Lcy08g007770 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g007770
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr08: 10583117 .. 10583578 (+)
RNA-Seq ExpressionLcy08g007770
SyntenyLcy08g007770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAACTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATGCTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTAAATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATCTCTCAAGAAAGGCAACATGTGA

mRNA sequence

ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAACTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATGCTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTAAATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATCTCTCAAGAAAGGCAACATGTGA

Coding sequence (CDS)

ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAACTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATGCTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTAAATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATCTCTCAAGAAAGGCAACATGTGA

Protein sequence

MQTLPLAENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
Homology
BLAST of Lcy08g007770 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-07
Identity = 37/137 (27.01%), Postives = 70/137 (51.09%), Query Frame = 0

Query: 15  DSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENA 74
           ++ SIL  N  N     KL   NYL W  QV     G++L   +     +P   +  + A
Sbjct: 11  NNTSILNVNMSN---VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAA 70

Query: 75  EKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLARTFSSRN 134
            +       NP++ R+++QD+L+ S +LG++S  +   +    +A +IW++L + +++ +
Sbjct: 71  PR------VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPS 130

Query: 135 TAKVMEYKTQLQSLKKG 152
              V + +TQL+   KG
Sbjct: 131 YGHVTQLRTQLKQWTKG 138

BLAST of Lcy08g007770 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 27/117 (23.08%), Postives = 58/117 (49.57%), Query Frame = 0

Query: 26  NQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNP 85
           N  +  KL   NYL W  QV     G++L   +     +P   +  +   +       NP
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPR------VNP 78

Query: 86  EFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYK 143
           ++ R+++QD+L+ S +LG++S  +   +    +A +IW++L + +++ +   V + +
Sbjct: 79  DYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129

BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++     NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L 
Sbjct: 71  YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154

BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++     NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L 
Sbjct: 71  YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154

BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.6e-27
Identity = 65/149 (43.62%), Postives = 104/149 (69.80%), Query Frame = 0

Query: 6   LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEI 65
           ++ NSS    ++  + +  SGN++S +KL+D N+L WKFQ+L A++ +DLEN  + + E 
Sbjct: 1   MSSNSSPLGVENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEP 60

Query: 66  PEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWD 125
           P ++L    +  ++  +  NPE+  +++ +RL+S WLLGSMSEEI+NQM+ CKSAKEIW 
Sbjct: 61  PSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWG 120

Query: 126 SLARTFSSRNTAKVMEYKTQLQSLKKGNM 154
           +L   FSSR  A+ M++K +L ++KKG+M
Sbjct: 121 TLQGIFSSRYLAQAMQFKNKLHNIKKGSM 149

BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match: A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++  +  NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L 
Sbjct: 71  YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154

BLAST of Lcy08g007770 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++  +  NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L 
Sbjct: 71  YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154

BLAST of Lcy08g007770 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++     NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L 
Sbjct: 71  YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154

BLAST of Lcy08g007770 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++     NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW++L 
Sbjct: 71  YLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KKG+M
Sbjct: 131 GIFSSRYLAQAMQFKNKLHNIKKGSM 154

BLAST of Lcy08g007770 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 5.3e-27
Identity = 65/149 (43.62%), Postives = 104/149 (69.80%), Query Frame = 0

Query: 6   LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEI 65
           ++ NSS    ++  + +  SGN++S +KL+D N+L WKFQ+L A++ +DLEN  + + E 
Sbjct: 1   MSSNSSPLGVENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEP 60

Query: 66  PEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWD 125
           P ++L    +  ++  +  NPE+  +++ +RL+S WLLGSMSEEI+NQM+ CKSAKEIW 
Sbjct: 61  PSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWG 120

Query: 126 SLARTFSSRNTAKVMEYKTQLQSLKKGNM 154
           +L   FSSR  A+ M++K +L ++KKG+M
Sbjct: 121 TLQGIFSSRYLAQAMQFKNKLHNIKKGSM 149

BLAST of Lcy08g007770 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 9.0e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++  +  NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L 
Sbjct: 71  YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154

BLAST of Lcy08g007770 vs. NCBI nr
Match: TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 9.0e-27
Identity = 67/146 (45.89%), Postives = 102/146 (69.86%), Query Frame = 0

Query: 8   ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEE 67
           EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P +
Sbjct: 11  ENTEASSPINQIF--GSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSK 70

Query: 68  FLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDSLA 127
           +L    +  ++  +  NP +  +++QDRL+SSWLLGSMSEEI+NQM+ CKSAKEIW +L 
Sbjct: 71  YLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQ 130

Query: 128 RTFSSRNTAKVMEYKTQLQSLKKGNM 154
             FSSR  A+ M++K +L ++KK +M
Sbjct: 131 GIFSSRYLAQAMKFKNKLHNIKKESM 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94HW24.8e-0727.01Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.3e-0423.08Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5A7U2331.4e-2847.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CH971.4e-2847.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UB212.6e-2743.62Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3D5T24.4e-2745.89Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VGJ84.4e-2745.89Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
KAA0048297.12.8e-2847.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK10642.12.8e-2847.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0053143.15.3e-2743.62keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
KAA0067213.19.0e-2745.89keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
TYK18917.19.0e-2745.89keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 91..150
e-value: 2.7E-8
score: 33.7
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 27..152
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 27..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g007770.1Lcy08g007770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding