Lcy08g005360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g005360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Actin cytoskeleton-regulatory complex protein
Location	Chr08: 6923090 .. 6923671 (+)
RNA-Seq Expression	Lcy08g005360
Synteny	Lcy08g005360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATCCCATATTCAGAAGCCTCTTGAGATTAATCAAAGCTTCTTCATTTTCAAATCCCATGGCCAAAATCTGCCTAATTTGCTTGATCGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCAATTGCCACAGACACAGACCGCCGCCCTCTCTCGGCGGCGCCGGAGCCATCGGAGACCTGCAGCAGAGAAGGGTCGGAAGTGGCGGAGGCGCCGGAGATCCGGCGGATGGGAAAGCACCATGGGGATAAGTCGGTGGCCGGCGGAGGAGTCATCATCGGCGGCCTTGTAACGGCTATTTTTGCAGCGGTCTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCGTTGAGATTTTATCCCAATTTTTTTAGATTTTGCCTTACGGAATCTCTCTCTGCAGATACATATATTCTTTTGATTCTTAAATTTACAGATTGTTGAGTAGTGTTTGGTTCTGAATGTAAAAAGTAATGTTTATAAAGAGAAGAAGCTCTGAATTTCCAAATAAATGGGGTTTATTTTCTTTAATTGATTTTACTGATATTGAAGTGAATAATGAAA

mRNA sequence

CCAAAATCCCATATTCAGAAGCCTCTTGAGATTAATCAAAGCTTCTTCATTTTCAAATCCCATGGCCAAAATCTGCCTAATTTGCTTGATCGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCAATTGCCACAGACACAGACCGCCGCCCTCTCTCGGCGGCGCCGGAGCCATCGGAGACCTGCAGCAGAGAAGGGTCGGAAGTGGCGGAGGCGCCGGAGATCCGGCGGATGGGAAAGCACCATGGGGATAAGTCGGTGGCCGGCGGAGGAGTCATCATCGGCGGCCTTGTAACGGCTATTTTTGCAGCGGTCTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCGTTGAGATTTTATCCCAATTTTTTTAGATTTTGCCTTACGGAATCTCTCTCTGCAGATACATATATTCTTTTGATTCTTAAATTTACAGATTGTTGAGTAGTGTTTGGTTCTGAATGTAAAAAGTAATGTTTATAAAGAGAAGAAGCTCTGAATTTCCAAATAAATGGGGTTTATTTTCTTTAATTGATTTTACTGATATTGAAGTGAATAATGAAA

Coding sequence (CDS)

ATGGCCAAAATCTGCCTAATTTGCTTGATCGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCAATTGCCACAGACACAGACCGCCGCCCTCTCTCGGCGGCGCCGGAGCCATCGGAGACCTGCAGCAGAGAAGGGTCGGAAGTGGCGGAGGCGCCGGAGATCCGGCGGATGGGAAAGCACCATGGGGATAAGTCGGTGGCCGGCGGAGGAGTCATCATCGGCGGCCTTGTAACGGCTATTTTTGCAGCGGTCTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCGTTGA

Protein sequence

MAKICLICLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVR

Homology

[Close]

BLAST of Lcy08g005360 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MAKICLI-CLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG 60
           MAK CL+ CLIVAEILLIQAM SIAT TD  PLSAAPEP+E  +REGS+VAEAPEIRR+G
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTD-LPLSAAPEPAEKGTREGSDVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 102
           KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV
Sbjct: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101

[Close]

BLAST of Lcy08g005360 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-32
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MAKICLI-CLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG 60
           MAKICL+ CLIV EI LIQA+ +    T   PLS APE SE  +REGSEVAEAPEIRR+G
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 102
           KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDSV
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 102

[Close]

BLAST of Lcy08g005360 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 64/118 (54.24%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 1   MAKICLICLIVAEILLIQAMASIATDTDRRPLS---------------AAPEPSETC--- 60
           M ++ L CLI+AEIL++QAMA  +  ++  P                  A +P  +    
Sbjct: 1   MGRLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAES 60

Query: 61  --SREGSEVAEAPEIRRMGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGV 99
             S+E S+VAEAP IRRMGKHH DKS+AGGGVIIGGL TAIFA VFCYIRVTRKRDGV
Sbjct: 61  PESKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

[Close]

BLAST of Lcy08g005360 vs. ExPASy TrEMBL
Match: A0A5N5GJH8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_035756 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MAKICLICLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG- 60
           MA++ LICL++A  LL+ A+A+  +DTD     AA   S++ S E   VAEAP +RR+G 
Sbjct: 1   MARLGLICLVLAGFLLVSAIATDKSDTDHSASIAAEPSSDSESMEEGVVAEAPSLRRLGP 60

Query: 61  ----KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGV 99
               +   DKSVAGGG+IIGGLVT IFAAVFCYIRVTRKR GV
Sbjct: 61  AEKSEKKADKSVAGGGIIIGGLVTTIFAAVFCYIRVTRKRGGV 103

[Close]

BLAST of Lcy08g005360 vs. ExPASy TrEMBL
Match: A5BAN6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MAKICLICLIVAEILLIQAMA-SIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG 60
          M ++ L+CL++AEIL++QA+A     D     +  A +PS     E  EVAEAP  RR+G
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKR 96
          KHH D+S+AGGGVIIGGL TAIFAAVFCYIR+TR+R
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of Lcy08g005360 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 2.7e-35
Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MAKICLI-CLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG 60
           MAK CL+ CLIVAEILLIQAM SIAT TD  PLSAAPEP+E  +REGS+VAEAPEIRR+G
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTD-LPLSAAPEPAEKGTREGSDVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 102
           KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV
Sbjct: 61  KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101

[Close]

BLAST of Lcy08g005360 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-31
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MAKICLICLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMGK 60
           MAKI L+CLI+A+ILLIQAMAS AT T    +SAAPEPSET + EG  +AEAPEIRR+GK
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSH-VSAAPEPSETDNVEGPGLAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 102
           HH DKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDSV
Sbjct: 61  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 100

[Close]

BLAST of Lcy08g005360 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 7.6e-30
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MAKICLICLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMGK 60
           MAKI L+ LI+A+ILLIQAMAS AT T    +SAAPEPSET + EG  +AEAPEIRR+GK
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSH-VSAAPEPSETDNVEGPGLAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 102
           HH DKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDSV
Sbjct: 61  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 100

[Close]

BLAST of Lcy08g005360 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-25
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MAKICLI-CLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG 60
          MAKICL+ CLIV EI LIQA+ +    T   PLS APE SE  +REGSEVAEAPEIRR+G
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIR 91
          KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of Lcy08g005360 vs. NCBI nr
Match: KAB2613440.1 (hypothetical protein D8674_035756 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-17
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MAKICLICLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMG- 60
           MA++ LICL++A  LL+ A+A+  +DTD     AA   S++ S E   VAEAP +RR+G 
Sbjct: 1   MARLGLICLVLAGFLLVSAIATDKSDTDHSASIAAEPSSDSESMEEGVVAEAPSLRRLGP 60

Query: 61  ----KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGV 99
               +   DKSVAGGG+IIGGLVT IFAAVFCYIRVTRKR GV
Sbjct: 61  AEKSEKKADKSVAGGGIIIGGLVTTIFAAVFCYIRVTRKRGGV 103

[Close]

BLAST of Lcy08g005360 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-09
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 2  AKICLICLIVAEILLIQAMASIATDTDRRPLSAAPEPSETCSREGSEVAEAPEIRRMGKH 61
          AK  ++C ++  +  + A +S A     R L     P E    E  EV+   E  R G H
Sbjct: 3  AKHIVLCFLLTYVFSMAAASSEAEPPATRKLGRHEWPGE--EAEAPEVSHLEETVRRGHH 62

Query: 62 HG--DKSVAGGGVIIGGLVTAIFAAVFCYIRVTRK 95
          H   ++SVAGGGVI+GGL T     VFCYIR TRK
Sbjct: 63 HSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of Lcy08g005360 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g005360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C590	1.3e-35	87.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3N0	5.1e-32	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A2N9IXN3	1.7e-19	54.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
A0A5N5GJH8	1.6e-17	57.28	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A5BAN6	2.1e-17	57.29	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]

BLAST of Lcy08g005360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031619.1	2.7e-35	87.25	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAG6572323.1	5.3e-31	80.20	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	7.6e-30	79.21	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8645753.1	4.3e-25	75.82	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAB2613440.1	3.3e-17	57.28	hypothetical protein D8674_035756 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Lcy08g005360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	7.9e-09	41.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..63
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..100
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g005360.1	Lcy08g005360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane