Lcy08g008100 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g008100
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr08: 13687812 .. 13688024 (+)
RNA-Seq ExpressionLcy08g008100
SyntenyLcy08g008100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAGAGAAGCAAAAGTGGTCGACGGTGTTGCTTCTGCAGTCGCTGCAGAGAGCACCGGTTCCTCCTTCTAACCCCAATCCCGGCACCAATATTCCAGTGCCGGCCGTCCGGCAGAGGGCTTTTGCCGGAAAATCCATGGCGCCGCCGCCACACGCTTACCCTGAGCATGTAATGGTTCCTTCTGGTGTGGCCTTGAAGACCAATTAA

mRNA sequence

ATGAAAGAAGAGAAGCAAAAGTGGTCGACGGTGTTGCTTCTGCAGTCGCTGCAGAGAGCACCGGTTCCTCCTTCTAACCCCAATCCCGGCACCAATATTCCAGTGCCGGCCGTCCGGCAGAGGGCTTTTGCCGGAAAATCCATGGCGCCGCCGCCACACGCTTACCCTGAGCATGTAATGGTTCCTTCTGGTGTGGCCTTGAAGACCAATTAA

Coding sequence (CDS)

ATGAAAGAAGAGAAGCAAAAGTGGTCGACGGTGTTGCTTCTGCAGTCGCTGCAGAGAGCACCGGTTCCTCCTTCTAACCCCAATCCCGGCACCAATATTCCAGTGCCGGCCGTCCGGCAGAGGGCTTTTGCCGGAAAATCCATGGCGCCGCCGCCACACGCTTACCCTGAGCATGTAATGGTTCCTTCTGGTGTGGCCTTGAAGACCAATTAA

Protein sequence

MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVMVPSGVALKTN
Homology
BLAST of Lcy08g008100 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-12
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 1  MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVM 60
          MK++++KWS +L+ QSLQRAPVPPS  +  TNIPVP + Q+AFAGKS  PP    P+++ 
Sbjct: 27 MKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIPVP-LGQQAFAGKSTVPPAFPDPDNLE 86

Query: 61 VPSGVALKTN 71
          VPSGVALKTN
Sbjct: 87 VPSGVALKTN 94

BLAST of Lcy08g008100 vs. ExPASy TrEMBL
Match: A0A7J7CYF4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 11 VLLLQSLQRAPVPPSNPNPGTNIP----VPAVRQRAFAGKSMAPPPHAYPEHVMVPSGVA 67
          VL+LQSLQR PV PS PN  T IP     P   QR FAG+++A  P+AYP+++MVP GVA
Sbjct: 39 VLMLQSLQRGPVRPSGPNGCTYIPGRGGAPCTSQRGFAGRAVA-APNAYPDNLMVPFGVA 97

BLAST of Lcy08g008100 vs. ExPASy TrEMBL
Match: A0A067LI70 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05747 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-05
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 12 LLLQSLQRAPVPPSNPNPGTNIP----VPAVRQRAFAGKSMAPPPHAYPEHVMVPSGVA 67
          L+LQSLQ+ PV PS PN    +P     P   QR FAG  +APP HAYP  V+VP GVA
Sbjct: 35 LILQSLQKGPVTPSGPNGCNYVPGRGGAPCTSQRTFAGHGVAPPNHAYP-GVVVPFGVA 92

BLAST of Lcy08g008100 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MKEEKQKWS--TVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMA 50
          +K+++Q WS    LL QSLQR PVPPS  N  TNIPVP V QRAFAGK+ A
Sbjct: 27 IKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTNIPVP-VGQRAFAGKTSA 76

BLAST of Lcy08g008100 vs. ExPASy TrEMBL
Match: A0A6A6LR19 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_036569 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 12  LLLQSLQRAPVPPSNPNPGTNIP----VPAVRQRAFAGKSMAPPPHAYPEHVMVPSGVA 67
           ++LQSL + PVPPS  N  TNIP     P   QR FAG ++APP HAYP  ++   GVA
Sbjct: 110 IVLQSLPKGPVPPSRSNGCTNIPNQGGAPCTNQRNFAGHAVAPPQHAYPGLLVPNFGVA 168

BLAST of Lcy08g008100 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 1  MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVM 60
          MK ++QKWS V L QSLQRAPVPPS  + GT IPVP + +RAFAGK MAPP  AYP+H++
Sbjct: 27 MKVDQQKWSMV-LQQSLQRAPVPPSGKDGGTTIPVP-LGERAFAGKFMAPPADAYPDHLL 86

Query: 61 VPSGVALKTN 71
          +PSGVAL TN
Sbjct: 87 IPSGVALNTN 94

BLAST of Lcy08g008100 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 1  MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVM 60
          MKE++QKWS +LL QSLQRAPVPPS  N GT IPVP + QR+F GKS   P H+Y   V 
Sbjct: 27 MKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIPVP-LGQRSFVGKSTPSPAHSYHHQVP 86

Query: 61 VPSGVALKTN 71
          VP GVA+ TN
Sbjct: 87 VPFGVAMNTN 95

BLAST of Lcy08g008100 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 1  MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVM 60
          MK+++QKWS +LL QSLQRAPVPPS  N GT IPVP + QRAF GKS   P H+Y   V 
Sbjct: 27 MKDDRQKWS-ILLQQSLQRAPVPPSAKNGGTTIPVP-LGQRAFVGKSTPSPAHSYHHQVP 86

Query: 61 VPSGVALKTN 71
          VP GVA+KTN
Sbjct: 87 VPFGVAMKTN 94

BLAST of Lcy08g008100 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 1  MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVM 60
          MK++++KWS +L+ QSLQRAPVPPS  +  TNIPVP + Q+AFAGKS  PP    P+++ 
Sbjct: 27 MKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIPVP-LGQQAFAGKSTVPPAFPDPDNLE 86

Query: 61 VPSGVALKTN 71
          VPSGVALKTN
Sbjct: 87 VPSGVALKTN 94

BLAST of Lcy08g008100 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 44/71 (61.97%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MKEEKQKWSTVLLLQSLQRAPVPPSNPNPGTNIPVPAVRQRAFAGKSMAPPPHAYPEHVM 60
          MKE+ QKWS +LL QSLQRAPVPP+  N GT IP P + QRAF GKS   P H+Y   V 
Sbjct: 27 MKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIPTP-LGQRAFVGKSTPSPAHSYHHQVP 86

Query: 61 VPSGV-ALKTN 71
          VP GV A+KTN
Sbjct: 87 VPLGVAAMKTN 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7776.9e-1261.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7CYF44.3e-0656.67Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 ... [more]
A0A067LI708.2e-0554.24Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05747 PE=4 SV=1[more]
A0A0A0LCY51.4e-0462.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A6A6LR191.8e-0450.85Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_036569 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6571506.11.1e-1467.14hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.14.4e-1362.86hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571505.11.3e-1264.29hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0025373.11.4e-1161.43hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957... [more]
KAG6571504.11.9e-1161.97hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g008100.1Lcy08g008100.1mRNA