Lcy08g005120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g005120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	NAC domain-containing protein
Location	Chr08: 6734830 .. 6736101 (-)
RNA-Seq Expression	Lcy08g005120
Synteny	Lcy08g005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGCGACGAGTGGTGATGTCAAACAACAAAAAGTGAATGGAGGTGACGTTTCGACATTCCCCTATATTCTGATTCCGCACTAGAGCGAGAAACCAACTTCTATTTCGAAGAGGACCAAGAGATTAAGTTGTCCCCAAGAAACACACAAAAGTCGCTAGTACTTCTTCTATCATCAGGACAATTAGCCTAGTCGGCATCTGTATAACACATCAAAGACATTGAGGATGAACGAGTTGTTGGGAGTGCGACCAAAGTCCCATATTGGCTAGACAAGGGGATGATCATGGGTAATATAAGGGAGGACAAGTATCTCCATTGGTATGAAACCTTTTAGGTAGAACCAAAGCAAAATTAACATGAGAGAAGTGAAAATAAACTGTTGCATAAAGTCATAATGATTCCTAGTAATTAAAATATCATCGACATAAATCAAAACAATCACTAAAATGCCATTAGAAGCGGTAAATCCCCAATTACCAAAGACATGTATTTATGTTTTTCATGAACCATTGCTCTTGGACTTTGCTTTAGACCATAAGAGCTTTCTGCAACTTACCCACATATGAGGAAAATTTTTTATCCACGAAACTAGGCGGCTGTACCATATAGACATCCTCAACAAGATCACCATTAAGAATAAAAATATTGTGAACATCGAGTTGTTTAATCGGACACTAATTTTAGACGCAATGCTTATGACAATTCGCATTGTTGCAGGCTTAATTATAGGACTAAAGGTCTCAAAATAATCTAGGGGTGAAATGAGCCGAACCGAACCGGTTCGGTTCGATTTTCCACTTTAATTATGATCGAACCGAACCGAACCGATAGGGTTCAGTTTGGTCCTCAGCTCTTCTTTGCCCAAACCAATACGCGTGTTTTCCTTTTTTTTTTTTTTTGAGAAAACGTGTTTTCCTATTTTAGTTCAGAGTCTTTAGACTTTAGGGTTTCGTTCACGCAGACTTCGTCTTCCTCGTGCCTCTCTTCGACTTCGTCTTCCTGGCCTGTCGCCTCTTCGTTTTTGTCTTCCTCGCATGTCGCCTCTCCGTCTTCGTTTTTGTTCGCCTCTTTGATTTTCTACCACGTTTTCTGGAGGAACAAGAAAACGCCGCAAAGTCCACATCGACGAGGAAGGCAACGAAACACGCTGGCACAAAACCGGGAAACCCGACCCGTTTTCGTCGGCGGCGCCGTCAAAGGTTTCAAGAAAATCCTCATCCTCTACACCAACTACGGCCGCCAAAGAAAGCCGGAAAAAACCAACTAG

mRNA sequence

ATGAAATGCGACGAGTGGAACAAGAAAACGCCGCAAAGTCCACATCGACGAGGAAGGCAACGAAACACGCTGGCACAAAACCGGGAAACCCGACCCGTTTTCGTCGGCGGCGCCGTCAAAGGTTTCAAGAAAATCCTCATCCTCTACACCAACTACGGCCGCCAAAGAAAGCCGGAAAAAACCAACTAG

Coding sequence (CDS)

ATGAAATGCGACGAGTGGAACAAGAAAACGCCGCAAAGTCCACATCGACGAGGAAGGCAACGAAACACGCTGGCACAAAACCGGGAAACCCGACCCGTTTTCGTCGGCGGCGCCGTCAAAGGTTTCAAGAAAATCCTCATCCTCTACACCAACTACGGCCGCCAAAGAAAGCCGGAAAAAACCAACTAG

Protein sequence

MKCDEWNKKTPQSPHRRGRQRNTLAQNRETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN

Homology

[Close]

BLAST of Lcy08g005120 vs. ExPASy Swiss-Prot
Match: O49459 (NAC domain-containing protein 73 OS=Arabidopsis thaliana OX=3702 GN=NAC073 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-09
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPV  GG V+G+KKIL+LYTNYG+Q+KPEKTN
Sbjct: 159 KTRPVLAGGRVRGYKKILVLYTNYGKQKKPEKTN 192

[Close]

BLAST of Lcy08g005120 vs. ExPASy Swiss-Prot
Match: Q9M0F8 (NAC domain-containing protein 75 OS=Arabidopsis thaliana OX=3702 GN=NAC075 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPV V G  KG KKIL+LYTN+G+ RKPEKTN
Sbjct: 155 KTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTN 188

[Close]

BLAST of Lcy08g005120 vs. ExPASy Swiss-Prot
Match: F4HY61 (NAC domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=NAC010 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-07
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 15  HRRGRQRNTLAQNRETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           H+ G+ R  L+Q+ ET          GFKKIL+LYTNYGRQ+KPEKTN
Sbjct: 172 HKTGKTRPVLSQSGET----------GFKKILVLYTNYGRQKKPEKTN 209

[Close]

BLAST of Lcy08g005120 vs. ExPASy TrEMBL
Match: A5C117 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_029763 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-10
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 643 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 676

[Close]

BLAST of Lcy08g005120 vs. ExPASy TrEMBL
Match: A0A438DRD1 (NAC domain-containing protein 73 OS=Vitis vinifera OX=29760 GN=NAC073_1 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-10
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 192 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 225

[Close]

BLAST of Lcy08g005120 vs. ExPASy TrEMBL
Match: A0A438IGM0 (NAC domain-containing protein 73 OS=Vitis vinifera OX=29760 GN=NAC073_0 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-10
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 192 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 225

[Close]

BLAST of Lcy08g005120 vs. ExPASy TrEMBL
Match: F6HM41 (NAC domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g00350 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-10
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 192 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 225

[Close]

BLAST of Lcy08g005120 vs. ExPASy TrEMBL
Match: A0A1S3UMG5 (NAC domain-containing protein 73 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766970 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQ+KPEKTN
Sbjct: 162 KTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTN 195

[Close]

BLAST of Lcy08g005120 vs. NCBI nr
Match: XP_002278661.1 (PREDICTED: NAC domain-containing protein 73 isoform X2 [Vitis vinifera] >XP_034672358.1 NAC domain-containing protein 73-like [Vitis riparia])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 159 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 192

[Close]

BLAST of Lcy08g005120 vs. NCBI nr
Match: RVW38014.1 (NAC domain-containing protein 73 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 192 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 225

[Close]

BLAST of Lcy08g005120 vs. NCBI nr
Match: CBI30617.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 159 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 192

[Close]

BLAST of Lcy08g005120 vs. NCBI nr
Match: XP_010655461.1 (PREDICTED: NAC domain-containing protein 73 isoform X1 [Vitis vinifera] >RVW95888.1 NAC domain-containing protein 73 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 192 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 225

[Close]

BLAST of Lcy08g005120 vs. NCBI nr
Match: CAN77470.1 (hypothetical protein VITISV_029763 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPVFVGGAVKGFKKIL+LYTNYGRQRKPEKTN
Sbjct: 643 KTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTN 676

[Close]

BLAST of Lcy08g005120 vs. TAIR 10
Match: AT4G28500.1 (NAC domain containing protein 73 )

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPV  GG V+G+KKIL+LYTNYG+Q+KPEKTN
Sbjct: 159 KTRPVLAGGRVRGYKKILVLYTNYGKQKKPEKTN 192

[Close]

BLAST of Lcy08g005120 vs. TAIR 10
Match: AT4G29230.1 (NAC domain containing protein 75 )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPV V G  KG KKIL+LYTN+G+ RKPEKTN
Sbjct: 155 KTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTN 188

[Close]

BLAST of Lcy08g005120 vs. TAIR 10
Match: AT1G28470.1 (NAC domain containing protein 10 )

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-08
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 15  HRRGRQRNTLAQNRETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           H+ G+ R  L+Q+ ET          GFKKIL+LYTNYGRQ+KPEKTN
Sbjct: 172 HKTGKTRPVLSQSGET----------GFKKILVLYTNYGRQKKPEKTN 209

[Close]

BLAST of Lcy08g005120 vs. TAIR 10
Match: AT5G56620.1 (NAC domain containing protein 99 )

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 29  ETRPVFVGGAVKGFKKILILYTNYGRQRKPEKTN 63
           +TRPV + G  +G KKIL+LYTN+G+ R+PEKTN
Sbjct: 153 KTRPVMINGQQRGCKKILVLYTNFGKNRRPEKTN 186

The following BLAST results are available for this feature:

BLAST of Lcy08g005120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49459	3.6e-09	73.53	NAC domain-containing protein 73 OS=Arabidopsis thaliana OX=3702 GN=NAC073 PE=2 ...	[more]
Q9M0F8	2.6e-07	70.59	NAC domain-containing protein 75 OS=Arabidopsis thaliana OX=3702 GN=NAC075 PE=2 ...	[more]
F4HY61	7.4e-07	56.25	NAC domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=NAC010 PE=2 ...	[more]

BLAST of Lcy08g005120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5C117	9.8e-10	94.12	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_029763 PE=4 SV=1	[more]
A0A438DRD1	9.8e-10	94.12	NAC domain-containing protein 73 OS=Vitis vinifera OX=29760 GN=NAC073_1 PE=4 SV=...	[more]
A0A438IGM0	9.8e-10	94.12	NAC domain-containing protein 73 OS=Vitis vinifera OX=29760 GN=NAC073_0 PE=4 SV=...	[more]
F6HM41	9.8e-10	94.12	NAC domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g00350 PE...	[more]
A0A1S3UMG5	2.2e-09	91.18	NAC domain-containing protein 73 OS=Vigna radiata var. radiata OX=3916 GN=LOC106...	[more]

BLAST of Lcy08g005120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002278661.1	2.0e-09	94.12	PREDICTED: NAC domain-containing protein 73 isoform X2 [Vitis vinifera] >XP_0346...	[more]
RVW38014.1	2.0e-09	94.12	NAC domain-containing protein 73 [Vitis vinifera]	[more]
CBI30617.3	2.0e-09	94.12	unnamed protein product, partial [Vitis vinifera]	[more]
XP_010655461.1	2.0e-09	94.12	PREDICTED: NAC domain-containing protein 73 isoform X1 [Vitis vinifera] >RVW9588...	[more]
CAN77470.1	2.0e-09	94.12	hypothetical protein VITISV_029763 [Vitis vinifera]	[more]

BLAST of Lcy08g005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28500.1	2.5e-10	73.53	NAC domain containing protein 73	[more]
AT4G29230.1	1.8e-08	70.59	NAC domain containing protein 75	[more]
AT1G28470.1	5.3e-08	56.25	NAC domain containing protein 10	[more]
AT5G56620.1	1.2e-07	61.76	NAC domain containing protein 99	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR31079:SF20	NAC DOMAIN-CONTAINING PROTEIN 10	coord: 25..62
IPR044799	NAC domain-containing protein SOG1-like	PANTHER	PTHR31079	NAC DOMAIN-CONTAINING PROTEIN 73	coord: 25..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g005120.1	Lcy08g005120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0000976	transcription cis-regulatory region binding