Lcy08g008200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g008200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr08: 14162488 .. 14162955 (+)
RNA-Seq Expression	Lcy08g008200
Synteny	Lcy08g008200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCATAAGACGGCGGACAATTGTCTGGCAATTTTGAACCAGAGGGAGTCAGCCAGGTCGTGGAACCACACCAATATTGTGCTTATTCCAAATTCTCGCCATGCGAGGTTAATATATGATTATCGCCTTATCCGTCTTTGTAATGTCTCTTATAAAATTGTTACTAAGGTCATTGCGAATAGAATGAAGACTGTTTTGAATGATATCATAGATGAGTGTCAATCGGCGTTTATTCCAGGACGGTCTATAACAGATAACATGATTATTGGTCATGAAACTTTACATCTCCTTCAGCATAAAAGGAAAGGTAAAAAGGGTTTTGCTGCTCTTAAACTTGATATGAGTAAAGCATATGATAGAGTTGAATGGTCATATCTTAGCAAGGTGTTGGACAAACTGGGATTCCATGGGGAATGGATAATCTGGTTATGGATTGTATTTCATCAACATCTTTTTCTATTCTAG

mRNA sequence

ATGGGTCATAAGACGGCGGACAATTGTCTGGCAATTTTGAACCAGAGGGAGTCAGCCAGGTCGTGGAACCACACCAATATTGTGCTTATTCCAAATTCTCGCCATGCGAGGTTAATATATGATTATCGCCTTATCCGTCTTTGTAATGTCTCTTATAAAATTGTTACTAAGGTCATTGCGAATAGAATGAAGACTGTTTTGAATGATATCATAGATGAGTGTCAATCGGCGTTTATTCCAGGACGGTCTATAACAGATAACATGATTATTGGTCATGAAACTTTACATCTCCTTCAGCATAAAAGGAAAGGTAAAAAGGGTTTTGCTGCTCTTAAACTTGATATGAGTAAAGCATATGATAGAGTTGAATGGTCATATCTTAGCAAGGTGTTGGACAAACTGGGATTCCATGGGGAATGGATAATCTGGTTATGGATTGTATTTCATCAACATCTTTTTCTATTCTAG

Coding sequence (CDS)

ATGGGTCATAAGACGGCGGACAATTGTCTGGCAATTTTGAACCAGAGGGAGTCAGCCAGGTCGTGGAACCACACCAATATTGTGCTTATTCCAAATTCTCGCCATGCGAGGTTAATATATGATTATCGCCTTATCCGTCTTTGTAATGTCTCTTATAAAATTGTTACTAAGGTCATTGCGAATAGAATGAAGACTGTTTTGAATGATATCATAGATGAGTGTCAATCGGCGTTTATTCCAGGACGGTCTATAACAGATAACATGATTATTGGTCATGAAACTTTACATCTCCTTCAGCATAAAAGGAAAGGTAAAAAGGGTTTTGCTGCTCTTAAACTTGATATGAGTAAAGCATATGATAGAGTTGAATGGTCATATCTTAGCAAGGTGTTGGACAAACTGGGATTCCATGGGGAATGGATAATCTGGTTATGGATTGTATTTCATCAACATCTTTTTCTATTCTAG

Protein sequence

MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYDRVEWSYLSKVLDKLGFHGEWIIWLWIVFHQHLFLF

Homology

[Close]

BLAST of Lcy08g008200 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 29  LIPNSRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLNDIIDECQSAFIPGRSITDNM 88
           L+P     RLI ++R + L +  YKIV K I+ R+K+VL ++I   QS  +PGR+I DN+
Sbjct: 512 LLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNV 571

Query: 89  IIGHETLHLLQHKRKGKKGFAALKLDMSKAYDRVEWSYLSKVLDKLGFHGEWIIWL 145
            +  + LH     R+     A L LD  KA+DRV+  YL   L    F  +++ +L
Sbjct: 572 FLIRDLLHF---ARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYL 624

[Close]

BLAST of Lcy08g008200 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-09
Identity = 37/123 (30.08%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 21  SWNHTNIVLIPN-SRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLNDIIDECQSAFI 80
           S+   +I+LIP   R      ++R I L N+  KI+ K++ANR++  +  +I   Q  FI
Sbjct: 508 SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFI 567

Query: 81  PGRSITDNMIIGHETLHLLQHKRKGK-KGFAALKLDMSKAYDRVEWSYLSKVLDKLGFHG 140
           PG     N+    ++++++QH  + K K    + +D  KA+D+++  ++ K L+KLG  G
Sbjct: 568 PGMQGWFNI---RKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDG 627

Query: 141 EWI 142
            ++
Sbjct: 628 MYL 627

[Close]

BLAST of Lcy08g008200 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.6e-08
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 26  NIVLIPN-SRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLNDIIDECQSAFIPGRSI 85
           NI LIP   +      +YR I L N+  KI+ K++ NR++  +  II   Q  FIPG   
Sbjct: 512 NITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQG 571

Query: 86  TDNMIIGHETLHLLQHKRKGK-KGFAALKLDMSKAYDRVEWSYLSKVLDKLGFHGEWI 142
             N+    ++++++QH  K K K    L +D  KA+D ++  ++ + L K+G  G ++
Sbjct: 572 WFNI---RKSINVIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFL 626

[Close]

BLAST of Lcy08g008200 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 36/122 (29.51%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 21  SWNHTNIVLIPN-SRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLNDIIDECQSAFI 80
           S+    I LIP   +    I ++R I L N+  KI+ K++ANR++  +  II   Q  FI
Sbjct: 515 SFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFI 574

Query: 81  PGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYDRVEWSYLSKVLDKLGFHGE 140
           PG     N+      +H +   +   K    + LD  KA+D+++  ++ KVL++ G  G 
Sbjct: 575 PGMQGWFNIRKSINVIHYINKLK--DKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGP 634

Query: 141 WI 142
           ++
Sbjct: 635 YL 634

[Close]

BLAST of Lcy08g008200 vs. ExPASy TrEMBL
Match: A0A2N9IE82 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50265 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.8e-36
Identity = 74/141 (52.48%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G +     L  LN  +  R+ NHT I LIP  ++  ++ D+R I LCNV YKI++KV+A
Sbjct: 281 IGEEVTKAVLTCLNTGKILRAINHTYITLIPKVQNPEVVMDFRPISLCNVIYKIISKVLA 340

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+KT+L  I+ E QSAF+PGR ITDN+++  ETLH +QH+ KG  G  ALKLDMSKAYD
Sbjct: 341 NRLKTLLPRIVSESQSAFVPGRLITDNILVAFETLHHMQHQTKGNVGSMALKLDMSKAYD 400

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEW YL +V++++GFH +W+
Sbjct: 401 RVEWKYLQRVMERMGFHSKWV 421

[Close]

BLAST of Lcy08g008200 vs. ExPASy TrEMBL
Match: A0A2N9HE46 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37832 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 72/132 (54.55%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 10  LAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLND 69
           L  LN  +  R+ NHT + LIP  ++  ++ ++R I LCNV YKI++KV+ANR+KT+L  
Sbjct: 843 LGSLNSGKILRAINHTYVTLIPKVKNPEVVTEFRPISLCNVIYKIISKVLANRLKTILPQ 902

Query: 70  IIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYDRVEWSYLSK 129
           I+ E QSAF+PGR ITDN+++  ETLH +QH++ GK G  ALKLDMSKAYDRVEW YL  
Sbjct: 903 IVSESQSAFVPGRLITDNILVAFETLHYMQHQKTGKTGSMALKLDMSKAYDRVEWPYLKS 962

Query: 130 VLDKLGFHGEWI 142
           V++++GFH +WI
Sbjct: 963 VMERMGFHAKWI 974

[Close]

BLAST of Lcy08g008200 vs. ExPASy TrEMBL
Match: A0A2N9FBQ4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12524 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.4e-35
Identity = 71/132 (53.79%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 10  LAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLND 69
           L  LN  +  ++ NHT + LIP  ++  ++ ++R I LCNV YKI++KV+ANR+KT+L  
Sbjct: 597 LGSLNSGKILKAINHTYVTLIPKVKNPEVVTEFRPISLCNVIYKIISKVLANRLKTILPQ 656

Query: 70  IIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYDRVEWSYLSK 129
           I+ E QSAF+PGR ITDN+++  ETLH +QH++ GK G  ALKLDMSKAYDRVEW YL  
Sbjct: 657 IVSESQSAFVPGRLITDNILVAFETLHYMQHQKTGKTGSMALKLDMSKAYDRVEWPYLKS 716

Query: 130 VLDKLGFHGEWI 142
           V++++GFH +WI
Sbjct: 717 VMERMGFHAKWI 728

[Close]

BLAST of Lcy08g008200 vs. ExPASy TrEMBL
Match: A0A2N9GM07 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28341 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.4e-35
Identity = 73/141 (51.77%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G +  +  L +LN   SA ++N TNI LIP ++  + + ++R I LCNV+YK+++KVIA
Sbjct: 224 VGKEVTEEVLQVLNTNASAAAYNKTNIALIPKTKTPQRMTEFRPISLCNVTYKLISKVIA 283

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+K+VL+D+I E QSAF+PGR+ITDN ++  E +H  Q KR GK  + ALKLDMSKAYD
Sbjct: 284 NRLKSVLSDLISETQSAFVPGRNITDNALVAFEIMHYFQQKRSGKDTYMALKLDMSKAYD 343

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEW ++ +V+ KLGF  +WI
Sbjct: 344 RVEWVFIEQVMKKLGFCEKWI 364

[Close]

BLAST of Lcy08g008200 vs. ExPASy TrEMBL
Match: A0A2N9GY38 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35098 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 71/141 (50.35%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G +  +  L  LN  +  ++ NHT I LIP  ++   + D+R I LCNV YKI++KV+A
Sbjct: 521 IGDEVTEAVLTCLNTGKILKAINHTYITLIPKIQNPEAVVDFRPISLCNVIYKIISKVLA 580

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+K +L  I+ E QSAF+PGR ITDN+++  ETLH +QH++KG+ G  ALKLDMSKAYD
Sbjct: 581 NRLKIILPKIVSESQSAFVPGRLITDNILVAFETLHHMQHQKKGRIGSMALKLDMSKAYD 640

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEW YL +V++++GF  +W+
Sbjct: 641 RVEWKYLQRVMERMGFSSKWV 661

[Close]

BLAST of Lcy08g008200 vs. NCBI nr
Match: XP_042972927.1 (uncharacterized protein LOC122304723 [Carya illinoinensis])

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-34
Identity = 77/141 (54.61%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G++T++  L ILNQ +S +  N T I LIP  +  + ++++R I L NVSYKIV KV+A
Sbjct: 221 IGNETSNFVLKILNQGDSLKGVNDTFITLIPKVKDPKTVFEFRPISLYNVSYKIVAKVLA 280

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+K +L DII   QSAF+PGR ITDN++  +ET H +  K KGK GF ALKLDMSKAYD
Sbjct: 281 NRLKLILPDIISLNQSAFVPGRLITDNVVAAYETFHTMNSKIKGKAGFMALKLDMSKAYD 340

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEWS+L  V++K+GF  +WI
Sbjct: 341 RVEWSFLWAVMEKMGFASQWI 361

[Close]

BLAST of Lcy08g008200 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 73/141 (51.77%), Postives = 98/141 (69.50%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G KT + CL  LN  +  + WN T I LIP  +  R I D+R I LCNVSYKI++K I 
Sbjct: 625 VGPKTLEACLNALNNGDDIKKWNSTYIALIPKIKQPRSISDFRPISLCNVSYKIISKSIT 684

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+K V+  +I + QSAF+P R+I+DN+IIGHE LH +   + G  G AALKLD+SKA+D
Sbjct: 685 NRLKNVIGLVISDAQSAFVPSRAISDNVIIGHECLHTINSCKSGLIGMAALKLDLSKAFD 744

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEW+YL  ++ K+GF+  WI
Sbjct: 745 RVEWTYLECIMRKMGFNEGWI 765

[Close]

BLAST of Lcy08g008200 vs. NCBI nr
Match: XP_015619246.1 (uncharacterized protein LOC107279669 [Oryza sativa Japonica Group])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 73/141 (51.77%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G K  D  L +L        WN   IVLIP  +   LI D R I LCNV YK+V+KV+A
Sbjct: 719 VGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLA 778

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+K +L D+I   QSAF+PGR I+DN++I  E  H +++KR G+ G+AA KLDMSKAYD
Sbjct: 779 NRLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYD 838

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEWS+L  ++ KLGFH +W+
Sbjct: 839 RVEWSFLHDMILKLGFHTDWV 859

[Close]

BLAST of Lcy08g008200 vs. NCBI nr
Match: ABA98491.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 73/141 (51.77%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 1   MGHKTADNCLAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIA 60
           +G K  D  L +L        WN   IVLIP  +   LI D R I LCNV YK+V+KV+A
Sbjct: 719 VGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLA 778

Query: 61  NRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYD 120
           NR+K +L D+I   QSAF+PGR I+DN++I  E  H +++KR G+ G+AA KLDMSKAYD
Sbjct: 779 NRLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYD 838

Query: 121 RVEWSYLSKVLDKLGFHGEWI 142
           RVEWS+L  ++ KLGFH +W+
Sbjct: 839 RVEWSFLHDMILKLGFHTDWV 859

[Close]

BLAST of Lcy08g008200 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 70/132 (53.03%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 10  LAILNQRESARSWNHTNIVLIPNSRHARLIYDYRLIRLCNVSYKIVTKVIANRMKTVLND 69
           L +LN   S    N TNI L+P  ++   + D+R I LCNV YK+++KV+ANR+K +L  
Sbjct: 312 LDVLNSNMSMVEINKTNITLVPKIKNPTKMSDFRPISLCNVVYKLISKVLANRLKNILPQ 371

Query: 70  IIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKAYDRVEWSYLSK 129
           II E QSAF+ GR ITDN+++  E +H L+HK++GK+GFAA+KLDMSKAYDRVEW ++ +
Sbjct: 372 IISENQSAFLSGRLITDNVLVAFELMHYLEHKKEGKEGFAAIKLDMSKAYDRVEWGFIKQ 431

Query: 130 VLDKLGFHGEWI 142
           V++K+GFH +WI
Sbjct: 432 VMEKMGFHEKWI 443

[Close]

BLAST of Lcy08g008200 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 59  IANRMKTVLNDIIDECQSAFIPGRSITDNMIIGHETLHLLQHKRKGKKGFAALKLDMSKA 118
           +  R+K ++ ++I   Q++FIPGR  TDN++   E +H ++ K KG KG+  LKLD+ KA
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRK-KGVKGWMLLKLDLEKA 60

Query: 119 YDRVEWSYLSKVLDKLGFHGEWI 142
           YDR+ W YL   L   GF   W+
Sbjct: 61  YDRIRWDYLEDTLISAGFPEVWL 82

The following BLAST results are available for this feature:

BLAST of Lcy08g008200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	5.1e-12	37.07	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
O00370	3.1e-09	30.08	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P08548	7.6e-08	31.36	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
P11369	1.3e-07	29.51	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]

BLAST of Lcy08g008200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IE82	6.8e-36	52.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50265 PE=4 SV=1	[more]
A0A2N9HE46	1.5e-35	54.55	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37832 PE=4 SV=1	[more]
A0A2N9FBQ4	3.4e-35	53.79	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GM07	3.4e-35	51.77	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GY38	1.3e-34	50.35	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]

BLAST of Lcy08g008200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042972927.1	2.7e-34	54.61	uncharacterized protein LOC122304723 [Carya illinoinensis]	[more]
XP_022158377.1	1.3e-33	51.77	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_015619246.1	1.3e-33	51.77	uncharacterized protein LOC107279669 [Oryza sativa Japonica Group]	[more]
ABA98491.1	1.3e-33	51.77	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
XP_023881891.1	1.3e-33	53.03	uncharacterized protein LOC111994244 [Quercus suber]	[more]

BLAST of Lcy08g008200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20520.1	1.5e-14	42.17	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 41..148 e-value: 6.4E-19 score: 68.3
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 2..141
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 2..141
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 42..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g008200.1	Lcy08g008200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding