIM--HAELWAIVHGLTIAITHGYQNLMVESDSVAAINFIKNGSS 721

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  +  +    +++ + H+ R  N VAD +AK+   + L
Sbjct: 722 SGHHCAPLIQDVRVLTERLKKVSWIHVFREANTVADQLAKKGHDLPL 763

[Close]

BLAST of Lcy08g008360 vs. NCBI nr
Match: RYR72069.1 (hypothetical protein Ahy_A02g006258 [Arachis hypogaea])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-14
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 2   EIKKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDS 61
           E  K    N  P   Q+ S    +I+ W  P+  + K+N D SW +H  +   G VFRDS
Sbjct: 354 EFLKVATSNLKPKNNQDTS---GSIIRWVRPNGEYIKLNVDGSWFAHRSNAACGGVFRDS 413

Query: 62  EGS-IKGAKGSFVDVEYLGPNVELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSD 121
            G  + G  G+  +   +  + ELWAIV GL +AI+ G + L+VESDS+ AIN I   S 
Sbjct: 414 AGRYLIGFAGNLGNCSIM--HAELWAIVHGLTIAITHGYQNLMVESDSVAAINFIKNGSS 473

Query: 122 QWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIEL 168
                   +  +  +    +++ + H+ R  N VAD +AK+   + L
Sbjct: 474 SGHHCAPLIQDVRVLTERLKKVSWIHVFREANTVADQLAKKGHDLPL 515

[Close]

BLAST of Lcy08g008360 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 0


Query: 29  WTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEGS-IKGAKGSF---VDVEYLGPNVEL 88
           W+PP  +  K N DAS       +G+G + R+S+G+ I+   G F   +  E    +  +
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

Query: 89  WAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSDQWGDAEIFLDLIWAMIPSFREIKF 148
           WAI    + +   G +K++ E D+     +I  KS      + FLD I + IPSF  I+F
Sbjct: 165 WAI----QASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEF 224

Query: 149 CHISRSCNMVADFIAKRA 163
               R  N  ADF+AK+A
Sbjct: 225 SFKHREQNGCADFLAKQA 237

[Close]

BLAST of Lcy08g008360 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-09
Identity = 45/177 (25.42%), Postives = 81/177 (45.76%), Query Frame = 0


Query: 4   KKSNGKNHVPNLEQEVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEG 63
           ++  GK   P +E+ +S      V W  P   + K N DA+W    P  G+G + R+  G
Sbjct: 118 RELEGKASGPQVERNLS------VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESG 177

Query: 64  SI--KGAKGSFVDVEYLGPNVEL--WAIVEGLKLAISLGCEKLLVESDSMVAINLITKKS 123
            +   GA+        L   +E   WA++   +       ++++ ESD+   +NL+    
Sbjct: 178 GVLWMGARALPRTKNVLEAELEALRWAVLTMSR----FNYKRIIFESDAQALVNLL-NSD 237

Query: 124 DQWGDAEIFLDLIWAMIPSFREIKFCHISRSCNMVADFIAKRAESIELFEEEVMDLL 177
           D W   +  L+ I  ++  F E+KF    R  N VAD IA+ + S   ++ ++  ++
Sbjct: 238 DFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFSNYDPKLFSIV 283

[Close]

BLAST of Lcy08g008360 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07
Identity = 37/152 (24.34%), Postives = 71/152 (46.71%), Query Frame = 0


Query: 29  WTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEGSIK--GAKGSFVDVEYLGPNVEL-- 88
           W PP   + K N DA+W       G+G V R+ +G +K  GA+        L   +E   
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479

Query: 89  WAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSDQWGDAEIFLDLIWAMIPSFREIKF 148
           WA++   +   +     ++ ESDS V I ++    + W   +  +  +  ++  F E+KF
Sbjct: 480 WAVLSLSRFQYNY----VIFESDSQVLIEIL-NNDEIWPSLKPTIQDLQRLLSQFTEVKF 539

Query: 149 CHISRSCNMVADFIAKRAESIELFEEEVMDLL 177
             I R  N +A+ +A+ + S   ++ ++  ++
Sbjct: 540 VFIPREGNTLAERVARESLSFLNYDPKLYSIV 566

[Close]

BLAST of Lcy08g008360 vs. TAIR 10
Match: AT5G61090.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 50/173 (28.90%), Postives = 74/173 (42.77%), Query Frame = 0


Query: 18  EVSQPKSAIVVWTPPSENFWKMNADASWGSHPPSTGVGIVFRDSEGSIKGAKGSFVDVEY 77
           E S P     +WTPP     K+N   +       T    + RD  G  K   G ++    
Sbjct: 488 EASVPPGFEKIWTPP---LVKLNIQGTSNPLSDLTRSAGIVRDQSG--KWVFG-YIRCHK 547

Query: 78  LGPNV--ELWAIVEGLKLAISLGCEKLLVESDSMVAINLITKKSDQWGDAEIFLDLIWAM 137
             P V   L AI +GLK     G  ++ +E+ S   IN +T KS  +  ++  L     M
Sbjct: 548 SIPEVVAGLLAIYQGLKYLWDSGFRRIHLETTSFEIINALTTKSSLFCKSKTLLGACKDM 607

Query: 138 IPSFREIKFCHISRSCNMVADFIAKRAE----SIELFE---EEVMDLLRKMKI 182
           I    E    HIS+  N  A+++AKR+E     +  FE     +MD L K ++
Sbjct: 608 ILKEWECDIYHISKEQNSCAEWLAKRSEEQPQELVFFEYPPRGLMDFLEKDRL 654

The following BLAST results are available for this feature:

BLAST of Lcy08g008360 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g008360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445DPD5	2.1e-15	34.13	RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011030 ...	[more]
A0A445DX69	6.2e-15	34.13	RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g014197 ...	[more]
A0A445E9T0	1.8e-14	32.93	RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g006258 ...	[more]
A0A6J1CP26	5.2e-14	33.10	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A444YVC1	1.5e-13	32.93	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g085655 PE=4 SV=1	[more]

BLAST of Lcy08g008360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902513.1	4.4e-15	34.59	uncharacterized protein LOC120089172 [Benincasa hispida]	[more]
RYR65033.1	4.4e-15	34.13	hypothetical protein Ahy_A03g011030 [Arachis hypogaea]	[more]
RYR67776.1	1.3e-14	34.13	hypothetical protein Ahy_A03g014197 [Arachis hypogaea]	[more]
QHO25231.1	3.7e-14	32.93	Putative ribonuclease H protein [Arachis hypogaea]	[more]
RYR72069.1	3.7e-14	32.93	hypothetical protein Ahy_A02g006258 [Arachis hypogaea]	[more]

BLAST of Lcy08g008360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65005.1	2.0e-10	32.61	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G34320.1	1.7e-09	25.42	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	1.2e-07	24.34	Ribonuclease H-like superfamily protein	[more]
AT5G61090.1	2.0e-05	28.90	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 40..162 e-value: 2.9E-24 score: 85.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 36..164 e-value: 1.5E-16 score: 62.7
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 20..164
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 40..160 e-value: 3.6643E-28 score: 100.081
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 36..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g008360.1	Lcy08g008360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity