Lcy08g007490 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g007490
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Secretion protein HlyD family protein
Location	Chr08: 9754787 .. 9757330 (+)
RNA-Seq Expression	Lcy08g007490
Synteny	Lcy08g007490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTCCCGGAGTTACCTGTGTTTTCTGTATTTCAATATATCGATCCCCTCTTTCGGGCGTCTTCAGCTTCATTTATAGCTTTTTCCCGGTAGGGTTTGGTGATATTGTTGGACCCCATAAGGGATTTGGGCCCGTGGCCCTGGTCGACCTCATTCCCAGGTCGAGGCTGAGGAGAACAGAATGTGGCCTGATAAGGTCCTAACCCTTCTTCTGCTCGTACTGGGTTGCTACTCGTCTGTTTGGGCCCGTCAATTCTGGCCCATTTGGCTTGTTGTAATGCTGAATATTTTTTATCCATAACATTAAGCCCCCACTCTCTGGTGAAGACAACGACCTCGCCTTGATCTTCATCGGAGAGTTGACTTTTTATTTCGAGTTTTGCAGACTTTCGATATTCCCACCTTCCTGGTGTCCAGATACTCCAGTGCCGTGTGATTTTGTTGTTGTTTTTTATTTTGTCATAATTTATCAGCTTACCTGGAGGAAGATACTTTATTCTTCCTTAATCAACCTTAGTTTTCATCAGGGAATAGACTTCTTATTTACATTCCACCAATATCAAATGATTTATGAGAGTACAGGCAATCATTTTTTTATTGATTTAATTTGAAAGTGATGAGTATATAATTGGATTTAAACTGACTTCGTAACCGGTTAGGTAGGATTCAGTTGGCACAAGTGGACAAAAAGAAAAAGACAAATATGGGATGTTGACCGAGGCATTCAGCCTCGATCTGCCATGCATGCCAGGCACTAGGCCTGGCATGCCTCGGCCATTGGCCGAGGCCGAGCAGGCTAGGCCTGCTTTGGTATCCCATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGATTTTCAAATTTCAAATTTCAAATTTCCCTCCCAATTTCTCCTATAAATAGCCTTCATTCTCCTCCACTTCACTCACCACATTTTTCCTTTTCTTTCTTTCTCCACTCGCTCTCTGAGGAAGTTTTTTTATTAAGCGTGAGTTTTTCATTCATTTCAGTTTTTTAATCATGGCTAGTGAGAAGTCGGTTAGCTCTGAATTTTATTCTGATGATAATTCTGGTTTTTATGATGACTCTTCTTTCTCGGAGGATGAAGACGCTGGGCCTTCTGCTCATCCTACAGTTATGTCATCCTCCGTGACCGCAGCTCAACTTGAGCGTTTGCGGTACGAGTATGATATTCTTGAGGACGTGCATATGAGGGTTCCAGGCCTTAACGAGAGCTTTTCTCATCCTCTTGAGGGAAAAAATTGCTTTTTACATTGCTATGTTTAAATTTGGTGTTCGCCTTCCTCTTCCTTTACGTCTTCAACATTTTTGGTACTCATTGGCTTAGCACCTGCCCAATTTGTGCCCAACGGGTGGAGCCACTTGATTGGTTGCATCCTTTTATGGGCATGGTGCAACCGGGATGTACCCATGTCTCCAGATGTTTTCTTTTCTTTACATTCCATAAGTTGAAGTCCCAACTTAGGGCATCTATTATATTACATAAGCGCTAAAAAAGGGATTACCGTTAACAATCCTACCTCTGTGAAAAATTGGAGGAAGGGATGGTTTTTTGTCCGTGGAAACTGGTTAGAGCGTGGTCCCGATAATGGCCATTTTGTTGTGGCTACGAGCTTTGGGGAATATGGTGAGTGTTATTGTGTACTTGTGGTTTTCACTGATTCTTCTAACTCACTTTCGCATTTTGTTTTATGTGCAGCCCCCATAAGAGTTCGTCGCTCCGCTGAGGCCCGTGAATTTGCTGAAATTCTTCAGCAGATTTAACTCTGTCATCGCTACGACCCCGACTTAGTTAAACAAGAGAACCTCGTGTCCTTAGGCCTCGCCCGACCTCGTTCAAGTGAGTTTCTCCTTTTACACCTTGCTTGATTAGAGGCTAACTTTTTTGTACGATCTACTGAACTTTTTTTTTTACTGCAGCAATGCCTCCACGCTTGATATATGCAAAACGCCGCAAAGCAAGGAACACTCAAAGTGAAGCAGGGACCTCGCAGGCGAATGTGACGGTCCTTACCGAGGATGAGAAGTCCGACGCTCCATTCGTTGCTGCCCGATCCTCCACTGTCGGACTAAGGAGGTCTTCACGTAACCGGCGTCCCCCTGTCTCGACTCCCTCGGACGAGAGGGAAACTGCGATTCCAACTTTCGCCCTCCTGGAAGGCTACTCAGGCGGCGGGAATCAAGTAGAGATGCTCACCCAAGATTTCCTTTGCTGGCAAGGGTTGCAGTCGCACAAACCCGAGGGGGAGCTGGGTTATGATGACCCGACCGAGAGTTTCCAGATTGCCCATAGACAGATTCGTGAGGTTGGTCATCCATCCCTTTTAGGGGCATGAATTTTTAATCCCTCTCTTTTAAAAGAAAAGTCTCTAAACTATTTTATCTTTTGCAGGCTTTTACCAGGCTGACAGTTTCTGCCATTAGCTTGACGAACAAGATAAATGAGCTCCAGTCAAATAGCGTGCCTCGTCACGAGTTGGTTCAGTCTCAAAACAGCCTCGATTGCTAA

mRNA sequence

ATGGAGCTCCCGGAGTTACCTGTGTTTTCTGTATTTCAATATATCGATCCCCTCTTTCGGGCGTCTTCAGCTTCATTTATAGCTTTTTCCCGTGAAGCAGGGACCTCGCAGGCGAATGTGACGGTCCTTACCGAGGATGAGAAGTCCGACGCTCCATTCGTTGCTGCCCGATCCTCCACTGTCGGACTAAGGAGGTCTTCACGTAACCGGCGTCCCCCTGTCTCGACTCCCTCGGACGAGAGGGAAACTGCGATTCCAACTTTCGCCCTCCTGGAAGGCTACTCAGGCGGCGGGAATCAAGTAGAGATGCTCACCCAAGATTTCCTTTGCTGGCAAGGGTTGCAGTCGCACAAACCCGAGGGGGAGCTGGGTTATGATGACCCGACCGAGAGTTTCCAGATTGCCCATAGACAGATTCGTGAGGCTTTTACCAGGCTGACAGTTTCTGCCATTAGCTTGACGAACAAGATAAATGAGCTCCAGTCAAATAGCGTGCCTCGTCACGAGTTGGTTCAGTCTCAAAACAGCCTCGATTGCTAA

Coding sequence (CDS)

ATGGAGCTCCCGGAGTTACCTGTGTTTTCTGTATTTCAATATATCGATCCCCTCTTTCGGGCGTCTTCAGCTTCATTTATAGCTTTTTCCCGTGAAGCAGGGACCTCGCAGGCGAATGTGACGGTCCTTACCGAGGATGAGAAGTCCGACGCTCCATTCGTTGCTGCCCGATCCTCCACTGTCGGACTAAGGAGGTCTTCACGTAACCGGCGTCCCCCTGTCTCGACTCCCTCGGACGAGAGGGAAACTGCGATTCCAACTTTCGCCCTCCTGGAAGGCTACTCAGGCGGCGGGAATCAAGTAGAGATGCTCACCCAAGATTTCCTTTGCTGGCAAGGGTTGCAGTCGCACAAACCCGAGGGGGAGCTGGGTTATGATGACCCGACCGAGAGTTTCCAGATTGCCCATAGACAGATTCGTGAGGCTTTTACCAGGCTGACAGTTTCTGCCATTAGCTTGACGAACAAGATAAATGAGCTCCAGTCAAATAGCGTGCCTCGTCACGAGTTGGTTCAGTCTCAAAACAGCCTCGATTGCTAA

Protein sequence

MELPELPVFSVFQYIDPLFRASSASFIAFSREAGTSQANVTVLTEDEKSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETAIPTFALLEGYSGGGNQVEMLTQDFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVPRHELVQSQNSLDC

Homology

[Close]

BLAST of Lcy08g007490 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 52  PFVAARSSTVGLRRSSRNRRPPVSTPSDERETAIPTFALLEGYSGGGNQVEMLTQDFLCW 111
           P +A R +++  R   R  R    T S++     P F      S   +++E L + F  W
Sbjct: 120 PGIATRRTSLFEREQRRVERAACRTSSNQLPNINP-FVYQGSCSSEVDEIEYLKRTFDIW 179

Query: 112 QGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVPRHELV 171
           +GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VPR EL+
Sbjct: 180 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 239

Query: 172 QSQNSLD 179
           ++   L+
Sbjct: 240 RANRRLE 245

[Close]

BLAST of Lcy08g007490 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 52  PFVAARSSTVGLRRSSRNRRPPVSTPSDERETAIPTFALLEGYSGGGNQVEMLTQDFLCW 111
           P +A R +++  R   R  R    T S++     P F      S   +++E L + F  W
Sbjct: 69  PGIATRRTSLFEREQRRVERAACRTSSNQLPNINP-FVYQGSCSSEVDEIEYLKRTFDIW 128

Query: 112 QGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVPRHELV 171
           +GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VPR EL+
Sbjct: 129 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 188

Query: 172 QSQNSLD 179
           ++   L+
Sbjct: 189 RANRRLE 194

[Close]

BLAST of Lcy08g007490 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 52  PFVAARSSTVGLRRSSRNRRPPVSTPSDERETAIPTFALLEGYSGGGNQVEMLTQDFLCW 111
           P +A R +++  R   R  R    T S++     P F      S   +++E L + F  W
Sbjct: 130 PGIATRRTSLFEREQRRVERAACRTSSNQLPNINP-FVYQGSCSSEVDEIEYLKRTFDIW 189

Query: 112 QGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVPRHELV 171
           +GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VPR EL+
Sbjct: 190 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 249

Query: 172 QSQNSLD 179
           ++   L+
Sbjct: 250 RANRRLE 255

[Close]

BLAST of Lcy08g007490 vs. ExPASy TrEMBL
Match: A0A1S3C5V5 (uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 52  PFVAARSSTVGLRRSSRNRRPPVSTPSDERETAIPTFALLEGYSGGGNQVEMLTQDFLCW 111
           P +A R +++  R   R  R    T S++     P F      S   +++E L + F  W
Sbjct: 97  PGIATRRTSLFEREQRRVERAACRTSSNQLPNINP-FVYQGSCSSEVDEIEYLKRTFDIW 156

Query: 112 QGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVPRHELV 171
           +GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VPR EL+
Sbjct: 157 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 216

Query: 172 QSQNSLD 179
           ++   L+
Sbjct: 217 RANRRLE 222

[Close]

BLAST of Lcy08g007490 vs. ExPASy TrEMBL
Match: A0A1S4E2A9 (uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-06
Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 32  EAGTSQANVTVLTEDEKSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETAIPTFALL 91
           E+ T+   + +     KS    +A R +++  R   R  R    T S++     P F   
Sbjct: 67  ESSTNVVGLQLQQPSTKSQG--IATRRTSLFEREQRRVERAACRTSSNQLPNINP-FVYQ 126

Query: 92  EGYSGGGNQVEMLTQDFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAI 151
              S   +++E L + F  W+GL     EGE G+ DP++ F +     R AFTR ++S  
Sbjct: 127 GSCSSEVDEIEYLKRTFDIWRGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFG 186

Query: 152 SLTNKINELQSNSVPRHELVQSQNSLD 179
            + +++N L  N VPR EL+++   L+
Sbjct: 187 RMGDELNHLYLNYVPREELMRANRRLE 210

[Close]

BLAST of Lcy08g007490 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 48  KSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETA-IPTFALLEGYSGGGNQVEMLTQ 107
           K D   +A R +++  R   R  R    T S   +   I  F     YS   ++VE L +
Sbjct: 102 KQDDLDIATRRTSLFEREQRRVARAARRTSSSSNQLPNINPFVYQGSYSSEVDEVEYLKR 161

Query: 108 DFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVP 167
            F  W+GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VP
Sbjct: 162 TFDIWRGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVP 221

Query: 168 RHELVQSQNSLD 179
           R EL+++   L+
Sbjct: 222 REELMRANRRLE 233

[Close]

BLAST of Lcy08g007490 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 48  KSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETA-IPTFALLEGYSGGGNQVEMLTQ 107
           K D   +A R +++  R   R  R    T S   +   I  F     YS   ++VE L +
Sbjct: 133 KQDDLDIATRRTSLFEREQRRVARAARRTSSSSNQLPNINPFVYQGSYSSEVDEVEYLKR 192

Query: 108 DFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVP 167
            F  W+GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VP
Sbjct: 193 TFDIWRGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVP 252

Query: 168 RHELVQSQNSLD 179
           R EL+++   L+
Sbjct: 253 REELMRANRRLE 264

[Close]

BLAST of Lcy08g007490 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 48  KSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETA-IPTFALLEGYSGGGNQVEMLTQ 107
           K D   +A R +++  R   R  R    T S   +   I  F     YS   ++VE L +
Sbjct: 119 KQDDLDIATRRTSLFEREQRRVARAARRTSSSSNQLPNINPFVYQGSYSSEVDEVEYLKR 178

Query: 108 DFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVP 167
            F  W+GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VP
Sbjct: 179 TFDIWRGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVP 238

Query: 168 RHELVQSQNSLD 179
           R EL+++   L+
Sbjct: 239 REELMRANRRLE 250

[Close]

BLAST of Lcy08g007490 vs. NCBI nr
Match: KGN66039.2 (hypothetical protein Csa_020117 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 48  KSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETA-IPTFALLEGYSGGGNQVEMLTQ 107
           K D   +A R +++  R   R  R    T S   +   I  F     YS   ++VE L +
Sbjct: 118 KQDDLDIATRRTSLFEREQRRVARAARRTSSSSNQLPNINPFVYQGSYSSEVDEVEYLKR 177

Query: 108 DFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVP 167
            F  W+GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VP
Sbjct: 178 TFDIWRGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVP 237

Query: 168 RHELVQSQNSLD 179
           R EL+++   L+
Sbjct: 238 REELMRANRRLE 249

[Close]

BLAST of Lcy08g007490 vs. NCBI nr
Match: XP_031737080.1 (uncharacterized protein LOC105435920 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 48  KSDAPFVAARSSTVGLRRSSRNRRPPVSTPSDERETA-IPTFALLEGYSGGGNQVEMLTQ 107
           K D   +A R +++  R   R  R    T S   +   I  F     YS   ++VE L +
Sbjct: 132 KQDDLDIATRRTSLFEREQRRVARAARRTSSSSNQLPNINPFVYQGSYSSEVDEVEYLKR 191

Query: 108 DFLCWQGLQSHKPEGELGYDDPTESFQIAHRQIREAFTRLTVSAISLTNKINELQSNSVP 167
            F  W+GL     EGE G+ DP++ F +     R AFTR ++S   + +++N L  N VP
Sbjct: 192 TFDIWRGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVP 251

Query: 168 RHELVQSQNSLD 179
           R EL+++   L+
Sbjct: 252 REELMRANRRLE 263

The following BLAST results are available for this feature:

BLAST of Lcy08g007490 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g007490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSF9	5.9e-07	30.71	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BQ22	5.9e-07	30.71	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C5B2	5.9e-07	30.71	uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C5V5	5.9e-07	30.71	uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E2A9	2.9e-06	28.57	uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lcy08g007490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737089.1	5.4e-07	31.82	uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus]	[more]
XP_031737075.1	5.4e-07	31.82	uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus]	[more]
XP_031737083.1	5.4e-07	31.82	uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus]	[more]
KGN66039.2	5.4e-07	31.82	hypothetical protein Csa_020117 [Cucumis sativus]	[more]
XP_031737080.1	5.4e-07	31.82	uncharacterized protein LOC105435920 isoform X2 [Cucumis sativus]	[more]

BLAST of Lcy08g007490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g007490.1	Lcy08g007490.1	mRNA