Lcy08g006610 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g006610
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr08: 8343622 .. 8344053 (+)
RNA-Seq ExpressionLcy08g006610
SyntenyLcy08g006610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAAAGAAAGAAAATCATAAAAAGACCATCAGAATCAATCACGACGGGGAAAACCCAAAGCTACAAGTTCATATCAAATGCAAATTTTACAGAACGAAGATAATTACACACTATAAAGCTTCTCCCACTTCCCTCTTCGAGAAACATGAACAATCAACAAGGAATCTGAGAAGTGAACCACTGCATGACATGAATTGGGGCTTTGATCAGCTCCAACGCAAGCTCCACTATCACCGTCAAGCACAAACAACAAGGACATATGCAAGTAAGCATCAATCTGCGTCCAAAACCCACAGAGAGAAACAGTCACGAATCGACAGAAGAATGAAAAACGCCAACAGATTCAGAAGAAACGAACCAAATCAAGAAAACCCAGAAGCTAAAAATGAAAGGGGTTTCGAGAAATTTACCCCACAATCCAAATAA

mRNA sequence

ATGAAGTTAAAGAAAGAAAATCATAAAAAGACCATCAGAATCAATCACGACGGGGAAAACCCAAAGCTACAAGTTCATATCAAATGCAAATTTTACAGAACGAAGATAATTACACACTATAAAGCTTCTCCCACTTCCCTCTTCGAGAAACATGAACAATCAACAAGGAATCTGAGAAGTGAACCACTGCATGACATGAATTGGGGCTTTGATCAGCTCCAACGCAAGCTCCACTATCACCGTCAAGCACAAACAACAAGGACATATGCAAGTAAGCATCAATCTGCGTCCAAAACCCACAGAGAGAAACAGTCACGAATCGACAGAAGAATGAAAAACGCCAACAGATTCAGAAGAAACGAACCAAATCAAGAAAACCCAGAAGCTAAAAATGAAAGGGGTTTCGAGAAATTTACCCCACAATCCAAATAA

Coding sequence (CDS)

ATGAAGTTAAAGAAAGAAAATCATAAAAAGACCATCAGAATCAATCACGACGGGGAAAACCCAAAGCTACAAGTTCATATCAAATGCAAATTTTACAGAACGAAGATAATTACACACTATAAAGCTTCTCCCACTTCCCTCTTCGAGAAACATGAACAATCAACAAGGAATCTGAGAAGTGAACCACTGCATGACATGAATTGGGGCTTTGATCAGCTCCAACGCAAGCTCCACTATCACCGTCAAGCACAAACAACAAGGACATATGCAAGTAAGCATCAATCTGCGTCCAAAACCCACAGAGAGAAACAGTCACGAATCGACAGAAGAATGAAAAACGCCAACAGATTCAGAAGAAACGAACCAAATCAAGAAAACCCAGAAGCTAAAAATGAAAGGGGTTTCGAGAAATTTACCCCACAATCCAAATAA

Protein sequence

MKLKKENHKKTIRINHDGENPKLQVHIKCKFYRTKIITHYKASPTSLFEKHEQSTRNLRSEPLHDMNWGFDQLQRKLHYHRQAQTTRTYASKHQSASKTHREKQSRIDRRMKNANRFRRNEPNQENPEAKNERGFEKFTPQSK
Homology
[Close]
BLAST of Lcy08g006610 vs. ExPASy TrEMBL
Match: A0A7J7CEG0 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW17G00055 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-06
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 10  KTIRINHDGENPKLQVHIKCKFYRTKIITHYKASPTSLFEKHEQSTRNLRSEPLHDMNWG 69
           K I  NH  ++PK+    +   Y   +  H K       +   +ST +LRSEPLHDMN  
Sbjct: 31  KDIHKNHSQKSPKISDKRQSTLY---VKIHNKQK-----DHENESTGDLRSEPLHDMNGC 90

Query: 70  FDQLQRKLHYHRQAQTTRTYASKHQSA 97
            DQLQ +LHY+   QTTRTYA + QSA
Sbjct: 91  LDQLQSQLHYYCHTQTTRTYACQQQSA 109

[Close]
BLAST of Lcy08g006610 vs. ExPASy TrEMBL
Match: A0A6J5Y8H0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50402 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 57 NLRSEPLHDMNWGFDQLQRKLHYHRQAQTTRTYASKHQS 96
          +LRSEPLH MNWGFDQ QR+LH +R AQT R YAS+ QS
Sbjct: 6  DLRSEPLHHMNWGFDQFQRQLHDNRHAQTARAYASQQQS 44

[Close]
BLAST of Lcy08g006610 vs. NCBI nr
Match: KAF5732528.1 (hypothetical protein HS088_TW17G00055 [Tripterygium wilfordii])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 10  KTIRINHDGENPKLQVHIKCKFYRTKIITHYKASPTSLFEKHEQSTRNLRSEPLHDMNWG 69
           K I  NH  ++PK+    +   Y   +  H K       +   +ST +LRSEPLHDMN  
Sbjct: 31  KDIHKNHSQKSPKISDKRQSTLY---VKIHNKQK-----DHENESTGDLRSEPLHDMNGC 90

Query: 70  FDQLQRKLHYHRQAQTTRTYASKHQSA 97
            DQLQ +LHY+   QTTRTYA + QSA
Sbjct: 91  LDQLQSQLHYYCHTQTTRTYACQQQSA 109

[Close]
BLAST of Lcy08g006610 vs. NCBI nr
Match: CAB4290412.1 (unnamed protein product [Prunus armeniaca] >CAB4320727.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 57 NLRSEPLHDMNWGFDQLQRKLHYHRQAQTTRTYASKHQS 96
          +LRSEPLH MNWGFDQ QR+LH +R AQT R YAS+ QS
Sbjct: 6  DLRSEPLHHMNWGFDQFQRQLHDNRHAQTARAYASQQQS 44

The following BLAST results are available for this feature:
BLAST of Lcy08g006610 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g006610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J7CEG06.8e-0643.68Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW17G00055 ... [more]
A0A6J5Y8H02.0e-0571.79Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50402 PE=4 S... [more]
BLAST of Lcy08g006610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5732528.11.4e-0543.68hypothetical protein HS088_TW17G00055 [Tripterygium wilfordii][more]
CAB4290412.14.1e-0571.79unnamed protein product [Prunus armeniaca] >CAB4320727.1 unnamed protein product... [more]
BLAST of Lcy08g006610 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g006610.1Lcy08g006610.1mRNA