Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCCTCTTTGCTATGCTAAAAGCAGCTCGATCCCGAACGCTTTCAGGTATAGCTATCGCGAGATCTTGCCCAAGCGTTACTCATTTATTCTTTGCGGATGACAGTTTGGTATTTCTTAAGGCTACAATAGAGGAGTTTGGGACTTTTAGGAAAATTATGTTGGATTATGAAAAAGTCTTTGGTCAGTGTATCAACCTAAATAAATCAATGGTGTATTTCTCAAAGAATGTGCCTGTTGACACTAGTGTTTGTCTCAGTAATATGATGGGTATGCGAATGATTGATTCCTTTGGCCCTTACCTTGGTTTGCCTTCAACTTTCCACCGGGGTAAAACCAAAGATTTTCAGTTCTTACTTGATAAAGTGTGGGCAATTCTCCAAGGTTGGGAAGGCAGCTTATTTTCAAAAGGTGGGAAGGAGGTGTTGGTCAAGAGTGTTATCCAAGTTATTCCTACCTATGCAATGGGATGTTTTCGGATTCCCAAAAGCATTCTCACAAAAATCTCGACATTATGTGCCAAAATTTGGTGGGGTGCGAATGGGGATAAGCGGAAGATGCACTAG
mRNA sequence
ATGGGAGGCCTCTTTGCTATGCTAAAAGCAGCTCGATCCCGAACGCTTTCAGGTATAGCTATCGCGAGATCTTGCCCAAGCGTTACTCATTTATTCTTTGCGGATGACAGTTTGGTATTTCTTAAGGCTACAATAGAGGAGTTTGGGACTTTTAGGAAAATTATGTTGGATTATGAAAAAGTCTTTGGTCAGTGTATCAACCTAAATAAATCAATGGTGTATTTCTCAAAGAATGTGCCTGTTGACACTAGTGTTTGTCTCAGTAATATGATGGGTATGCGAATGATTGATTCCTTTGGCCCTTACCTTGGTTTGCCTTCAACTTTCCACCGGGGTAAAACCAAAGATTTTCAGTTCTTACTTGATAAAGTGTGGGCAATTCTCCAAGGTTGGGAAGGCAGCTTATTTTCAAAAGGTGGGAAGGAGGTGTTGGTCAAGAGTGTTATCCAAGTTATTCCTACCTATGCAATGGGATGTTTTCGGATTCCCAAAAGCATTCTCACAAAAATCTCGACATTATGTGCCAAAATTTGGTGGGGTGCGAATGGGGATAAGCGGAAGATGCACTAG
Coding sequence (CDS)
ATGGGAGGCCTCTTTGCTATGCTAAAAGCAGCTCGATCCCGAACGCTTTCAGGTATAGCTATCGCGAGATCTTGCCCAAGCGTTACTCATTTATTCTTTGCGGATGACAGTTTGGTATTTCTTAAGGCTACAATAGAGGAGTTTGGGACTTTTAGGAAAATTATGTTGGATTATGAAAAAGTCTTTGGTCAGTGTATCAACCTAAATAAATCAATGGTGTATTTCTCAAAGAATGTGCCTGTTGACACTAGTGTTTGTCTCAGTAATATGATGGGTATGCGAATGATTGATTCCTTTGGCCCTTACCTTGGTTTGCCTTCAACTTTCCACCGGGGTAAAACCAAAGATTTTCAGTTCTTACTTGATAAAGTGTGGGCAATTCTCCAAGGTTGGGAAGGCAGCTTATTTTCAAAAGGTGGGAAGGAGGTGTTGGTCAAGAGTGTTATCCAAGTTATTCCTACCTATGCAATGGGATGTTTTCGGATTCCCAAAAGCATTCTCACAAAAATCTCGACATTATGTGCCAAAATTTGGTGGGGTGCGAATGGGGATAAGCGGAAGATGCACTAG
Protein sequence
MGGLFAMLKAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINLNKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAILQGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKMH
Homology
BLAST of Lcy08g008210 vs. ExPASy TrEMBL
Match:
A0A2K3PIK7 (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g011801 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 4.1e-43
Identity = 81/181 (44.75%), Postives = 119/181 (65.75%), Query Frame = 0
Query: 9 KAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINL 68
K A + ++ GI IAR P ++HLFFADDSL+F +A+ E G ++ +Y+K GQ +NL
Sbjct: 632 KQAETGSMHGIQIARQAPKISHLFFADDSLLFARASAAEAGVILNVLAEYQKASGQVVNL 691
Query: 69 NKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAIL 128
+KS V FS+NV + + N MG++ +D+ YLGLP F R K F F++D+VW L
Sbjct: 692 DKSEVSFSQNVRNEDKDMIRNRMGVKTVDTHSKYLGLPVVFGRSKKIIFSFVIDRVWKKL 751
Query: 129 QGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKM 188
+GW+ S+ GKE+L+K+V Q IP Y MGC+++P S +I T+ AK WWG+ G +RK+
Sbjct: 752 KGWKEKCLSRAGKEILIKAVAQAIPNYIMGCYKLPNSCCQEIETMLAKFWWGSKGGERKI 811
Query: 189 H 190
H
Sbjct: 812 H 812
BLAST of Lcy08g008210 vs. ExPASy TrEMBL
Match:
A0A803PWX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 84/180 (46.67%), Postives = 119/180 (66.11%), Query Frame = 0
Query: 10 AARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINLN 69
A S L GI R SV+HLFFADDSLVFL A +E F++++ Y K GQ +N +
Sbjct: 1206 AEHSGQLHGIGFGRQGVSVSHLFFADDSLVFLAANEDECKGFKELLEKYSKASGQLVNFH 1265
Query: 70 KSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAILQ 129
KS + F + V + L+N+MG++++D++G YLGLPS R K + F+F+ +KVW L+
Sbjct: 1266 KSEMCFGRKVTLPVRTHLANIMGVKVVDNYGKYLGLPSFVGRTKKQHFEFIKNKVWNKLK 1325
Query: 130 GWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKMH 189
GW+GS FS GKEVL+K+VIQ IPTY M CFR+PK + I ++ A+ WWG++ K+H
Sbjct: 1326 GWKGSFFSAAGKEVLIKAVIQAIPTYTMSCFRLPKKTINSIHSMAARFWWGSSEKDSKIH 1385
BLAST of Lcy08g008210 vs. ExPASy TrEMBL
Match:
A0A2N9G258 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21302 PE=3 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 81/174 (46.55%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 16 LSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINLNKSMVYF 75
L G++I+R P +THLFFADDSL+F KAT + + I+ YEK GQ IN K+ ++F
Sbjct: 1106 LKGVSISRGGPKITHLFFADDSLLFCKATTGDVNRIQGILSQYEKASGQQINRQKTTLFF 1165
Query: 76 SKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAILQGWEGSL 135
SK+ P + NM+G+ I + YLGLPS R K F + ++VW+ L+GW+ L
Sbjct: 1166 SKSTPHSAKSAIQNMLGVPAIKQYERYLGLPSFIGRAKYSSFAQIKERVWSKLKGWKEKL 1225
Query: 136 FSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKMH 190
S+ GKE+L+KSV Q IP YAM CFR+P ++ +I L + WWG NGDK KMH
Sbjct: 1226 ISQAGKEILIKSVAQAIPAYAMSCFRLPNRLIKEIEVLIRRFWWGQNGDKGKMH 1279
BLAST of Lcy08g008210 vs. ExPASy TrEMBL
Match:
A0A2N9GDB5 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25251 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 82/188 (43.62%), Postives = 120/188 (63.83%), Query Frame = 0
Query: 3 GLFAML-KAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKV 62
GL +++ K + TL G++I+R P +THLFFADDSL+F KAT + + I+ YEK
Sbjct: 1144 GLHSLIQKEKNAGTLKGVSISRGGPKITHLFFADDSLLFCKATTGDVDRIQSILSQYEKA 1203
Query: 63 FGQCINLNKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLL 122
GQ IN K+ ++FSK+ P+ + +M+ + I + YLGLPS R K F +
Sbjct: 1204 SGQQINRQKTTIFFSKSTPLQAQRSIQDMLEVPAIKQYERYLGLPSFVGRAKYSSFAQIK 1263
Query: 123 DKVWAILQGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGA 182
++VW+ L+GW+G L S+ G+EVL+KSV Q IP+YAM CFR+P ++ +I + + WWG
Sbjct: 1264 ERVWSKLKGWKGKLISQAGREVLIKSVAQAIPSYAMSCFRLPNRLIQEIEVIIRRFWWGQ 1323
Query: 183 NGDKRKMH 190
GDK KMH
Sbjct: 1324 GGDKGKMH 1331
BLAST of Lcy08g008210 vs. ExPASy TrEMBL
Match:
A0A2N9HLP3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40513 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 82/190 (43.16%), Postives = 120/190 (63.16%), Query Frame = 0
Query: 1 MGGLFAMLKAAR-SRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYE 60
M G ++L+ + + L G++I+R P +THLFFADDSL+F KATI + + I+ YE
Sbjct: 952 MKGFHSLLQKEKIAGALKGVSISRGGPKITHLFFADDSLLFCKATIADVERIQGILSQYE 1011
Query: 61 KVFGQCINLNKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQF 120
+ GQ IN K+ ++FSK+ P + NM+G+ I + YLGLPS R K F
Sbjct: 1012 RASGQQINRQKTTIFFSKSTPQSAQAAVQNMLGVPAIKQYERYLGLPSFIGRAKYSSFAQ 1071
Query: 121 LLDKVWAILQGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWW 180
+ ++VW+ L+GW+ L S+ G+E+L+KSV Q IP YAM CFR+P ++ +I L + WW
Sbjct: 1072 IKERVWSKLKGWKEKLISQAGREILIKSVAQAIPAYAMSCFRLPNRLIQEIEVLIRRFWW 1131
Query: 181 GANGDKRKMH 190
G +GDK KMH
Sbjct: 1132 GQSGDKGKMH 1141
BLAST of Lcy08g008210 vs. NCBI nr
Match:
XP_023905101.1 (uncharacterized protein LOC112016863 [Quercus suber] >XP_023916048.1 uncharacterized protein LOC112027624 [Quercus suber])
HSP 1 Score: 186.4 bits (472), Expect = 2.2e-43
Identity = 83/183 (45.36%), Postives = 121/183 (66.12%), Query Frame = 0
Query: 7 MLKAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCI 66
+++AA ++G ++ R P +THLFFADDSL+F +AT E ++ YE+V GQ I
Sbjct: 665 IMRAAAEGRINGFSLCRRGPKLTHLFFADDSLLFCRATPNECNAILDLLSSYERVSGQKI 724
Query: 67 NLNKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWA 126
N +K+ ++FSK+ P DT + ++G++ I + YLGLPS RGK F ++ +KVW
Sbjct: 725 NSSKTALFFSKSTPDDTKEIIRGLLGVQEIQHYEKYLGLPSLVGRGKKASFNYIKEKVWK 784
Query: 127 ILQGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKR 186
LQGWEG L S+ G+EVL+KSVIQ IP++AMGCF++P + I L K WWG G++R
Sbjct: 785 KLQGWEGKLLSQAGREVLIKSVIQAIPSFAMGCFKLPIGLCNDIEVLIRKFWWGERGNRR 844
Query: 187 KMH 190
K+H
Sbjct: 845 KVH 847
BLAST of Lcy08g008210 vs. NCBI nr
Match:
PNY15111.1 (ribonuclease H [Trifolium pratense])
HSP 1 Score: 184.5 bits (467), Expect = 8.5e-43
Identity = 81/181 (44.75%), Postives = 119/181 (65.75%), Query Frame = 0
Query: 9 KAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINL 68
K A + ++ GI IAR P ++HLFFADDSL+F +A+ E G ++ +Y+K GQ +NL
Sbjct: 632 KQAETGSMHGIQIARQAPKISHLFFADDSLLFARASAAEAGVILNVLAEYQKASGQVVNL 691
Query: 69 NKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAIL 128
+KS V FS+NV + + N MG++ +D+ YLGLP F R K F F++D+VW L
Sbjct: 692 DKSEVSFSQNVRNEDKDMIRNRMGVKTVDTHSKYLGLPVVFGRSKKIIFSFVIDRVWKKL 751
Query: 129 QGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKM 188
+GW+ S+ GKE+L+K+V Q IP Y MGC+++P S +I T+ AK WWG+ G +RK+
Sbjct: 752 KGWKEKCLSRAGKEILIKAVAQAIPNYIMGCYKLPNSCCQEIETMLAKFWWGSKGGERKI 811
Query: 189 H 190
H
Sbjct: 812 H 812
BLAST of Lcy08g008210 vs. NCBI nr
Match:
XP_030924923.1 (uncharacterized protein LOC115951949 [Quercus lobata])
HSP 1 Score: 179.9 bits (455), Expect = 2.1e-41
Identity = 79/181 (43.65%), Postives = 121/181 (66.85%), Query Frame = 0
Query: 9 KAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINL 68
KA L G++I R PSV+HL FADDSL+F +AT +E T +++ Y + GQCIN+
Sbjct: 718 KAEEEGKLHGVSICRRAPSVSHLLFADDSLLFCQATHDEVRTILELLQLYVESSGQCINM 777
Query: 69 NKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAIL 128
+KS+VYFS NV + + ++G++ ++ F YLGLP+ + K + F FL D+VW +
Sbjct: 778 DKSLVYFSSNVEEERRQRIKELLGVKEVERFESYLGLPTLVGQAKYQTFSFLKDRVWKKI 837
Query: 129 QGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKM 188
QGW+G L S+ GKE+L+K+V Q IPTY MG F++P + +++ +CA+ WWG ++RK+
Sbjct: 838 QGWKGKLLSRAGKEILIKAVAQSIPTYTMGVFQLPMKLCEELNAMCARFWWGQIDNERKI 897
Query: 189 H 190
H
Sbjct: 898 H 898
BLAST of Lcy08g008210 vs. NCBI nr
Match:
XP_010495217.1 (PREDICTED: uncharacterized protein LOC104772285 [Camelina sativa])
HSP 1 Score: 177.9 bits (450), Expect = 8.0e-41
Identity = 81/181 (44.75%), Postives = 109/181 (60.22%), Query Frame = 0
Query: 9 KAARSRTLSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINL 68
KA R + ++GI +A CP +THL FADDSL F K T EE ++ YE V GQ INL
Sbjct: 455 KAEREKLITGIKVANQCPPITHLLFADDSLFFCKVTKEECEAILTVLRSYEAVSGQLINL 514
Query: 69 NKSMVYFSKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAIL 128
KS + F VP DT L +++G+ + G YLG+P + KTK F F+ DK+
Sbjct: 515 EKSSIQFGHKVPEDTKAELQSILGISKLGGMGSYLGIPESLGGSKTKVFSFVRDKLQGRT 574
Query: 129 QGWEGSLFSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKM 188
GW L S+GGKEV++KSV +PT+ M CFRIPK+I +K+++ A WW +NG M
Sbjct: 575 TGWSAKLLSRGGKEVMIKSVATAVPTFVMSCFRIPKTITSKLTSAIANFWWSSNGQSGGM 634
Query: 189 H 190
H
Sbjct: 635 H 635
BLAST of Lcy08g008210 vs. NCBI nr
Match:
XP_023915663.1 (uncharacterized protein LOC112027222 [Quercus suber])
HSP 1 Score: 177.2 bits (448), Expect = 1.4e-40
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 16 LSGIAIARSCPSVTHLFFADDSLVFLKATIEEFGTFRKIMLDYEKVFGQCINLNKSMVYF 75
L G++I R P ++HL FADDSL+F +AT+EE + Y GQCIN KS VYF
Sbjct: 186 LHGVSIGRRAPMISHLLFADDSLLFCRATMEEVRCISDTLQLYVVASGQCINFEKSSVYF 245
Query: 76 SKNVPVDTSVCLSNMMGMRMIDSFGPYLGLPSTFHRGKTKDFQFLLDKVWAILQGWEGSL 135
S N + N +G++ +D F YLGLP+ R K + F FL D+VW +QGW+G L
Sbjct: 246 SSNTQGVQREAIKNELGVKEVDRFESYLGLPTLVGRAKYRTFSFLKDRVWKKIQGWKGKL 305
Query: 136 FSKGGKEVLVKSVIQVIPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKMH 190
S+ GKEVL+K+V Q IPTY MG F++P + +++ +CAK WWG G+++K+H
Sbjct: 306 LSRAGKEVLIKAVAQSIPTYTMGVFQLPVKLCNELNAMCAKFWWGQIGNEKKIH 359
BLAST of Lcy08g008210 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04
Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 0
Query: 152 IPTYAMGCFRIPKSILTKISTLCAKIWWGANGDKRKMH 190
+PTY M CF +PK++ +I ++ A WW + + MH
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMH 40
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2K3PIK7 | 4.1e-43 | 44.75 | Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g011801 PE=4 SV=1 | [more] |
A0A803PWX1 | 2.0e-42 | 46.67 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A2N9G258 | 1.3e-41 | 46.55 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21302 PE=3 SV=1 | [more] |
A0A2N9GDB5 | 2.9e-41 | 43.62 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9HLP3 | 2.9e-41 | 43.16 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40513 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_023905101.1 | 2.2e-43 | 45.36 | uncharacterized protein LOC112016863 [Quercus suber] >XP_023916048.1 uncharacter... | [more] |
PNY15111.1 | 8.5e-43 | 44.75 | ribonuclease H [Trifolium pratense] | [more] |
XP_030924923.1 | 2.1e-41 | 43.65 | uncharacterized protein LOC115951949 [Quercus lobata] | [more] |
XP_010495217.1 | 8.0e-41 | 44.75 | PREDICTED: uncharacterized protein LOC104772285 [Camelina sativa] | [more] |
XP_023915663.1 | 1.4e-40 | 45.40 | uncharacterized protein LOC112027222 [Quercus suber] | [more] |
Match Name | E-value | Identity | Description | |
AT4G29090.1 | 8.3e-04 | 36.84 | Ribonuclease H-like superfamily protein | [more] |