Lcy08g005810 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g005810
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Plant protein of unknown function (DUF247)
Location	Chr08: 7283958 .. 7285181 (+)
RNA-Seq Expression	Lcy08g005810
Synteny	Lcy08g005810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTAACACAAATATTAGTTAAAAAAATGTTAATAAAAATTTCGGCTTTAATATAATGGTTTTTTTTTGTTTTGTTTTGTATTTTTTTTTTTGGAAAAATACACTTTTGGTCTTTGAGGTTTGGGTTAGGTTTCATTTTGGTCCCTGAATTCTCAAACTCGACAATTTAGCCCCTGAGGTTTGGGTTAGGTATCATTTTGGTCTCTGAGTTTTCAAACTCGACAATTTAGCCCCTGAGGTTTGGATTTCGTTTCATTTTAGTTCCTCCATCCAATTTTCTGTTAATATTTAACGGATTGTTGACGTGACATTGATTTTTTATTAAGAAAATTATTTTTTAATTTTTAAAATATAAATATATTAAAATAATAAAATTATTATTATTTTATATTATTTTTATTTCTTCTTCCCTCTCTTTCTTCTTCTTTTTGTCCAGCCACCACCCGTCGGTGACTATCTCCCGTGGGCCACAGTCGCCGGCCAGCTGACCGCTGTTGACAAACTATTTTTTTTCCTTTTTTTTTTCTCCTTCCTCTTCTCTTTCCTCCTATTCTTTCTGTTTTTTATTTTCTAAAAAAAAAAAAAAAAAAAGGAAAATTGTAAAAACCACTCCTGAAGTATTATGTTTGTAACAATTACACATCTATAGTTTCAAATGTAAAAATTAAACTCTCTAACTTTCAAAAGTGTAAAAATTAGAACCTTAAACTTTGAATGTTAAAATTAAATCTCCAATCTATCATAATTGTAAAAATTGGGTCCATCTTATATTTCTCCTTCTCTCCTGTTTTCTCTCTCTCTCCTTTCTCCCCTACCTCTCCATCCCTTGGATCACCCTATTTCTCTACTTTTTCTCAATCTATCGTAAATGTAAAAGTCCGACCCAAAGTTCCAGATCATTCCGCCGGCAAGACAGCTTCGTGAAGCCGGGATCGAATTTAGAAAGAGCTATTCCACGAGCTTCAAGGACGTGGATTTTGAAGGAGGCGTGTTGAGGCTTCCCCTCATGGTAGTGGACGATGACACCGAACCATCTTTGTTAAATGTGATGGCATTTGAGAAACTCCACGTCGGGACTGGGGCTGGCGGCAAAGTCACCTCTTTCATCATCCACATGGATAATTTGATAGACGCAGACAGAGATATTGATGATTGCCCTTGGAGACTGACCAAAGTGCGGCAGACTTGTTCAAACTTCTGGCCAAAGGAACGACTATGA

mRNA sequence

ATGTCCGACCCAAAGTTCCAGATCATTCCGCCGGCAAGACAGCTTCGTGAAGCCGGGATCGAATTTAGAAAGAGCTATTCCACGAGCTTCAAGGACGTGGATTTTGAAGGAGGCGTGTTGAGGCTTCCCCTCATGGTAGTGGACGATGACACCGAACCATCTTTGTTAAATGTGATGGCATTTGAGAAACTCCACGTCGGGACTGGGGCTGGCGGCAAAGTCACCTCTTTCATCATCCACATGGATAATTTGATAGACGCAGACAGAGATATTGATGATTGCCCTTGGAGACTGACCAAAGTGCGGCAGACTTGTTCAAACTTCTGGCCAAAGGAACGACTATGA

Coding sequence (CDS)

ATGTCCGACCCAAAGTTCCAGATCATTCCGCCGGCAAGACAGCTTCGTGAAGCCGGGATCGAATTTAGAAAGAGCTATTCCACGAGCTTCAAGGACGTGGATTTTGAAGGAGGCGTGTTGAGGCTTCCCCTCATGGTAGTGGACGATGACACCGAACCATCTTTGTTAAATGTGATGGCATTTGAGAAACTCCACGTCGGGACTGGGGCTGGCGGCAAAGTCACCTCTTTCATCATCCACATGGATAATTTGATAGACGCAGACAGAGATATTGATGATTGCCCTTGGAGACTGACCAAAGTGCGGCAGACTTGTTCAAACTTCTGGCCAAAGGAACGACTATGA

Protein sequence

MSDPKFQIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHVGTGAGGKVTSFIIHMDNLIDADRDIDDCPWRLTKVRQTCSNFWPKERL

Homology

[Close]

BLAST of Lcy08g005810 vs. ExPASy TrEMBL
Match: A0A6J1HB25 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111461183 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +LREAGI+F++S + S  DV  D +GGVL LP ++VDD+TE +LLNVM
Sbjct: 250 SDPECQVIPPATKLREAGIKFKRSKTGSLTDVFFDAKGGVLWLPRLMVDDNTESTLLNVM 309

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG KVTSF+I M NLID +RD+
Sbjct: 310 AFEKLHM--KAGRKVTSFVILMSNLIDDERDV 339

[Close]

BLAST of Lcy08g005810 vs. ExPASy TrEMBL
Match: A0A6J1KYV8 (UPF0481 protein At3g47200-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497633 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.6e-20
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +L EAGI+F++S + S +DV  D + GVL LP ++VDDDTE ++LNVM
Sbjct: 250 SDPECQVIPPATKLHEAGIKFKRSKTESLRDVWFDTKRGVLWLPQLMVDDDTESTMLNVM 309

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG KVTSF+I M NLID +RD+
Sbjct: 310 AFEKLHM--KAGRKVTSFVILMSNLIDDERDV 339

[Close]

BLAST of Lcy08g005810 vs. ExPASy TrEMBL
Match: A0A6J1KVQ6 (UPF0481 protein At3g47200-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497633 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.6e-20
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +L EAGI+F++S + S +DV  D + GVL LP ++VDDDTE ++LNVM
Sbjct: 249 SDPECQVIPPATKLHEAGIKFKRSKTESLRDVWFDTKRGVLWLPQLMVDDDTESTMLNVM 308

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG KVTSF+I M NLID +RD+
Sbjct: 309 AFEKLHM--KAGRKVTSFVILMSNLIDDERDV 338

[Close]

BLAST of Lcy08g005810 vs. ExPASy TrEMBL
Match: A0A067JUP9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23062 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 8   IIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHVG 67
           II  A +L EAGI F+KS + S KD+ F GGVLRLP++VVDD TE S LN++AFE+ HV 
Sbjct: 253 IIRSATELNEAGIRFKKSKTRSLKDISFRGGVLRLPVIVVDDATESSFLNLIAFERFHV- 312

Query: 68  TGAGGKVTSFIIHMDNLIDADRDI 92
            GAG ++TSFI  MDN+ID++RD+
Sbjct: 313 -GAGNEITSFIFFMDNIIDSERDV 334

[Close]

BLAST of Lcy08g005810 vs. ExPASy TrEMBL
Match: A0A7N0UAA4 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.3e-19
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAF 61
           +D   +II  A +L +AGI F+KS S+S +D+ F GGVLRLP ++VDD TEP  LN+MAF
Sbjct: 262 ADAGDEIIRSATELHDAGIRFKKSKSSSLRDISFRGGVLRLPFIMVDDTTEPMFLNLMAF 321

Query: 62  EKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           E+ HV  GAG  VTS+I  MDNLID+ RD+
Sbjct: 322 ERFHV--GAGNDVTSYIFLMDNLIDSARDV 349

[Close]

BLAST of Lcy08g005810 vs. NCBI nr
Match: XP_023513986.1 (UPF0481 protein At3g47200-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +LREAGI+F++S + S  DV  D +GGVL LP ++VDDDTE +LLNVM
Sbjct: 250 SDPESQVIPPATKLREAGIKFKRSKTDSLTDVFFDAKGGVLWLPQLMVDDDTESTLLNVM 309

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG +VTSF+I M NLID +RD+
Sbjct: 310 AFEKLHM--KAGRRVTSFVILMSNLIDDERDV 339

[Close]

BLAST of Lcy08g005810 vs. NCBI nr
Match: XP_023513987.1 (UPF0481 protein At3g47200-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +LREAGI+F++S + S  DV  D +GGVL LP ++VDDDTE +LLNVM
Sbjct: 249 SDPESQVIPPATKLREAGIKFKRSKTDSLTDVFFDAKGGVLWLPQLMVDDDTESTLLNVM 308

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG +VTSF+I M NLID +RD+
Sbjct: 309 AFEKLHM--KAGRRVTSFVILMSNLIDDERDV 338

[Close]

BLAST of Lcy08g005810 vs. NCBI nr
Match: KAG7025238.1 (UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-20
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +LREAGI+F++S + S  DV  D +GGVL LP ++VDD+TE +LLNVM
Sbjct: 601 SDPECQVIPPATKLREAGIKFKRSNTGSLTDVFFDAKGGVLWLPRLMVDDNTESTLLNVM 660

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG KVTSF+I M NLID +RD+
Sbjct: 661 AFEKLHM--EAGRKVTSFVILMSNLIDDERDV 690

[Close]

BLAST of Lcy08g005810 vs. NCBI nr
Match: KAG6592831.1 (UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-20
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +LREAGI+F++S + S  DV  D +GGVL LP ++VDD+TE +LLNVM
Sbjct: 250 SDPECQVIPPATKLREAGIKFKRSNTGSLTDVFFDAKGGVLWLPRLMVDDNTESTLLNVM 309

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG KVTSF+I M NLID +RD+
Sbjct: 310 AFEKLHM--EAGRKVTSFVILMSNLIDDERDV 339

[Close]

BLAST of Lcy08g005810 vs. NCBI nr
Match: XP_022960454.1 (UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-20
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 2   SDPKFQIIPPARQLREAGIEFRKSYSTSFKDV--DFEGGVLRLPLMVVDDDTEPSLLNVM 61
           SDP+ Q+IPPA +LREAGI+F++S + S  DV  D +GGVL LP ++VDD+TE +LLNVM
Sbjct: 250 SDPECQVIPPATKLREAGIKFKRSKTGSLTDVFFDAKGGVLWLPRLMVDDNTESTLLNVM 309

Query: 62  AFEKLHVGTGAGGKVTSFIIHMDNLIDADRDI 92
           AFEKLH+   AG KVTSF+I M NLID +RD+
Sbjct: 310 AFEKLHM--KAGRKVTSFVILMSNLIDDERDV 339

[Close]

BLAST of Lcy08g005810 vs. TAIR 10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-14
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 7   QIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHV 66
           Q+I    +LR AG+EF +  +  F D++F+ G L++P +++ D T+   LN++AFE+ H+
Sbjct: 318 QLIHCVTELRNAGVEFMRKETGHFWDIEFKNGYLKIPKLLIHDGTKSLFLNLIAFEQCHI 377

Query: 67  GTGAGGKVTSFIIHMDNLIDADRDI 92
            +    K+TS+II MDNLI++  D+
Sbjct: 378 KSSK--KITSYIIFMDNLINSSEDV 400

[Close]

BLAST of Lcy08g005810 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-14
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 7   QIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHV 66
           Q+I    +L+EAGI+FR+  +  F D+ F+ G L +P +++ D T+   LN++AFE+ H+
Sbjct: 348 QLIHCVTELKEAGIKFRRRKTDRFWDMQFKNGYLEIPRLLIHDGTKSLFLNLIAFEQCHI 407

Query: 67  GTGAGGKVTSFIIHMDNLIDADRDI 92
              +   +TS+II MDNLID+  D+
Sbjct: 408 --DSSNDITSYIIFMDNLIDSHEDV 430

[Close]

BLAST of Lcy08g005810 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 32/85 (37.65%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 7   QIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHV 66
           Q++    +LREAG++FRK  +  F D++F+ G L +P +++ D T+    N++AFE+ H+
Sbjct: 356 QLVHCVTELREAGVKFRKRKTDRFWDIEFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHI 415

Query: 67  GTGAGGKVTSFIIHMDNLIDADRDI 92
              +   +TS+II MDNLI++  D+
Sbjct: 416 --ESSNHITSYIIFMDNLINSSEDV 438

[Close]

BLAST of Lcy08g005810 vs. TAIR 10
Match: AT3G50180.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 7   QIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHV 66
           ++IP   +LR+AG +F+ + +  F D+ F  G L +P +++ D T+   LN++AFE+ H+
Sbjct: 401 RVIPTVTELRDAGFKFKLNKTDRFWDIKFSNGYLEIPGLLIHDGTKSLFLNLIAFEQCHI 460

Query: 67  GTGAGGKVTSFIIHMDNLIDADRDI 92
              +   +TS+II MDNLID+  DI
Sbjct: 461 --ESSNDITSYIIFMDNLIDSPEDI 483

[Close]

BLAST of Lcy08g005810 vs. TAIR 10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 7   QIIPPARQLREAGIEFRKSYSTSFKDVDFEGGVLRLPLMVVDDDTEPSLLNVMAFEKLHV 66
           Q+I    +LREAGI+FR   +  F D+ F+ G L +P +++ D T+    N++AFE+ H+
Sbjct: 381 QLIHCVTELREAGIKFRTRKTDRFWDIRFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHI 440

Query: 67  GTGAGGKVTSFIIHMDNLIDADRDI 92
              +   +TS+II MDNLID+  D+
Sbjct: 441 --DSSNDITSYIIFMDNLIDSSEDV 463

The following BLAST results are available for this feature:

BLAST of Lcy08g005810 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g005810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB25	1.7e-20	61.96	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111461183 PE=...	[more]
A0A6J1KYV8	8.6e-20	59.78	UPF0481 protein At3g47200-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1KVQ6	8.6e-20	59.78	UPF0481 protein At3g47200-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A067JUP9	3.3e-19	59.52	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23062 PE=4 SV=1	[more]
A0A7N0UAA4	4.3e-19	56.67	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of Lcy08g005810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513986.1	1.6e-20	61.96	UPF0481 protein At3g47200-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023513987.1	1.6e-20	61.96	UPF0481 protein At3g47200-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG7025238.1	3.6e-20	61.96	UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592831.1	3.6e-20	61.96	UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022960454.1	3.6e-20	61.96	UPF0481 protein At3g47200-like [Cucurbita moschata]	[more]

BLAST of Lcy08g005810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50160.1	7.0e-14	38.82	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	9.1e-14	40.00	Plant protein of unknown function (DUF247)	[more]
AT3G50170.1	2.0e-13	37.65	Plant protein of unknown function (DUF247)	[more]
AT3G50180.1	2.0e-13	38.82	Plant protein of unknown function (DUF247)	[more]
AT3G50130.1	3.5e-13	40.00	Plant protein of unknown function (DUF247)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 6..92 e-value: 1.2E-21 score: 77.4
IPR004158	Protein of unknown function DUF247, plant	PANTHER	PTHR31549	PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED	coord: 7..91
None	No IPR available	PANTHER	PTHR31549:SF65	OS08G0337800 PROTEIN	coord: 7..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g005810.1	Lcy08g005810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane