Lcy08g005090 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g005090
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ubiquitin-like domain-containing protein
Location	Chr08: 6704605 .. 6706950 (+)
RNA-Seq Expression	Lcy08g005090
Synteny	Lcy08g005090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCTAGGGTTTCGAGCCAACTTATCTTCCATGGCATATTGATCCTTCGAACTCCCGCCGATATCAAAGCTCCCTGCCAATCTCGAAGGATCCAGCCCAACCCACCACGGCGTCTCTCTGTATTCCATGATGCATCTCCCCTAAGCTTCCAGCAACCAGGTTGGATCGAAACACATCTCCTCAAAGTTGTCGAATGGGTTGAAGGGGTAGCAATCACATTCTGAATGGAAGTTCTTGATTGTGCTTTTGGTTGTTGTATCTGATTGAGTTGCAAAGAGTCCAAATTTTCCAAACGATTATTAAACTTGTTTGAATATTCTGGTCGATCAGAGCTCCCTCTCAGTCGTTACGAAAATGTCTGGATTCAGCCACTCTTCCCTGTCATTCAAACATTCTAAGTTAGTAAGAGGAAAACGTTTAGCCCACACCCCCTTGGTCATCTTGCAGTTCCAAAAGAGGTGGGAGCCACATATCTTTATCTTCGGAGGTAGTTTATAACTGGATGAGGAGGTCTCCCATATTAGGCCTAGTTGGCGTATTTAGAATGGTTGTGGCATCTTCTTCCAAAAAGGAAGCTCGTATTTCCACCACTAACATTTTGAGTTGGGCCACTGTAAAGTGTCGAATATTAGGATGTGTGGAAATTGGTTTGGCTGACCCCTCCTTCAGAATCCAAGGATCCTTAGAGGCATCGACCTTAAAACCATTTCCAACTCTCCGTTTGTAGAGAGCTCTCTTCCCTAGATGATGCTCCTCCAAGTGTAAGATGGATTAGACCCAGATTAGACCCCAGCGTGGCTTTGAGAAAGTATCCTGTTTAAAAGTACCGCCCACAAAGCACTTTAGCTAGAAGACTATTTGGGAATTTAATTAAGCGCCAACTTTGCTCAGCTAACATAGCTTGATTAAAAAGAATTAGATCTCTAAACCCCAGCTAACATAGCTTGATTAAAAAGAATTAGATCTCTAAAGCCCAGACCTCCACAGTTTTTATGAAGACAAAGCTTCTTCCAGCTAAGCCAGTGATTCTTCTTTTCGGAATGAGACGAACCCCACCGAAACCTAGCACAAAGAGCATTTAGATCATTACATAGGGTAAGCGGAAAGTTAAAGCAAGTCATAACATAATTAGGTATAGCTTGAGCCATGGATTTAATAAGCACTTCTTTGAGAAAAACTTCACTTTCCATCCTTGTAGAGCTCCCTAAACTCGATACTGATGTTGTTGAGGATCTCCTTCAGGTCCGTTTTGATGGGAAGCACCATTCCCTTAGAATTTCACATATCTTGGCACGGATGCCACTTTTTCTAATACATATCTTAAATCTCAACATTATATTTGAATTTGAGCCGGATTTGCGGTATTATTGTCAATTTTCAAACTTTTTGCTATATTTGGAATATTTGGAATTGCATATTTATTTTATACTATTAAAGTAAATGTCTCCTCACTATATCTCAAACAACACAAAAAATTCTAACCCTCTACCTTTAAATTTATGAATTTAATTGAATAGAAAATTTTGGTAATTAATGCCATTAATTCCTTAAAATTTACATTTTACAATACATTCATATGTTCTTTCCATTGGCTCCTTGGTTTTATTATTCACACATAATACTACAATTCTTTTTTTTTTTTTTTTGACAGATAATACTACAATTCTTTTTCTTATAGAAAGAGTCAATTTTAAAATAACAATAATCTTTTTTTATATATTGAATAACTTCTAAATCTTACCCTCGTGGTTGCTAATTATGAGTATATATAAAGATAAAATGACAAAATATGGTGGATTTTTTTTTTAATTTGGAATAATTTTGGAATTAATTCAATATATATATATATATAGAGAGAGAGAGAGAGAGAAATTGTATCTGATGAGCTTAATTCCCGCAAGTCCACACCAGATTCATTTCCAATCTCCAAACTAACCACCGAAAATGCAGCAATTATGAACACTTATTTTTGGCGATTTATTTTTTTGTGAAATAATAATTAGGGGGAAAAATTAAAAAGGAGGAGGATGAAATTGGTGGTGGAAAACTTGACTGGTTCTCTGTTCTACGTTCAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAAGCCAGATCACTGCCCACCACAACCTCCCTTCTGACCGTCTGATCTTCGTTCCTGACGACAATCGTGGCCGTCCGATCTCGGAGGCAGATGATGGAATCTCGCTCGTTGATTTTGGCGTCGGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGACGACAGTGGCGATGATCTTGATGCTCGCCAACTCTTCTTTGCCTGTCCTGATCTTCTTCTCTTCCAGTAG

mRNA sequence

ATGAGGGCTAGGGTTTCGAGCCAACTTATCTTCCATGGCATATTGATCCTTCGAACTCCCGCCGATATCAAAGCTCCCTGCCAATCTCGAAGGATCCAGCCCAACCCACCACGGCGTCTCTCTGTATTCCATGATGCATCTCCCCTAAGCTTCCAGCAACCAGGTTGGATCGAAACACATCTCCTCAAAGTTGTCGAATGGGTTGAAGGGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAAGCCAGATCACTGCCCACCACAACCTCCCTTCTGACCGTCTGATCTTCGTTCCTGACGACAATCGTGGCCGTCCGATCTCGGAGGCAGATGATGGAATCTCGCTCGTTGATTTTGGCGTCGGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGACGACAGTGGCGATGATCTTGATGCTCGCCAACTCTTCTTTGCCTGTCCTGATCTTCTTCTCTTCCAGTAG

Coding sequence (CDS)

ATGAGGGCTAGGGTTTCGAGCCAACTTATCTTCCATGGCATATTGATCCTTCGAACTCCCGCCGATATCAAAGCTCCCTGCCAATCTCGAAGGATCCAGCCCAACCCACCACGGCGTCTCTCTGTATTCCATGATGCATCTCCCCTAAGCTTCCAGCAACCAGGTTGGATCGAAACACATCTCCTCAAAGTTGTCGAATGGGTTGAAGGGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAAGCCAGATCACTGCCCACCACAACCTCCCTTCTGACCGTCTGATCTTCGTTCCTGACGACAATCGTGGCCGTCCGATCTCGGAGGCAGATGATGGAATCTCGCTCGTTGATTTTGGCGTCGGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGACGACAGTGGCGATGATCTTGATGCTCGCCAACTCTTCTTTGCCTGTCCTGATCTTCTTCTCTTCCAGTAG

Protein sequence

MRARVSSQLIFHGILILRTPADIKAPCQSRRIQPNPPRRLSVFHDASPLSFQQPGWIETHLLKVVEWVEGVEDDATVSDLRSQITAHHNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIYIFFCPLDDDSGDDLDARQLFFACPDLLLFQ

Homology

[Close]

BLAST of Lcy08g005090 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-30
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIYIF 130
           V+D ATV DLR++I++  +LPSDRL+FVPD +RGR IS ADDGISLVDFG+ DGS IYIF
Sbjct: 17  VDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGISLVDFGLRDGSLIYIF 76

Query: 131 FCPLDDDSGDDLDARQLFFACPDLLLFQ 159
           FCPLDDD GDD+DARQLFF CPDLLLFQ
Sbjct: 77  FCPLDDDGGDDVDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Lcy08g005090 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIYIF 130
           V+D ATV DLR++I++  +LPSDRL+FVPD +RGR IS ADDG SLVDFG+ DGS IY+F
Sbjct: 17  VDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGTSLVDFGLRDGSLIYVF 76

Query: 131 FCPLDDDSGDDLDARQLFFACPDLLLFQ 159
           FCPLD++  DDLDARQLFF CPDLLLFQ
Sbjct: 77  FCPLDEEGVDDLDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Lcy08g005090 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAH---HNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHI 130
           VEDDATVSDLR+QI AH   HNLPS RLIF+PD N  R IS+ DDGISLVDFG+ DGSHI
Sbjct: 17  VEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVDDGISLVDFGLRDGSHI 76

Query: 131 YIFFCPLDDDSGDDLDARQLFF-ACPDLLLF 158
           YIFF PL DD GDD++AR+ FF +  DLLLF
Sbjct: 77  YIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Lcy08g005090 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.7e-23
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHN--LPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIY 130
           V+DDATVSDL+++I+AHHN  LPSDRLIF+ DDN GRPIS+ DDG SLVD GV DGSHIY
Sbjct: 17  VKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDDGFSLVDCGVKDGSHIY 76

Query: 131 IFFCPLD-----DDSGDDLD----ARQLFFACPDLLLF 158
           IFF PLD     D  GDD D    +R  FF C ++LLF
Sbjct: 77  IFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of Lcy08g005090 vs. ExPASy TrEMBL
Match: A0A5D3BP45 (Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00410 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 53  QPGWIETHLLKVVEW-VEGVEDDATVSDLRSQITAH-HNLPSDRLIFVPDDNRGRPISEA 112
           QP   + +++KV+E  +   E        R+QI AH  NLPS  LIF+ D +  R ISE 
Sbjct: 546 QPQKKDANIVKVIERPLTENERFMLAKAARTQIIAHQRNLPSHCLIFILDHDPERLISEV 605

Query: 113 DDGISLVDFGVGDGSHIYIFFCPLDDDSGDDLDARQLFF 150
           DD ISLVDFG+ DGS+IYIFFCPLD+D GDD++AR+ FF
Sbjct: 606 DDKISLVDFGLHDGSNIYIFFCPLDNDGGDDIEARRFFF 644

[Close]

BLAST of Lcy08g005090 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-29
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIYIF 130
           V+D ATV DLR++I++  +LPSDRL+FVPD +RGR IS ADDGISLVDFG+ DGS IYIF
Sbjct: 17  VDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGISLVDFGLRDGSLIYIF 76

Query: 131 FCPLDDDSGDDLDARQLFFACPDLLLFQ 159
           FCPLDDD GDD+DARQLFF CPDLLLFQ
Sbjct: 77  FCPLDDDGGDDVDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Lcy08g005090 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-28
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIYIF 130
           V+D ATV DLR++I++  +LPSDRL+FVPD +RGR IS ADDG SLVDFG+ DGS IY+F
Sbjct: 17  VDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGTSLVDFGLRDGSLIYVF 76

Query: 131 FCPLDDDSGDDLDARQLFFACPDLLLFQ 159
           FCPLDD+  DDLDARQLFF CPDLLLFQ
Sbjct: 77  FCPLDDEGVDDLDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Lcy08g005090 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-27
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIYIF 130
           V+D ATV DLR++I++  +LPSDRL+FVPD +RGR IS ADDG SLVDFG+ DGS IY+F
Sbjct: 17  VDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGTSLVDFGLRDGSLIYVF 76

Query: 131 FCPLDDDSGDDLDARQLFFACPDLLLFQ 159
           FCPLD++  DDLDARQLFF CPDLLLFQ
Sbjct: 77  FCPLDEEGVDDLDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Lcy08g005090 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-25
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAH---HNLPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHI 130
           VEDDATVSDLR+QI AH   HNLPS RLIF+PD N  R IS+ DDGISLVDFG+ DGSHI
Sbjct: 17  VEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVDDGISLVDFGLRDGSHI 76

Query: 131 YIFFCPLDDDSGDDLDARQLFF-ACPDLLLF 158
           YIFF PL DD GDD++AR+ FF +  DLLLF
Sbjct: 77  YIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Lcy08g005090 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHN--LPSDRLIFVPDDNRGRPISEADDGISLVDFGVGDGSHIY 130
           V+DDATVSDL+++I+AHHN  LPSDRLIF+ DDN GRPIS+ DDG SLVD GV DGSHIY
Sbjct: 17  VKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDDGFSLVDCGVKDGSHIY 76

Query: 131 IFFCPLD-----DDSGDDLD----ARQLFFACPDLLLF 158
           IFF PLD     D  GDD D    +R  FF C ++LLF
Sbjct: 77  IFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of Lcy08g005090 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 6.7e-07
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 71  VEDDATVSDLRSQITAHHNLPSDRLIFV-PDDNRGRPISEADDGISLVDFGVGDGSHIYI 130
           V +DATV  ++ +I     LP  RLI V  D+   R + E +D + L D GVG+ SHIY+
Sbjct: 17  VSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDDMMLRDLGVGEDSHIYL 76

Query: 131 FF 132
           FF
Sbjct: 77  FF 78

The following BLAST results are available for this feature:

BLAST of Lcy08g005090 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g005090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPI4	7.4e-30	76.14	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A6J1ERN4	1.2e-27	71.59	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A0A0K6V6	1.5e-25	71.43	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1C3E5	6.7e-23	64.29	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3BP45	1.4e-15	52.53	Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Lcy08g005090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989504.1	1.5e-29	76.14	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KAG6589175.1	8.4e-28	72.73	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	2.5e-27	71.59	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
KGN43536.1	3.0e-25	71.43	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
XP_022136124.1	1.4e-22	64.29	uncharacterized protein LOC111007894 [Momordica charantia]	[more]

BLAST of Lcy08g005090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	6.7e-07	43.55	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 71..130 e-value: 1.57457E-6 score: 41.4278
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 70..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g005090.1	Lcy08g005090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process