Lcy08g005600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g005600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Wound-responsive family protein
Location	Chr08: 7094539 .. 7095364 (+)
RNA-Seq Expression	Lcy08g005600
Synteny	Lcy08g005600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTCTGTTTGCATTGCGGCGCTTGAGTTAGAGACCAACACACGATAAGACTACAAAACCAGTGGGTGAGAAGCGAGTGGTTTGCTTCCCGTATATACTTTGGGCTCAAAATCAATTCATTTCACAAACCCAAAAAAAACCAAGTGAACTTAATTAGAAAAAAGGACCCACTTTTCTCATTTCTACCCTCACCCTTCACCCAACCTACCCATTATCAGCAAGGGTAATCCCGTCATTTTCCATCATCCCACTGCACCCACTACAAAAAAGTGCAAAACCCACCAACTTTCAGACATTAGTTTGTCAATCATGAGCCTGAGGTTTTTTCCCATTCCACGTTCTTCAAAACACATATAAATAAAACGAACCCCTCACGCTTTACCTTAATTTCATCAAACAACTTTACGAAACTTGAAACAGAAACTCACACAAATCAAAGAAAAATGTGTGCCGGAAAATGTTGGACGACGGCGGCGGCGAGTATCGGCGCGGTGGAGGCTTTGAAAGATCAAGGCCATTTGTGCCGGTGGAATTCTGCTGTGAGGGCTCTGTCTCAGCCCAACAAGCTTTCTTCTTCTTCTGCTTCTTCTTCATCGGCGGCTGTTCGAGATTCGAGTGAAGTTAAAAGGGAAGATCATAGTAAAGCTAAGCAATCTGAGGAGTCTCTTAGAACTGTTATGTACTTGAGCTGTTGGGGTCCTTATTGATTTTGAGTTTTAGTGTGGAAGAATAATTTATCAACTTTTATGTGTAACATTTTTGTAGATTTTATTTTCATCCATATAGCAATCGAATAATAATGACGAGAATTAATTTATTATGACC

mRNA sequence

GTTTTCTGTTTGCATTGCGGCGCTTGAGTTAGAGACCAACACACGATAAGACTACAAAACCAGTGGGTGAGAAGCGAGTGGTTTGCTTCCCGTATATACTTTGGGCTCAAAATCAATTCATTTCACAAACCCAAAAAAAACCAAGTGAACTTAATTAGAAAAAAGGACCCACTTTTCTCATTTCTACCCTCACCCTTCACCCAACCTACCCATTATCAGCAAGGGTAATCCCGTCATTTTCCATCATCCCACTGCACCCACTACAAAAAAGTGCAAAACCCACCAACTTTCAGACATTAGTTTGTCAATCATGAGCCTGAGGTTTTTTCCCATTCCACGTTCTTCAAAACACATATAAATAAAACGAACCCCTCACGCTTTACCTTAATTTCATCAAACAACTTTACGAAACTTGAAACAGAAACTCACACAAATCAAAGAAAAATGTGTGCCGGAAAATGTTGGACGACGGCGGCGGCGAGTATCGGCGCGGTGGAGGCTTTGAAAGATCAAGGCCATTTGTGCCGGTGGAATTCTGCTGTGAGGGCTCTGTCTCAGCCCAACAAGCTTTCTTCTTCTTCTGCTTCTTCTTCATCGGCGGCTGTTCGAGATTCGAGTGAAGTTAAAAGGGAAGATCATAGTAAAGCTAAGCAATCTGAGGAGTCTCTTAGAACTGTTATGTACTTGAGCTGTTGGGGTCCTTATTGATTTTGAGTTTTAGTGTGGAAGAATAATTTATCAACTTTTATGTGTAACATTTTTGTAGATTTTATTTTCATCCATATAGCAATCGAATAATAATGACGAGAATTAATTTATTATGACC

Coding sequence (CDS)

ATGTGTGCCGGAAAATGTTGGACGACGGCGGCGGCGAGTATCGGCGCGGTGGAGGCTTTGAAAGATCAAGGCCATTTGTGCCGGTGGAATTCTGCTGTGAGGGCTCTGTCTCAGCCCAACAAGCTTTCTTCTTCTTCTGCTTCTTCTTCATCGGCGGCTGTTCGAGATTCGAGTGAAGTTAAAAGGGAAGATCATAGTAAAGCTAAGCAATCTGAGGAGTCTCTTAGAACTGTTATGTACTTGAGCTGTTGGGGTCCTTATTGA

Protein sequence

MCAGKCWTTAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSSASSSSAAVRDSSEVKREDHSKAKQSEESLRTVMYLSCWGPY

Homology

[Close]

BLAST of Lcy08g005600 vs. ExPASy TrEMBL
Match: A0A5D3C541 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003710 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MCAGKCWTT-AAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSSSASSSSAA--V 60
          MCAGK WTT AAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSSS+SS+S+A  +
Sbjct: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSNSSASVM 60

Query: 61 RDSSEVKRE-DHSKAKQSEESLRTVMYLSCWGPY 88
           DSSEVKRE DHSK KQSEESLRTVMYLSCWGPY
Sbjct: 61 ADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 94

[Close]

BLAST of Lcy08g005600 vs. ExPASy TrEMBL
Match: A0A0A0K1Q6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046680 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-22
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MCAGKCWTT-AAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSSSAS---SSSAA 60
          MCAGK WTT AAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSSS+S   SS++ 
Sbjct: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSSKSSASV 60

Query: 61 VRDSSEVKRE-DHSKAKQSEESLRTVMYLSCWGPY 88
          + DSSEVKRE DHSK KQSEESLRTVMYLSCWGPY
Sbjct: 61 IADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 95

[Close]

BLAST of Lcy08g005600 vs. ExPASy TrEMBL
Match: A0A4S8IGX5 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t11240 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.2e-14
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 10  AAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSSASSSSAAVRDSSEVKREDHSKAK 69
           AAAS+GAVEALKDQG LCRWN A R+L Q  K   ++  S S A+R SS +      KAK
Sbjct: 52  AAASVGAVEALKDQGGLCRWNYAFRSLHQRAK---NNVGSLSQAIRVSSSISDRSSEKAK 111

Query: 70  QSEESLRTVMYLSCWGP 87
           QSEESLR VMYLSCWGP
Sbjct: 112 QSEESLRKVMYLSCWGP 125

[Close]

BLAST of Lcy08g005600 vs. ExPASy TrEMBL
Match: A0A5C7HE07 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020506 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 11  AASIGAVEALKDQGHLCRWNSAVRAL-----------SQPNKLSSSSASSSSAAVRDSSE 70
           AAS+ AVEA+KDQG  CRWN  +R+L           SQ  KLSSSS+S SSAA   S++
Sbjct: 92  AASVAAVEAMKDQG-FCRWNYTIRSLHQHVRNNMRSASQSKKLSSSSSSPSSAAAAVSTK 151

Query: 71  VKREDHSKAKQSEESLRTVMYLSCWGP 87
           ++     KAKQSEESLRTVMYLSCWGP
Sbjct: 152 IREVQSKKAKQSEESLRTVMYLSCWGP 177

[Close]

BLAST of Lcy08g005600 vs. ExPASy TrEMBL
Match: A0A1S2XCR3 (uncharacterized protein LOC101509121 OS=Cicer arietinum OX=3827 GN=LOC101509121 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 57/95 (60.00%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 3  AGKCWTTAAASIGAVEALKDQGHLCRWNSA-----------VRALSQPNKLSSSSASSSS 62
          + + W TAA S+G VEALKDQG +CRWN A           VR+ SQ NKLSSSS SSSS
Sbjct: 4  SSRAW-TAAGSVGVVEALKDQG-ICRWNHAIKSLQNHLKNNVRSFSQANKLSSSS-SSSS 63

Query: 63 AAVRDSSEVKREDHSKAKQSEESLRTVMYLSCWGP 87
          A V +S+  K+     AKQSEESLRTVMYLSCWGP
Sbjct: 64 AMVSNSNRQKQ----NAKQSEESLRTVMYLSCWGP 91

[Close]

BLAST of Lcy08g005600 vs. NCBI nr
Match: KAG6589196.1 (hypothetical protein SDJN03_17761, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 71/88 (80.68%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MCAGKCWTT-AAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSSASSSSAAVRDSSE 60
          MC+GK WTT AAASIGAVEALKDQGHLCRWNSAVRALSQPNKL      SSS+AVRD  E
Sbjct: 1  MCSGKYWTTAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLPPPPPLSSSSAVRDCRE 60

Query: 61 VKREDHSKAKQSEESLRTVMYLSCWGPY 88
             EDHSK KQSEES+RTVMYLSCWGPY
Sbjct: 61 ---EDHSKPKQSEESIRTVMYLSCWGPY 85

[Close]

BLAST of Lcy08g005600 vs. NCBI nr
Match: KAG7022896.1 (hypothetical protein SDJN02_16632, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-26
Identity = 71/85 (83.53%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 4   GKCWTT-AAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSSASSSSAAVRDSSEVKR 63
           GK WTT AAASIGAVEALKDQGHLCRWNSAVRALSQPNKL     SSSS AVRD  E   
Sbjct: 166 GKYWTTAAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLPPPLPSSSSPAVRDCRE--- 225

Query: 64  EDHSKAKQSEESLRTVMYLSCWGPY 88
           EDHSK KQSEESLRTVMYLSCWGPY
Sbjct: 226 EDHSKPKQSEESLRTVMYLSCWGPY 247

[Close]

BLAST of Lcy08g005600 vs. NCBI nr
Match: KAA0031601.1 (hypothetical protein E6C27_scaffold139G003690 [Cucumis melo var. makuwa] >TYK07053.1 hypothetical protein E5676_scaffold13G003710 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MCAGKCWTT-AAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSSSASSSSAA--V 60
          MCAGK WTT AAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSSS+SS+S+A  +
Sbjct: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSNSSASVM 60

Query: 61 RDSSEVKRE-DHSKAKQSEESLRTVMYLSCWGPY 88
           DSSEVKRE DHSK KQSEESLRTVMYLSCWGPY
Sbjct: 61 ADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 94

[Close]

BLAST of Lcy08g005600 vs. NCBI nr
Match: KAE8645761.1 (hypothetical protein Csa_020242 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 6.5e-22
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1   MCAGKCWTT-AAASIGAVEALKDQGHLCRWNS--AVRAL-SQPNKLSSSSAS---SSSAA 60
           MCAGK WTT AAASIGAVEALKDQGHL R N+   VRA+ S  NKLSSSS+S   SS++ 
Sbjct: 147 MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSSKSSASV 206

Query: 61  VRDSSEVKRE-DHSKAKQSEESLRTVMYLSCWGPY 88
           + DSSEVKRE DHSK KQSEESLRTVMYLSCWGPY
Sbjct: 207 IADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 241

[Close]

BLAST of Lcy08g005600 vs. NCBI nr
Match: THU47034.1 (hypothetical protein C4D60_Mb09t11240 [Musa balbisiana])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 10  AAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSSASSSSAAVRDSSEVKREDHSKAK 69
           AAAS+GAVEALKDQG LCRWN A R+L Q  K   ++  S S A+R SS +      KAK
Sbjct: 52  AAASVGAVEALKDQGGLCRWNYAFRSLHQRAK---NNVGSLSQAIRVSSSISDRSSEKAK 111

Query: 70  QSEESLRTVMYLSCWGP 87
           QSEESLR VMYLSCWGP
Sbjct: 112 QSEESLRKVMYLSCWGP 125

[Close]

BLAST of Lcy08g005600 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 52/93 (55.91%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 5  KCWTTAAASIGAVEALKDQGHLCRWN-----------SAVRALSQPNKLSSSSASSSSAA 64
          K W T A SIGAVEALKDQ  LCRWN           + VR++SQ  + SSSS    SAA
Sbjct: 6  KAW-TVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSV---SAA 65

Query: 65 VRDSSEVKREDHSKAKQSEESLRTVMYLSCWGP 87
          V  S E       KAK++EESLRTVMYLSCWGP
Sbjct: 66 VTSSGE-----SEKAKKAEESLRTVMYLSCWGP 89

[Close]

BLAST of Lcy08g005600 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-13
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 3  AGKCWTTAAASIGAVEALKDQGHLCRWNSAVRALSQPNKLSSSSASSSSAAVRDSSEVKR 62
          A K W   AASIGAVEALKDQ  +CRWN  +R+ +Q   L ++  S S A    SS +  
Sbjct: 4  ASKTW-MVAASIGAVEALKDQLGVCRWNYVIRSANQ--YLRNNLRSVSQAKKLSSSSI-- 63

Query: 63 EDHSKAKQSEESLRTVMYLSCWGP 87
          +  +K KQ+EESLRTVMYLSCWGP
Sbjct: 64 DYTNKTKQAEESLRTVMYLSCWGP 82

The following BLAST results are available for this feature:

BLAST of Lcy08g005600 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g005600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C541	1.4e-22	77.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K1Q6	3.1e-22	75.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046680 PE=4 SV=1	[more]
A0A4S8IGX5	9.2e-14	63.64	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t11240 PE=4 SV=...	[more]
A0A5C7HE07	1.6e-13	58.62	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020506 PE=4 SV=1	[more]
A0A1S2XCR3	2.7e-13	60.00	uncharacterized protein LOC101509121 OS=Cicer arietinum OX=3827 GN=LOC101509121 ...	[more]

BLAST of Lcy08g005600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589196.1	1.1e-26	80.68	hypothetical protein SDJN03_17761, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7022896.1	9.7e-26	83.53	hypothetical protein SDJN02_16632, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0031601.1	2.9e-22	77.66	hypothetical protein E6C27_scaffold139G003690 [Cucumis melo var. makuwa] >TYK070...	[more]
KAE8645761.1	6.5e-22	75.79	hypothetical protein Csa_020242 [Cucumis sativus]	[more]
THU47034.1	1.9e-13	63.64	hypothetical protein C4D60_Mb09t11240 [Musa balbisiana]	[more]

BLAST of Lcy08g005600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10270.1	1.4e-14	55.91	Wound-responsive family protein	[more]
AT4G10265.1	5.9e-13	54.76	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 11..86 e-value: 3.9E-27 score: 95.1
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 3..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g005600.1	Lcy08g005600.1	mRNA