Lcy08g006950 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g006950
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionActin-related protein 2/3 complex subunit
LocationChr08: 8745824 .. 8752977 (+)
RNA-Seq ExpressionLcy08g006950
SyntenyLcy08g006950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGTGAGCTATGCTTTTAATAAATTGTCTTATCTTTAAGATATTGTAATATTTTGAGGAATATTTAAAGTGATTTATCTGCTTCCCTTCCCGCCCACCAAAACTAGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCTTCAGGTTCAACATATGGATCCCAGGTATTGAATCGCTTAAAGTTTCTCAGTTAACAATTATTTTACGACTTAAGCTGTAAACAGAATGCATTGTCTACTGGCTCAATGCTTAGTTATTTTATGTATCTTCTTAGTTAGGTTTACAGATGACCTGATCTAATTGGGTCATTGCTTGTTTAGTTGTTCCACCCCTGGCTGAATCCTCGGCCTACTGGGCATGGCGGGGCTGCAAGTATATGGAGTGGACTTAAAATCAATATGAAGGCTAGTATGGACTGTTGGATGTTGGTTTTCCTGGCATTTTACATAATATACATAAATTTGTAAATTTGAATATATAATTACATAAAGAGTATCAAATGGAAATAGTGATTTAGAAGAAATGTCTAAAAAATGAAAAAACAAAAATAATAAGTATTCGAAAAGAAAAAAAAAATTAATATAAATCAATATGAAGGCTGGTAGTATCCTTTGGGAGTGGGGGAGTGGTTAGTTTTCCATGTGCTGTAGGATTAAACTCTATTTCTCATACTTTCACTCATTGATTCATTCATTGTTCAGATTAGGTTAGGTAGGTATATGTTGATCTCACACCAAAGCAAAGAAATTAAAAAACAATAAATTTTGAAATATGGAGAAGAGAGGAATAGACATCAAAAAGTAATTGAAAATAGTCTCTTTTCAAGTCAAATTGTTTTAACAATGATTTGGTCAAAGATTTATTTATTTATTTATTTATTTTTTTTTTTTTAATTTTAATTTTAAGAAACAATTTCATTGATGTATGAAATTTATAAAAGGAATAGAAAATTCATGATAATTACAAAAAGTTTTCCTAATCGGTTAAAAGGGTAGTGTGATTATATGAAGTAAAGAGAGAGAAAATCTATATTAATTATAGGTTATTGTAATGGGTAGCAATTTAAATTTTTTTATTTGTAAATATGGCAAATCTATCAGTGATAGACATTTATCACTGATAGACTTCAATCACAATGCATGTAGTATGTTAGCGATAGACTACCATTACCGATAGAATAGTCTTTCACAATTGCAATTGTGATTACTGATAGATTTTAATTTTGTTATATTTTCAAATAGTCTTGGCAAGTCTATCAATGATAGACATCTATCACTGAACGTTAATCACAATACATGTAGTCTGACTACTATCACTGATAGAATACACTTTAAGGAATAATTGCAATTGTGATTAAAGTCTATCATTGATAGACTTTAATTTTGTTATATTTGCAAATAATTTTGGCAAATCTATCAATGATAGATATCTATCACTAATAGACTTCAATCACAGTACATGTAGTCTATCAATGATAGACTACTATCACTAATAGAATTTCTATCAACAATAATTACACTAGTGATAGACATCTATCACTTAAAAAAAAACATCTATCACTGATAGATTTCAATCATAATGCATGTAGTCTATCAGCAATAACTACACTTGTGGTTGAAGTCTATCACTAACAAACTTAAATTTTGCTATATTTACAAATAGTTTTGGATTTTGCTATATTTGCAATTATTTTAGTCTATTTTGTTATTTGTGCAAACAACCCTTAAATTTATGAGTACATGTATTAATGAAATGAATTTTGGTAGGCTGGGGTGGGGCCATCAATTTAATTAGGATTGATCTTGTAAGGTATCCCCTTACAAGAAGTTGATATTCAGATTGTAAAAACAGCCCAAAGGCTTTACAAAACCCAGCAAATTCAAGAGTGCTGGTAGCTCTCCCTCTCCTATAGAGATTCACTCACAAAACAAAGCCTAAAAACAACCCTAAAAACATAAAGGAACTTATATACTACCCTCCTCCCACAAAACAGACATTCTCCAGCTCTCACTCTTGCTCATTCTCACTCTCTGGATCACAGTGGTCCCCACTCCTCTTTTCACGTTATTCAAAACAACTAACTAGCAGATGAATTCCCCTTCTTGCCCCTTCGAGTATAAACCTTCAGGATAGGAGGCCGAACAGATCTCATGATAAATCAATCCATTGCTTTAATCAAATCCAATATCAACAAACCATTTTATTTATACTCACTAGATAAATCCAATTTTTTATTCCTGAATGAGTCAACTATGTGGATAGGATTTATTTATGTACATATAGGGTCCAACTGTTCTTGTATTCAATCAAACCTTAAATACACACATGCCTTGGGTTATGAGGATCACAAAGAAAATTTTTAACTCAGAAGAAGCATTTTAAAATACCAGTATAATATTTCTACTGCAATTTTTTTTTTTTTTTTTTTTTTGAAAAATACTGCAAGAAGTTAATTTTCGGGCAAAAATCATTTTTTATCCTAAACTTAGAAGGTTGTATCAATTTTAACCTTGAACTTTCAATTTTATCAAATTGAACCCCAAACTTAGTAGATTGTATCATTTTTAACCCTAAGCATTCAATTTCATCATTTTTTTTTTTTTTTTTTGATAAGAAACCATGCTTTCATTGAGAAAAAAATGAAAGAATACAAGAGGGCATACAAAAAACAAGCCCGCCAAGAACACCCGCCTAGACTACAAGAACGGGTCCTAGTCCAAAATAATAAGACCGAGCTGATAATTACAAAAAAGCTTAGAAACGGACGCCCACAAAGACGAGTTAAATCTACTCGTCTCCCAAAGCTCATTCGTGGATTTCTCCACACCTCTAAAAATTCTACTATTCCTCGTAAGCCAAATACCCCACAAAATAGCAAAGAAGCACGCTTGCCATAGAACTCTCCCTTTGTCACGAAAAGGAGGATGCCAAATGATTTCCTCAAACATAGAAAAACAGTCAATGTTACGAGCCGAAGCAACCCCAAACACCCTGAAGAATTGACTCCAAATAGAACAGACAAAAGGACAATCCCAAGGCAAATGATCTAGGCCCTTCTCCTTACTCCTACAGAGGACACACCACTGCAGCCGCAACACGTAGGAGGAAAACCTTTGGATCCGATCCTGAGTATTCACCCAACCATGTAAAACTTCACACGCAAAGAACTTCACTTTCTTGGGAATTTTGACCTTCCATATCGAGGAGAAAATGGAGGCTCCTGGAGGAGGGGGAGACATAGAAAGAGAACGAAAAAAAAATGCACAAGAGAAGTCCTTAGAAGGCTTCGGGGTCTAGAACCGAGAGTCTCTTCTCCCAAGATGAAACGATTGGTCAGCCAAAAGGGAAAGGAGATTGACGACCTCTGCCACCTAGATCAGTGAGGGAACGGCGAAAGCCAAGGGCAGGAGAGGAGGAGTCGGAATCGGGGAAGACCAAGGCTACCGAATGCAACCTGTTCTCAGACAAGTGATAAAGATGAGGGAATAAAATGCTCAAAGGTTTATCCCCAACCCAAGAATCCTTCCAGAAATAGGTATTGGAACCATCCCCAATAGAACAATGGACAAGCTGAAAGAAGAGAGGAAATCCCAAAGCAATAGCAGGCTAGAGGTTTTTACTAGATCCTTTCAGCCTACCACTAGAGATCCACTCGAAAGGGTGCAGACCATACAAACTTGCAATGACCTTCCACCTCAGGGCGTCAGGCTCATTAAAGGAGCGCCACAACCATTTCCCCAAAAGGGCCTCGTTGTGAAGCCTCAGGTTGCCAATACCTAACCCCCCCAACTCAGGCTTAGAAACAACTTCCCATTTTATCAGGTGGGCCCCTCCACCCTCATCCACTCCTTCCCACAAGAAATTTCTCATAAGCCTCTCCAAAGACTTACACACAGACATGGGCAGTCTAAAGAGGGAAAGAAAGTAGAGAGGGATCCCACTCAGGACCGACTGAATCAGAGTCAATCTACCCCCTTTAGAAAAGTAGGCTTTTTTCTAGGAAGACAATCGCTTTTGAACCTTTTCCACCACTGGGTTCCCAAAGACCAACAATTTTGGGTTGCCCCCCAAAGGGAGGCCAAGGTCGGAGCACGAAAATTGATTCACCTCACAACCAGCTAGAGACGCCCAACACTCCAACTTAGAGACCTCACAATTGACCCCAAAAATAGATCTTTTATGGCAATTGATCCTGAGCCCTGAGATAGCTTCAAAGAAATAAATCCATTTAAGTTTCTAAAAGACTCTTCCTTAGCCGAACAAAAGAAGAGGGTGTCATCGGCAAATTGACGATGAGATAAATGGATACTATTCGACCCCACCTTAAAGCCCTCAATTACACCTTTATCCACCCCAGCCGAGACTAACCTCCTCAAAACATCCACCACCAGAATGAATAAAAAGGGGGACAAAGGATCCCCTTGCCTAAGGCCTCTCGGCTTCTCGTTGATCAAAATGGAGAAGTTTGCCGATCTAATGCAATTCGAAATCCAAGCTCTCCACTTATAACCAAACCCTTTCCTCTCTAGGATTTTATCAAGGAAATCCCAATCAACATGGTCAAAGGCTTTCTCAAAGTCTATTTTGAAAATCACTCCTTCTTCTTTTCTCTTCCTATAATCCTGAATAGCTTCGTTTGCAATCAAAACTTCGTCAAGGATTTGTCTCTCAGCAATGAAAACGATAGTTCCTGGAAGGACTTTCCTAAGTCTATTAGCTAGAACTTTAGCTATAATCTTATACAAGCTAGTCACGAGGTTGATGGGCCTGAAATCTTTAACCTGAGAAGCTTTATCCTTTTTAGGAACCAGGTAAACATAAGTCTCGCTCATAGACGCATCGATAACCCCTCTCAAATATTCACAGAAAACCTTCCATAGGTCAGGCTTAATATTCTCCCAATTTTCCTGATAAAAAGCCATAGTGAAACCATCGGGCCTAGGCGACTTGGCTTTATCAAAGCTGAAGACTACCTTACGACTTTCCTCCAACGTGAAGGGGGCTTCTAACTCCTCCTTATCTCTGCTCGGGATAGGGCTCCAATCCAAACCCTCCACAAAAGGCCTAGCGACCCGGGGGGGGGGGGGGGGCATAGAGCTTAGAAAAGAAAGAGATGATCTCTACTTCTAACTCAGGATCTTTCCTCACCACTTCCCCATTGCCTTTAATGAAAAGCTCGATACGGTTATTGCTTCTCCTACCCCTAGCATAGTTTTGGAAGAAAGTAGTATTGGCATCCCCATCTCTAACCCACCTCACTTTAGCTTTTTGCCTCCAGCTTATGTCCTCACTACGAATCAAGGTTTCGAGCTCTACCCTAAGGGAATCACGCTCTTTCCTCAACTCCGAAGACAAACCTCCCTGGACGTCTAACGCATCAATGGCTTTCATCCTAACCTACCACCTCCTCCTTTTTTCTCTTAGTTATTCCAAAAACCGAAAGGTTCCACTTCTTCAAAGCCTCTTTAAGGGATTTAAGCTTCCGGAGGAACCAAAATCCTTCCCAATTTCATCAAATTAAACCCAAACTTAGTCGATTCTATCAATTTTATCCCTAAACTTGCATAAATGTTGCAAGGTTTACCTTCGGTTAACTTTCTGTTTGAATCATTGCTAAAGCACATCATTGACTATTTCCTCATTTTTCTTTTTTTAATTCACATTGCACTTGGATTGGTTTCTTGTAAAAAATTATTGGATAAAGTTTTTATTTGAAGAAACTTTTGGTGTTGAGAAGTTGACATGAGTTTTCTTCATTTTCTTCTTATTGTGTTTGTGGGTTTTGTTGTCTTTTTTTTTAAGCTACTTAGAAGAACATGCAATTGTGGGATGATAGGAAAGCAATTTTGAGGTTCTTTTTTTCTCATATTTGCAGGATTTTTCTTGTTGCTAATACGATTTTTTTTTTCCTTTTTTTTTTTTTTTTATGAGAGGCTAATAAACAATGAAAAGTTTCAGCCTAGATTGTTGATTTTTTTAAATAAATAATTTTTCCAACAATTTCTTACAAAAAGACCAACTCCGGTGCAATGTGAATTTTTTTTTAAAAAAAAAAGAAATTGTCAATCACATGTTTTAATTGTGATTCAAATGAAAAACTAATCGATGGTCTACATTGCAACACTTTTGCAAGTTTGGGTTTAAATTGATATAACCTACTAAGTTTAGGGTTCAATTCGATGAAATTGCAAGTTTGAGGTTAGAATTGATACAACCAGCTTAGGGTTAAAAATGATTTTTTCCCTTAATTTTCCAACTGCTAGTGCAACTATGAAATAACATGCAAGTTTTAGGTTTGTAATAGGTTTTTTTAAGAAAGTTAAGGACTGAAGTAGAAAAGACAAAAGAGAGATGGGTCTCAAAAGCTAAGTGGTTGTTTGACCGAAGATTTGCTTTGAGTTTTAAATTTCATGGCTATTCTCCACTTCTTGTTCATTAACTAATAGACTTTGCTAACTGGTTTTACTGGCACGCTGATTTTGTGAAAATCGATCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGTGTTGGCAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGCATAAAGTACGTAATTATTGAATATCTTTTTTATTGCTTCTACTTGGTTGATTACTTCTCTTTGTGAATTATTTTGATTTCCAGGAAGGATGCCCCATATCCTCTTAATTATTGCTTATCCAGAGAGCCTTTTACTGAGAAGGCCTGGTAATCTGAGCGCATTAGCAAAAAGTGCTTATGGACTTGGGGTGGCCTTCACATTGTTAAATGTACATCATGTAATGATTCTTTTTTGAACTGTAGTTGTATTATGCCTCTTAGAGAGCCAAGAGTTTCCACTATAAAGCGATTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATGTTGATCAACTTCTCGTTCATAACTCTTCATTTTTATGTCTGGAAAATGATTTCAATTGTTGAGAGACTGCTTTTAATCAAAGCTATCTGCCCTGACCTTACAGGTTTGGATGGAAAAGTGGTTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGA

mRNA sequence

ATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCTTCAGGTTCAACATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGTGTTGGCAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGCATAAATTGTATTATGCCTCTTAGAGAGCCAAGAGTTTCCACTATAAAGCGATTCAGCACTTCAGGTTTGGATGGAAAAGTGGTTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGA

Coding sequence (CDS)

ATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCTTCAGGTTCAACATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGTGTTGGCAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGCATAAATTGTATTATGCCTCTTAGAGAGCCAAGAGTTTCCACTATAAAGCGATTCAGCACTTCAGGTTTGGATGGAAAAGTGGTTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGA

Protein sequence

MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Homology
[Close]
BLAST of Lcy08g006950 vs. ExPASy Swiss-Prot
Match: O80856 (Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana OX=3702 GN=ARPC1A PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTA-SGSTYGSQFSEAFGKLYG-QPRQGV 60
           MVIGVG+D NPM FA+D+ GIWSF+R++GE+K A S S+Y SQFSEAFGK YG Q +   
Sbjct: 261 MVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320

Query: 61  GNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLE 110
            ND+ ES   RG VH+NCIN I+ L +     + RFSTSGLDGKV IWDLE
Sbjct: 321 ANDASES---RGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLE 368

[Close]
BLAST of Lcy08g006950 vs. ExPASy Swiss-Prot
Match: Q9SJW6 (Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana OX=3702 GN=ARPC1B PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTA-SGSTYGSQFSEAFGKLYG-QPRQGV 60
           MVIGVG+D NPM FAAD+ GIWSF+R++GE+K A SGS+Y SQFSEAFGK YG Q +   
Sbjct: 261 MVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSYSSQFSEAFGKFYGSQSKSTT 320

Query: 61  GNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLE 110
            ND+ +S   RG VH+N I  I+PL +     + RFSTSGLDGK+ IWDLE
Sbjct: 321 ANDASDS---RGGVHDNSITSIVPLGKGGSPKVMRFSTSGLDGKIAIWDLE 368

[Close]
BLAST of Lcy08g006950 vs. ExPASy TrEMBL
Match: A0A1S3BM68 (Actin-related protein 2/3 complex subunit OS=Cucumis melo OX=3656 GN=LOC103491371 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIGVGFDC+PMAFAADERGIWSFVRFLGERKTASGS YGSQFSEAFGKLYGQPRQGVGN
Sbjct: 260 MVIGVGFDCHPMAFAADERGIWSFVRFLGERKTASGSKYGSQFSEAFGKLYGQPRQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCINCI+PL+EP VSTIKRFSTSGLDGKVVIWDLEGQ DLSQYL
Sbjct: 320 DSVESSRLRGCVHENCINCIVPLKEPGVSTIKRFSTSGLDGKVVIWDLEGQDDLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. ExPASy TrEMBL
Match: A0A6J1GLX8 (Actin-related protein 2/3 complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111455454 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.8e-58
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIG GFDCNPMAFAADERGIWSF+RFLGERKTASGS YGSQFSEAFGKLYGQ +QGVGN
Sbjct: 260 MVIGTGFDCNPMAFAADERGIWSFIRFLGERKTASGSKYGSQFSEAFGKLYGQSKQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCI CI+PLREP VSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Sbjct: 320 DSVESSRLRGCVHENCITCIVPLREPGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. ExPASy TrEMBL
Match: A0A6J1I2I5 (Actin-related protein 2/3 complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111468429 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 109/118 (92.37%), Postives = 112/118 (94.92%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIG GFDCNPMAFAADERGIWSF+RFLGERKTASGS YGSQFSEAFGKLYGQ +QGVGN
Sbjct: 260 MVIGTGFDCNPMAFAADERGIWSFIRFLGERKTASGSKYGSQFSEAFGKLYGQSKQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           D VESSRLRGCVHENCI CI+PLREP VSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Sbjct: 320 DPVESSRLRGCVHENCITCIVPLREPGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. ExPASy TrEMBL
Match: A0A6J1D3Z7 (Actin-related protein 2/3 complex subunit OS=Momordica charantia OX=3673 GN=LOC111016823 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 106/118 (89.83%), Postives = 111/118 (94.07%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIGVG+DCNPM FAADERGIWSF+RFLGERK  SGS YGSQFSEAFGKLYGQP+ GVGN
Sbjct: 260 MVIGVGYDCNPMVFAADERGIWSFIRFLGERKATSGSNYGSQFSEAFGKLYGQPKHGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCINCI+PLREP+ STIKRFSTSGLDGKVVIWDLEGQ DLSQYL
Sbjct: 320 DSVESSRLRGCVHENCINCIVPLREPKASTIKRFSTSGLDGKVVIWDLEGQGDLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. ExPASy TrEMBL
Match: A0A0A0KHX9 (Actin-related protein 2/3 complex subunit OS=Cucumis sativus OX=3659 GN=Csa_6G422800 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.1e-57
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIGVGFDC+PMAFAADERGIWSFVRFLGE+KTASGS YGSQFSEAFGKLYGQPRQGVGN
Sbjct: 260 MVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTASGSKYGSQFSEAFGKLYGQPRQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREP--RVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCINCI+PL+EP  R STIKRFSTSGLDGKVVIWDLEGQ DLSQYL
Sbjct: 320 DSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGLDGKVVIWDLEGQDDLSQYL 379

[Close]
BLAST of Lcy08g006950 vs. NCBI nr
Match: XP_008449504.1 (PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIGVGFDC+PMAFAADERGIWSFVRFLGERKTASGS YGSQFSEAFGKLYGQPRQGVGN
Sbjct: 260 MVIGVGFDCHPMAFAADERGIWSFVRFLGERKTASGSKYGSQFSEAFGKLYGQPRQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCINCI+PL+EP VSTIKRFSTSGLDGKVVIWDLEGQ DLSQYL
Sbjct: 320 DSVESSRLRGCVHENCINCIVPLKEPGVSTIKRFSTSGLDGKVVIWDLEGQDDLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. NCBI nr
Match: XP_023553744.1 (actin-related protein 2/3 complex subunit 1B-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIG GFDCNPMAFAADERGIWSF+RFLGERKTASGS YGSQFSEAFGKLYGQ +QGVGN
Sbjct: 260 MVIGTGFDCNPMAFAADERGIWSFIRFLGERKTASGSKYGSQFSEAFGKLYGQSKQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCI CI+PLREP VSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Sbjct: 320 DSVESSRLRGCVHENCITCIVPLREPGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. NCBI nr
Match: XP_022952913.1 (actin-related protein 2/3 complex subunit 1B isoform X1 [Cucurbita moschata] >KAG6572430.1 Actin-related protein 2/3 complex subunit 1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIG GFDCNPMAFAADERGIWSF+RFLGERKTASGS YGSQFSEAFGKLYGQ +QGVGN
Sbjct: 260 MVIGTGFDCNPMAFAADERGIWSFIRFLGERKTASGSKYGSQFSEAFGKLYGQSKQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCI CI+PLREP VSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Sbjct: 320 DSVESSRLRGCVHENCITCIVPLREPGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. NCBI nr
Match: XP_038886984.1 (actin-related protein 2/3 complex subunit 1A-like [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 2.9e-57
Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIGVGFDCNPMAFAADERGIWSF+RFLGERK ASGS YGSQFSEAFGKLYGQPRQGVGN
Sbjct: 260 MVIGVGFDCNPMAFAADERGIWSFIRFLGERKPASGSKYGSQFSEAFGKLYGQPRQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           DSVESSRLRGCVHENCIN I+PLRE  VSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Sbjct: 320 DSVESSRLRGCVHENCINSIVPLRERGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. NCBI nr
Match: XP_022969414.1 (actin-related protein 2/3 complex subunit 1B isoform X1 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 109/118 (92.37%), Postives = 112/118 (94.92%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSTYGSQFSEAFGKLYGQPRQGVGN 60
           MVIG GFDCNPMAFAADERGIWSF+RFLGERKTASGS YGSQFSEAFGKLYGQ +QGVGN
Sbjct: 260 MVIGTGFDCNPMAFAADERGIWSFIRFLGERKTASGSKYGSQFSEAFGKLYGQSKQGVGN 319

Query: 61  DSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 119
           D VESSRLRGCVHENCI CI+PLREP VSTIKRFSTSGLDGKVVIWDLEGQADLSQYL
Sbjct: 320 DPVESSRLRGCVHENCITCIVPLREPGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377

[Close]
BLAST of Lcy08g006950 vs. TAIR 10
Match: AT2G30910.1 (actin-related protein C1A )

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-32
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTA-SGSTYGSQFSEAFGKLYG-QPRQGV 60
           MVIGVG+D NPM FA+D+ GIWSF+R++GE+K A S S+Y SQFSEAFGK YG Q +   
Sbjct: 261 MVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320

Query: 61  GNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLE 110
            ND+ ES   RG VH+NCIN I+ L +     + RFSTSGLDGKV IWDLE
Sbjct: 321 ANDASES---RGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLE 368

[Close]
BLAST of Lcy08g006950 vs. TAIR 10
Match: AT2G30910.2 (actin-related protein C1A )

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-32
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTA-SGSTYGSQFSEAFGKLYG-QPRQGV 60
           MVIGVG+D NPM FA+D+ GIWSF+R++GE+K A S S+Y SQFSEAFGK YG Q +   
Sbjct: 261 MVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320

Query: 61  GNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLE 110
            ND+ ES   RG VH+NCIN I+ L +     + RFSTSGLDGKV IWDLE
Sbjct: 321 ANDASES---RGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLE 368

[Close]
BLAST of Lcy08g006950 vs. TAIR 10
Match: AT2G30910.3 (actin-related protein C1A )

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-32
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTA-SGSTYGSQFSEAFGKLYG-QPRQGV 60
           MVIGVG+D NPM FA+D+ GIWSF+R++GE+K A S S+Y SQFSEAFGK YG Q +   
Sbjct: 261 MVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320

Query: 61  GNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLE 110
            ND+ ES   RG VH+NCIN I+ L +     + RFSTSGLDGKV IWDLE
Sbjct: 321 ANDASES---RGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLE 368

[Close]
BLAST of Lcy08g006950 vs. TAIR 10
Match: AT2G31300.1 (actin-related protein C1B )

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-31
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MVIGVGFDCNPMAFAADERGIWSFVRFLGERKTA-SGSTYGSQFSEAFGKLYG-QPRQGV 60
           MVIGVG+D NPM FAAD+ GIWSF+R++GE+K A SGS+Y SQFSEAFGK YG Q +   
Sbjct: 261 MVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSYSSQFSEAFGKFYGSQSKSTT 320

Query: 61  GNDSVESSRLRGCVHENCINCIMPLREPRVSTIKRFSTSGLDGKVVIWDLE 110
            ND+ +S   RG VH+N I  I+PL +     + RFSTSGLDGK+ IWDLE
Sbjct: 321 ANDASDS---RGGVHDNSITSIVPLGKGGSPKVMRFSTSGLDGKIAIWDLE 368

The following BLAST results are available for this feature:
BLAST of Lcy08g006950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O808564.8e-3161.26Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9SJW61.8e-3060.36Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of Lcy08g006950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BM685.7e-5994.92Actin-related protein 2/3 complex subunit OS=Cucumis melo OX=3656 GN=LOC10349137... [more]
A0A6J1GLX84.8e-5893.22Actin-related protein 2/3 complex subunit OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1I2I51.8e-5792.37Actin-related protein 2/3 complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1D3Z72.4e-5789.83Actin-related protein 2/3 complex subunit OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A0A0KHX94.1e-5792.50Actin-related protein 2/3 complex subunit OS=Cucumis sativus OX=3659 GN=Csa_6G42... [more]
BLAST of Lcy08g006950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449504.11.2e-5894.92PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis melo][more]
XP_023553744.11.0e-5793.22actin-related protein 2/3 complex subunit 1B-like isoform X1 [Cucurbita pepo sub... [more]
XP_022952913.11.0e-5793.22actin-related protein 2/3 complex subunit 1B isoform X1 [Cucurbita moschata] >KA... [more]
XP_038886984.12.9e-5794.07actin-related protein 2/3 complex subunit 1A-like [Benincasa hispida][more]
XP_022969414.13.8e-5792.37actin-related protein 2/3 complex subunit 1B isoform X1 [Cucurbita maxima][more]
BLAST of Lcy08g006950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G30910.13.4e-3261.26actin-related protein C1A [more]
AT2G30910.23.4e-3261.26actin-related protein C1A [more]
AT2G30910.33.4e-3261.26actin-related protein C1A [more]
AT2G31300.11.3e-3160.36actin-related protein C1B [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..117
e-value: 1.7E-21
score: 78.3
NoneNo IPR availablePANTHERPTHR10709:SF2ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNITcoord: 1..108
IPR017383Actin-related protein 2/3 complex subunit 1PANTHERPTHR10709ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g006950.1Lcy08g006950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0006397 mRNA processing
biological_process GO:0030833 regulation of actin filament polymerization
biological_process GO:0008380 RNA splicing
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0015629 actin cytoskeleton
molecular_function GO:0051015 actin filament binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding