Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAACTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATGCTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTAAATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATCTCTCAAGAAAGGCAACATGTGA
mRNA sequence
ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAACTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATGCTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTAAATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATCTCTCAAGAAAGGCAACATGTGA
Coding sequence (CDS)
ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAACTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATGCTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTAAATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATCTCTCAAGAAAGGCAACATGTGA
Protein sequence
MQTLPLAENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
Homology
BLAST of Lcy08g007770 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 4.8e-07
Identity = 37/137 (27.01%), Postives = 70/137 (51.09%), Query Frame = 0
Query: 15 DSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENA 74
++ SIL N N KL NYL W QV G++L + +P + + A
Sbjct: 11 NNTSILNVNMSN---VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAA 70
Query: 75 EKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLARTFSSRN 134
+ NP++ R+++QD+L+ S +LG++S + + +A +IW++L + +++ +
Sbjct: 71 PR------VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPS 130
Query: 135 TAKVMEYKTQLQSLKKG 152
V + +TQL+ KG
Sbjct: 131 YGHVTQLRTQLKQWTKG 138
BLAST of Lcy08g007770 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 27/117 (23.08%), Postives = 58/117 (49.57%), Query Frame = 0
Query: 26 NQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNP 85
N + KL NYL W QV G++L + +P + + + NP
Sbjct: 19 NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPR------VNP 78
Query: 86 EFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYK 143
++ R+++QD+L+ S +LG++S + + +A +IW++L + +++ + V + +
Sbjct: 79 DYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129
BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match:
A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I SGN++S +KLND +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L
Sbjct: 71 YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154
BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match:
A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I SGN++S +KLND +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L
Sbjct: 71 YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154
BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match:
A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.6e-27
Identity = 65/149 (43.62%), Postives = 104/149 (69.80%), Query Frame = 0
Query: 6 LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEI 65
++ NSS ++ + + SGN++S +KL+D N+L WKFQ+L A++ +DLEN + + E
Sbjct: 1 MSSNSSPLGVENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEP 60
Query: 66 PEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWD 125
P ++L + ++ + NPE+ +++ +RL+S WLLGSMSEEI+NQM+ CKSAKEIW
Sbjct: 61 PSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWG 120
Query: 126 SLARTFSSRNTAKVMEYKTQLQSLKKGNM 154
+L FSSR A+ M++K +L ++KKG+M
Sbjct: 121 TLQGIFSSRYLAQAMQFKNKLHNIKKGSM 149
BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match:
A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ + NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L
Sbjct: 71 YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154
BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match:
A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ + NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L
Sbjct: 71 YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154
BLAST of Lcy08g007770 vs. NCBI nr
Match:
KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I SGN++S +KLND +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L
Sbjct: 71 YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154
BLAST of Lcy08g007770 vs. NCBI nr
Match:
TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I SGN++S +KLND +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L
Sbjct: 71 YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154
BLAST of Lcy08g007770 vs. NCBI nr
Match:
KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 131.7 bits (330), Expect = 5.3e-27
Identity = 65/149 (43.62%), Postives = 104/149 (69.80%), Query Frame = 0
Query: 6 LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEI 65
++ NSS ++ + + SGN++S +KL+D N+L WKFQ+L A++ +DLEN + + E
Sbjct: 1 MSSNSSPLGVENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEP 60
Query: 66 PEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWD 125
P ++L + ++ + NPE+ +++ +RL+S WLLGSMSEEI+NQM+ CKSAKEIW
Sbjct: 61 PSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWG 120
Query: 126 SLARTFSSRNTAKVMEYKTQLQSLKKGNM 154
+L FSSR A+ M++K +L ++KKG+M
Sbjct: 121 TLQGIFSSRYLAQAMQFKNKLHNIKKGSM 149
BLAST of Lcy08g007770 vs. NCBI nr
Match:
KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 131.0 bits (328), Expect = 9.0e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ + NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L
Sbjct: 71 YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154
BLAST of Lcy08g007770 vs. NCBI nr
Match:
TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 131.0 bits (328), Expect = 9.0e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0
Query: 8 ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
EN+ +SS I S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11 ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70
Query: 68 FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
+L + ++ + NP + +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L
Sbjct: 71 YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130
Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
FSSR A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q94HW2 | 4.8e-07 | 27.01 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 1.3e-04 | 23.08 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7U233 | 1.4e-28 | 47.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3CH97 | 1.4e-28 | 47.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UB21 | 2.6e-27 | 43.62 | Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3D5T2 | 4.4e-27 | 45.89 | Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7VGJ8 | 4.4e-27 | 45.89 | Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |
KAA0048297.1 | 2.8e-28 | 47.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
TYK10642.1 | 2.8e-28 | 47.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0053143.1 | 5.3e-27 | 43.62 | keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa] | [more] |
KAA0067213.1 | 9.0e-27 | 45.89 | keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa] | [more] |
TYK18917.1 | 9.0e-27 | 45.89 | keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |