Lcy08g004960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g004960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein RRP6-like 3 isoform X1
LocationChr08: 6463276 .. 6472402 (-)
RNA-Seq ExpressionLcy08g004960
SyntenyLcy08g004960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGAAACGATTTGTCGTCCAATTGCGGATAAATATAATATAAGAAAATTCACCTCTCTGACGTGGGCAACACGTTGACATCAGTGAGTTTCAATACGACACCGTTCTGGGACGGCGTAAACATCCTGTCCGGAGTCGAAACCGTCGCCGCCGTATGAGAAATCGAAGCTCCAAATCAGAGAAACACAGGCAAAAGAACGAAAACGGAGGCCATTGATTCGGATGGAGCTTCAACACAAGGTCAAAATCGCTCTAGTCGTAGCGTCTTTTGCAGCTCTAACAATCTTATTTACAGCCAGACGCCGCCGGAAGCAAAGGAGAGTTCGTAGTTCGTGTTATTTACGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAGCACTTTAAGCTCAATATGAATACAGGTATAACTTTGTTCGTTACTCTATTTCAAATATGATATTGTTTTTAGCTGCTGAGACTGTGTTGTTATTAGTAGCTTATGGAGTTTTTAATCGAGGAACGATGTGATAAGGAGCTATAATTGATGTTGTTAGTTGCATTTAGCATTGTTTGTTTGGGAAAAAGATGGTTTAATTGCTTCTTTAAGCTGAATAATTTTTGTGGAGCAACAGGATGTAGGGAAATGGAAATCTGGAAGATTTCTATTCTTTTTTAAAACTTAATAGTTAGCGAAAAGTTGAGTCATATCATAGGTGTTTGAAAGTTACGTATTCTTCATCAATGGATATCGTTTGTTTTCTCTTCAATCTTTAAGCAGCATTTTTATAAAAGATTTTGCAATGGTGGTTCTCATGTTCTTTTAAGGAGGTTGACTGAGTGAAGGGAGTTTTTTCTTGCAGACAACGATGTAAACGCTCATCCCTACGAGTCAGAAATACTATCATTGTTGGAAAATTCTTTGCCTGAATTTGATTTTATTAGTGAAAGAAAAGATTTTACTTTGAGTGACGCTTATGTTTGGGTTGAGAACGAGTCCCAATTGGAAGAACTCGTGGATGTGTTAAATAAAGAAACGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCTTTAGTACAGGTAAATTTATTTTCTCTATCCCTCTCTCTCTGTCACTCTCAAAGGAGCTTTAGTATACGTAAGTTGATGAGTCTTTCCGTGCAATCCCCGTCTCTTTAATTGTCACGATCATTTTCTGTCCTTTTATTTTGTTTGAAGCAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCAATGAATCTTCTTCGTCCTGTCTTTGCCAATAGTCGTATTTGCAAGGTATCAAAATATATGCTTCGGTTATGGTTTAAAGGCTTGATTTAGACAAGCTTGGTATCTAAATTGAAAGCAAGAAATGTTTCAGAACACCATCAATTTGGTATTGATGAGATAAGTAGAGCAGTTACATCTGGGGGAATTCCATTGATCTTCTTCTTTGGATTAATATTTTATTTGGTATTAGAAAACTTGTTGGTTAATGAATGCAAGGTTCCAATTAAATTAGTTTTTGTGTTTAGGTGTTTCACGGTGCTGATAATGACATTCTCTGGCTTCAAAGGGACTTCCATATATATGTAGTCAATTTATTTGACACTGCAAAGGTGAGAATTTGCTGTTCAAAGGAGAGGAACTTTGTTTGGGGGTGGGGTGTGGAATTGAAACTTTTCACTTCTCATGTGTGAACGAGTGAGAGGTCGTTTTTGCCTGTTTTCATCTTGTGCTTGCTGTTATAATGTAGGCTTGCGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTTGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTACAGGTTGGACATCTTGTCTTAAAATATACTGATGTAGTATGAGAATCAACATCTTGACCATCAGATTTCAGATATAAGATAATCACTATTATCTAGTTAAAGTAGTGGTAGCAGGTATTTGATTTTGAAATATTAATTTGCCTGATCATACATGTAAGAATTTATGAAACAAGCATTTTATAACACGTCTATCGTCGTGTTGTATTCTATTTGAAGGTAGTAACATTGCACTAGTTGCATGTTTAACTGCCCAAGATTACCATAGAGCATATTTCAATGATCAGTAAATTAACAAAACCTATTTTATTTTTAGCTTCAACTTAAATAAGGCGAGGATTGATTCATACCCTATGGCCTTTCTTGTTGTAAATACAACAACCTTTTTGGTCTTGCTTATTTGTGATTACTCATTAATGGTCAGCGAGAAGACTGGAGACAACGACCCCTATCAGCAGATATGGTGCAGTATGCTAGGACAGATGCCCACTATCTCCTATATATTGCAAACTGTTTGCTTTCTGAGCTGAAACAGGTTGATGGTATGTCTTGGATCTTGCGTTTGTGTTTGCTGCCATTCACTTTCTATAACTAGTTTACATGTAAATGTTGAGAAAATAACAGTGGATAGAAGATGAACATGAGGATATCAATAGATAAGGAAGCAAATAGGGACGCATTCGAGTAGTGTACTAAAATTTTTTGTTAGTTCAACATTGTGCAATTTGCATAATAAACTCAATGATGAAAATATTACCCTTGATATTTTGTTAACATTAATGTCTTAATATTGGCAAGAACCATATTTCTCTTCCATCTTGTGAAAATGTGTAAATTTTTAATTCAAAAATGGTTTTAGAAATTTATTCATATCTGTTCTTTTTATAGTATGTTAGACAAAGTGTAGAGTTAAGATGAAGGTTGTATAATTTATTTGAGTGGCTTTAAAATTTAATTTATTAATTCATTTTTTTTTTATAAACTTAATGATTTTTGTATTATTCAGGATTGTTCTTTGACACTCAACATCTGTGTTGATACTTCCATAAATTTGAGATCTTGATATTTTGGTTGACGTTGATGCTTACTTCTTGCTTATGCTTGTACTATTCCCATTTCTCATGTCATGACTTTGACATTGTCATCTTTGATTACTCCAAACATTCGGGAACATTTTTAATTTCCTTGTGTAGCCTCAGTTTTAGGCCAGAGACAGTAATTAACAATTATAGTTGGTTACCTTCAAATTATATATCCTTCCATATCATCAGATATCTAAGTGCATTAATGTATCAGAAAACTCTTCCACCGATGATAAATTCAATTTTCTTCTCGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTCTATGCAAAAGAGACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCTCGTAACTTAAACAGTCAATTAGTTTCCTGTAAAACTCAGGTAAGCTGCTTTCTTGACAACTTTGATGTTATATCATTTGAAGTAGTAGCACAATTCAATTTAGGATATTCTATCACCCGAGTTTGAACTTTCAGTTTCAGGATCATGTGAGGAGAATATGTGCTTGGCGAGACTTAATGGTCAGTAAATTATATATAAAAAAAAAAAAATCAAGAACATAATTGGTCATTCTCTAAGGTTTTAATATTTATTTTACTGTTATTTTTTCCCAATTTGTTCTTATTCCATCGAACATTTTATGTCTAAGGGGGTTTGGTGCTTTCTACTTGAGATGGAACCATTTTGGTACTTAGTAATAGCTTGTGCTAATTCTTAATAAGATGGAAGGTAGGGGTTGGTTCACTGAGTGCCTTAAGACTACTTCAAGATGCCCCTGGAATTTCATTGATAAATGTAAATATTTGATGGGGAAGCATTTCATTTCAAAGTTGGTATAACGGTATGGTCGAAGAAGTCTTCCTTTGTGGGACTGTAACCTTCCAGATGATGGGACAGAAGATTGGATCTCTGTGATGAACTCCTTGAAAGTTGAATCATTATACTGTAGTGAGGTTCAAAATTTTATTTTATGAACTTTTCAATAACACAACTTTTTGGAGCATCCAACATAGCTTGTTTTGTAACTATGTCATTGATTCGATCCATTTAAATTGGAAGGTTTTTTTTGTAATCCTTCTTTAGGGAGAAGGGATGCCTTATCCCTTTGTTCGCTAGGTTGTTTTGTATTGTGTTGGCTCGGTGCCTCCATCAATGATATTATCGTTTCTTATAAAAAAATATATATATTTTATGAAGATTGGATGCTTGTGTACTTGGCATGTCGTTCTATAGTCATCTTACATAGAAAGCAAATCTTTTTCCTATATGGGTGACTAGAGTTGTAAGGAGGAATACATGTCCCAAAAAGTAGAAATCTTTATTTGGTTTCTAGTTCTGAAATACCACTGACATGATTTGAAAAAGAAACTATCTCAATTGCCTCCTTTCAAGTTGGCTAAAAATTAGATATCATGAAGGTCAGACTTGCCTTGTCATTTCATTGTGCAACCTGACACATTACCCCCTATCTCCTCGTTCCTTCTGCTTATAAGGGCCATAATAAGTAAAGTAAATCAACTATAATTGTTGCTTTAAAAGGAATCTCTTAGTGATAGTACAAGCATGTAATCATATTAGCAATCTTTAGCTTGTCTTTCTCAGATATTCTTTCATTAGCAGAATGACAAAACTTCCATTATGGCTGCTTACCTGAATCTGAGATTGTCATTTCATTTCAGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTGTAGCTCTTGCAACTCAAGTGTCAAAAAATACGATGGGATTATATGCAACTATCGCACAAGCTGATTTGAATGTGGATTTGAGTCCGAGTTTGCTTCTTCCATCTCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTCCTCCGTGACAAGTCTGGCGACCTTGATAATATTTTTTTGGGGATCTTACAGAACTGCATCGGTTCTAATGGCAGTTGCCCCCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGGCAATATCTAAACAAAATTATAGAAAGAATGCAAAGCAAATATCCAAAAAAGCTTCAAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGACGCTTGCTGTGCTACTGTGATCGGCGAAAACTTGAATGGTTGGTTAGCATCTCATAGTTTCATTTAAGTATAAATGTAACTGGTAATACTAATGTGTTTGACACCAAGCAACTATCTTTATATTTAAACAGGTACTTGCGCCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGCTTCTTTTTGAACCTAAAGGTCGTCCAGAGGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCATTATTTACGTTATCGAATAATCCCCTCATGCTACAGAATACACTTTCCTGAGCATTTAAAAAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGTCATGAAGTTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGATCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACTAAGGAGGCCTTTGATTTAGTTGAGACGTCTGACTCCGGAACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTATTGCGGCATGGACCAAGGATGCCATCAAAACGTCAAGAGGAACTCATGCTTGTATGCGATATATACTTTGCAATTGAGATAGTCATTGTATATGTGTCTATGTGTGTCCATGTGTTTTATAAGTAAGCATGCAGTTCAATGCTTGAGATATTAATAATCGACATGGGTCATCTGCTATCCCAGCCATTTAAAAGATCTTTGGTTTCATGATATCAAATGCATAGCGCCTAATCATTTAATAGAGTTCCATCTTGGTAGAAATGTATCATTTAAGATTTTCATGATGCTATAGGATTAAATTTATCAATTATCATCAATTGTAGTAATCAGCAATCAGCATGTTTTCATATTCTTCTATCAGTAGTTTGAGACATGAAAAAGGTCCTGAATATTCATTATTCATTAGTATGCTGTTGGAATTGGCCATTTGAAAACGCTTTTTAGTTATGTAATCCCCATTCTTATATCTTTAGTAACTCTGTAATTGTCAAGTATCAACTTCTGAAATTCTTATTATATCTTTTCCTCGCCTCTGTTTTCTTTGTTGTGTTTTCAGGTTGTCATGAGATACTATGGGCGGAGTGAGATATCTGAAGAGGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGGCGACTTCAGAAGAAAAGGGGTATAGCTTTGAAGCACTCAGCACAGCGTATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGCAGCACTGACACATTGACCGTGGCCAATTCATCCATTGGTATGTGTGGAGTAGTTGACTTTTTGCTGATACATTCATTTTGCAAACAACAAAATGTTATTCATAGAGGGTGGAAAGTAAGTACTTCAAGCGGCCATTCGTTCTAATTTAAGGCTTGATTATGATGCCAATGCAGATGTTAACAATCACATGAACTCAGATAGTGGTAGCGTGTCTGAAACATGTCTGCCTGGTGGAGAGGTCAGCTTTTCTGATAATGGCTCCGCTAGAACTGCTCAACCGAAATTCAATCCAAAATTATCACTCTTGGGACATGGACCACACGGTAAACAAGTTGTGGATCATCTACTGAGGGAATATGGTGAGGATGGCATACGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAACCACAGGTAAACTGAATTACCTAACTTAATTTAATCTCTAAACTTCAAAATGGGAGAGCTCATATGGACGTCTCTTTTATGCTAACGTTTCCTGTCTTATCTAAAGAAACGATTATCATTTCCTACCATGTACATCTATCATTTTACTATTCCAGTCCCAATTACACTTTAAAGATTCCGGGTCTTTGACTTTATTGTTCTCACTATTACATAGTGATCTTCTCATCAAGGTATCATAGCATCGCCATACTTCCTGATGGTCACCTTATTTAAGGAATTATTGGTAAAAGTTCAAAGATTCGTTATCATTGAGTTAACAACTCTTGAAACACAGCATCGATATTCAATATAGAAAGTGGGAATGTAGTTGCAAATCTTCTCTCATACACTGCCTTCATATTTGACGATGATGATAATAAAGATGAAAAAAGAAAACGAAAGTTTTTGAGATTTGATAAAGGAGACGTGGTTTTTATCCTGTTGTTACTTTATCTTTAGGGAAATCAAGTTCATATCATAAGATGCTCTAATTAACCTCGTTTCTTGCCTTGTTTGTCTTGACATCTTGTTTGGTGATAGGTTCCATAGACTTGCTTGCAGATCTATATCTAGGCTAATCATCATTTGAGCTCCTTTGACCATGGAAACCAATGACCATACAATATGAATACGCACAACTCTGGTTTTATTTTTTATAATTGCCAATACTTCAAAACATCTCTAGACTGCATCTTTAATAAACATTGATATAAATTTCATCGCACTGTTGACTGAGCATGAGAAGGTGGAGATGATTGTTGTGAATGATTTTTCCTGTTGCTTAATCTCTGAAATTGTGTTGTTATGTTAAGATTGTTATTAGTGGAATGGTCTGATTTATGGACACTGAAATTTTTCAACTTTATTCCAGTGGTAGAAGGGACTTTGGCGAATTCAGTGTGTACAATCCTATAAAGAAGCCTTCCCCTGCTATTGAGTAGAACAATTCGAAGCACTGCAACAATGCCCATGTTGCATGTAAGGCCATATCATTCCATGCTAGGAATTAGCAGATTATATTCCGCTTCATTTCCACAAGTAAAATCTCTCAATTTCAATGTCACACGTTTTGTTTTTAATTTCTCTGCGCTGAGGAAGTTAAACTATTCAATTTTGTGCAGATATCTTTTGTATATTAAGATTAGGATGGCGGCCTTGTCTTTGTCCCCATCTTGTGAGCCTTTCATCTCTCTTGTACCTTATTGACTTCATACTTGGCTTAGGATCTTTTTGACTAAGTATTCTTAAATTGTTTAACATAGCTTAGGGGATATAATTTGCAATGGAAAGAAATTGCAGTAGAGCTTTAGCTACAATTTAAATGGAATTCAGTACTGAAGTCACTTCCAGGTAAACTATCGGCCTCTTGTTTTTCAATTATGTGGTTAAAATGAGATGAATAGTCAAAATGGTCTCTAATCTTTTAAATATTTTTTAACTTGCTCTTTATAACCTATTGAGAATTAAAAATCGTCAATTAAGTCATTCCATACACAAATATGTCAAAATTTATTAACATAAAAATGTATAATCAAATTATTTTTAGGGCAGGTAGGATTTTGTGTGTCCAATAGTATTTGAGTGGTATGTTCACACATTCAAATATGTTAATAAAAATAATAATTCAATGATAAATTAAGGATCAAGAATAAAAACTATTTAGAAACTTTTATTTCTGTTCTAAGCAAATGCAGAGTGTTATCTGTCATATTGGATAATACACGACGTTTAACCTTGTGTATTTGTTAATCTTCACTTTACAAAAACATCTTAACCATGTGAAAAAGCAAAAAACATATATTTAGAAATTGCCTTTTCTACGTACAAATTTTAGTTACGATTCTAAATATACTTTGAAAAGTAGATTAGATTACAAAGAACTCATTGGTAAGCGTATTCAACTTTTAAAAATTAAAAAAAAAAAAAAAAAAATCTGTATCTAACGTGGATCTTATACCTAATCAATCAACATCGTGTAAATTGGTAAATATCAAAAAGCTTGACATTAAGAAAGCTTTGTTAAGACAATATTTTCTTGGAAAATAACATTCTAACAAACTTATGTGTTTATGGTGGAATTTACTTTAATCTTCTAATAACAATTGCAGGGCTTAGCAATACTTGTTGAATTTCAATTTGTAGGAGCAACAGCTTAACAATCATCAGGTAAAGTATCTCTGCCAATCATGTGTTGT

mRNA sequence

GGAAAGAAACGATTTGTCGTCCAATTGCGGATAAATATAATATAAGAAAATTCACCTCTCTGACGTGGGCAACACGTTGACATCAGTGAGTTTCAATACGACACCGTTCTGGGACGGCGTAAACATCCTGTCCGGAGTCGAAACCGTCGCCGCCGTATGAGAAATCGAAGCTCCAAATCAGAGAAACACAGGCAAAAGAACGAAAACGGAGGCCATTGATTCGGATGGAGCTTCAACACAAGGTCAAAATCGCTCTAGTCGTAGCGTCTTTTGCAGCTCTAACAATCTTATTTACAGCCAGACGCCGCCGGAAGCAAAGGAGAGTTCGTAGTTCGTGTTATTTACGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAGCACTTTAAGCTCAATATGAATACAGACAACGATGTAAACGCTCATCCCTACGAGTCAGAAATACTATCATTGTTGGAAAATTCTTTGCCTGAATTTGATTTTATTAGTGAAAGAAAAGATTTTACTTTGAGTGACGCTTATGTTTGGGTTGAGAACGAGTCCCAATTGGAAGAACTCGTGGATGTGTTAAATAAAGAAACGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCAATGAATCTTCTTCGTCCTGTCTTTGCCAATAGTCGTATTTGCAAGGTGTTTCACGGTGCTGATAATGACATTCTCTGGCTTCAAAGGGACTTCCATATATATGTAGTCAATTTATTTGACACTGCAAAGGCTTGCGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTTGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTACAGCGAGAAGACTGGAGACAACGACCCCTATCAGCAGATATGGTGCAGTATGCTAGGACAGATGCCCACTATCTCCTATATATTGCAAACTGTTTGCTTTCTGAGCTGAAACAGGTTGATGAAAACTCTTCCACCGATGATAAATTCAATTTTCTTCTCGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTCTATGCAAAAGAGACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCTCGTAACTTAAACAGTCAATTAGTTTCCTGTAAAACTCAGTTTCAGGATCATGTGAGGAGAATATGTGCTTGGCGAGACTTAATGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTGTAGCTCTTGCAACTCAAGTGTCAAAAAATACGATGGGATTATATGCAACTATCGCACAAGCTGATTTGAATGTGGATTTGAGTCCGAGTTTGCTTCTTCCATCTCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTCCTCCGTGACAAGTCTGGCGACCTTGATAATATTTTTTTGGGGATCTTACAGAACTGCATCGGTTCTAATGGCAGTTGCCCCCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGGCAATATCTAAACAAAATTATAGAAAGAATGCAAAGCAAATATCCAAAAAAGCTTCAAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGACGCTTGCTGTGCTACTGTGATCGGCGAAAACTTGAATGGTACTTGCGCCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGCTTCTTTTTGAACCTAAAGGTCGTCCAGAGGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCATTATTTACGTTATCGAATAATCCCCTCATGCTACAGAATACACTTTCCTGAGCATTTAAAAAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGTCATGAAGTTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGATCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACTAAGGAGGCCTTTGATTTAGTTGAGACGTCTGACTCCGGAACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTATTGCGGCATGGACCAAGGATGCCATCAAAACGTCAAGAGGAACTCATGCTTGTTGTCATGAGATACTATGGGCGGAGTGAGATATCTGAAGAGGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGGCGACTTCAGAAGAAAAGGGGTATAGCTTTGAAGCACTCAGCACAGCGTATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGCAGCACTGACACATTGACCGTGGCCAATTCATCCATTGATGTTAACAATCACATGAACTCAGATAGTGGTAGCGTGTCTGAAACATGTCTGCCTGGTGGAGAGGTCAGCTTTTCTGATAATGGCTCCGCTAGAACTGCTCAACCGAAATTCAATCCAAAATTATCACTCTTGGGACATGGACCACACGGTAAACAAGTTGTGGATCATCTACTGAGGGAATATGGTGAGGATGGCATACGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAACCACAGTGGTAGAAGGGACTTTGGCGAATTCAGTGTGTACAATCCTATAAAGAAGCCTTCCCCTGCTATTGAGTAGAACAATTCGAAGCACTGCAACAATGCCCATGTTGCATATATCTTTTGTATATTAAGATTAGGATGGCGGCCTTGTCTTTGTCCCCATCTTCTTAGGGGATATAATTTGCAATGGAAAGAAATTGCAGTAGAGCTTTAGCTACAATTTAAATGGAATTCAGTACTGAAGTCACTTCCAGGGCTTAGCAATACTTGTTGAATTTCAATTTGTAGGAGCAACAGCTTAACAATCATCAGGTAAAGTATCTCTGCCAATCATGTGTTGT

Coding sequence (CDS)

ATGGAGCTTCAACACAAGGTCAAAATCGCTCTAGTCGTAGCGTCTTTTGCAGCTCTAACAATCTTATTTACAGCCAGACGCCGCCGGAAGCAAAGGAGAGTTCGTAGTTCGTGTTATTTACGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAGCACTTTAAGCTCAATATGAATACAGACAACGATGTAAACGCTCATCCCTACGAGTCAGAAATACTATCATTGTTGGAAAATTCTTTGCCTGAATTTGATTTTATTAGTGAAAGAAAAGATTTTACTTTGAGTGACGCTTATGTTTGGGTTGAGAACGAGTCCCAATTGGAAGAACTCGTGGATGTGTTAAATAAAGAAACGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCAATGAATCTTCTTCGTCCTGTCTTTGCCAATAGTCGTATTTGCAAGGTGTTTCACGGTGCTGATAATGACATTCTCTGGCTTCAAAGGGACTTCCATATATATGTAGTCAATTTATTTGACACTGCAAAGGCTTGCGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTTGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTACAGCGAGAAGACTGGAGACAACGACCCCTATCAGCAGATATGGTGCAGTATGCTAGGACAGATGCCCACTATCTCCTATATATTGCAAACTGTTTGCTTTCTGAGCTGAAACAGGTTGATGAAAACTCTTCCACCGATGATAAATTCAATTTTCTTCTCGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTCTATGCAAAAGAGACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCTCGTAACTTAAACAGTCAATTAGTTTCCTGTAAAACTCAGTTTCAGGATCATGTGAGGAGAATATGTGCTTGGCGAGACTTAATGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTGTAGCTCTTGCAACTCAAGTGTCAAAAAATACGATGGGATTATATGCAACTATCGCACAAGCTGATTTGAATGTGGATTTGAGTCCGAGTTTGCTTCTTCCATCTCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTCCTCCGTGACAAGTCTGGCGACCTTGATAATATTTTTTTGGGGATCTTACAGAACTGCATCGGTTCTAATGGCAGTTGCCCCCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGGCAATATCTAAACAAAATTATAGAAAGAATGCAAAGCAAATATCCAAAAAAGCTTCAAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGACGCTTGCTGTGCTACTGTGATCGGCGAAAACTTGAATGGTACTTGCGCCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGCTTCTTTTTGAACCTAAAGGTCGTCCAGAGGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCATTATTTACGTTATCGAATAATCCCCTCATGCTACAGAATACACTTTCCTGAGCATTTAAAAAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGTCATGAAGTTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGATCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACTAAGGAGGCCTTTGATTTAGTTGAGACGTCTGACTCCGGAACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTATTGCGGCATGGACCAAGGATGCCATCAAAACGTCAAGAGGAACTCATGCTTGTTGTCATGAGATACTATGGGCGGAGTGAGATATCTGAAGAGGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGGCGACTTCAGAAGAAAAGGGGTATAGCTTTGAAGCACTCAGCACAGCGTATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGCAGCACTGACACATTGACCGTGGCCAATTCATCCATTGATGTTAACAATCACATGAACTCAGATAGTGGTAGCGTGTCTGAAACATGTCTGCCTGGTGGAGAGGTCAGCTTTTCTGATAATGGCTCCGCTAGAACTGCTCAACCGAAATTCAATCCAAAATTATCACTCTTGGGACATGGACCACACGGTAAACAAGTTGTGGATCATCTACTGAGGGAATATGGTGAGGATGGCATACGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAACCACAGTGGTAGAAGGGACTTTGGCGAATTCAGTGTGTACAATCCTATAAAGAAGCCTTCCCCTGCTATTGAGTAG

Protein sequence

MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYSAFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYVWVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERRRLQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSIDVNNHMNSDSGSVSETCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE
Homology
[Close]
BLAST of Lcy08g004960 vs. ExPASy Swiss-Prot
Match: A9LLI8 (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 1109.4 bits (2868), Expect = 0.0e+00
Identity = 571/899 (63.52%), Postives = 696/899 (77.42%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILF-TARRRRKQRRVR----SSCYLRDDQKPQYAFKRVLA 60
           MEL+ K K+ + VAS  A+TILF T  RRR+QRR +    SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHFKL----NMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYV 120
           DNSYS FKH KL    + + +   N HPYE+EI  LLEN   EF F+       +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 121 WVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM 180
           WVE ESQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD M
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 181 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 240
           ++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET
Sbjct: 181 SILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLET 240

Query: 241 YCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV--DENSSTDDK 300
            CGVATNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L +ELKQ+  +++SS DD+
Sbjct: 241 VCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDDR 300

Query: 301 FNFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLN--SQLVSCKTQFQDHVRRI 360
           F+FLLEASRRSNM CLQLY KETE  PG +A+SSI  R+LN      +     ++ VR++
Sbjct: 301 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKL 360

Query: 361 CAWRDLMARVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSL--LLP 420
           CAWRDLM R+HDES RYVLSDQAIV L+ +    T  +Y TIA  DL  + SPSL   + 
Sbjct: 361 CAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQ 420

Query: 421 SPSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM 480
           SP PV+CSHLDD++ ++ DK   LD++   +L+ C+G+NG+CP+S+FNY+LLV +  K+ 
Sbjct: 421 SPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKLS 480

Query: 481 AIS--KQNYRKNAK-QISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW 540
           + S  KQN  KN K Q ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLEW
Sbjct: 481 SHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEW 540

Query: 541 YLRRELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPS 600
           YL R LA+LV+++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRIIPS
Sbjct: 541 YLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPS 600

Query: 601 CYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEA- 660
           CYR+HFPEHLKSHRSHDIVLLCVDCHEVAHAAAE++K+ +A EFGIPLFVRRV+D+KEA 
Sbjct: 601 CYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQ 660

Query: 661 --FDLVETSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEI 720
               LVE   +G + ++ GVSPL LR+AAMALLRHG RMPS R+EEL+  V  YYG  ++
Sbjct: 661 GTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDL 720

Query: 721 SEEDLEKALLVGMSPHERRRLQKKRGIALKHSAQRIFPDA---EHQNGACSTD---TLTV 780
           SEEDLEKALL+G+SPHERR+L++K+G++ KHSA+    D    E+ +G    D    +TV
Sbjct: 721 SEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEALADFEKIMTV 780

Query: 781 ANSSIDVNNHMNSDSGSVSETCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVV 840
             S++        DSG    T    G    +D         + N KLSLLGHGPHGKQ+V
Sbjct: 781 ERSTV------VDDSG--DGTSEGDGAKELNDTQCNGNTLHQQNSKLSLLGHGPHGKQIV 840

Query: 841 DHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPS 873
           ++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFSVYNP K+ S
Sbjct: 841 EYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYNPTKRLS 890

[Close]
BLAST of Lcy08g004960 vs. ExPASy Swiss-Prot
Match: Q0WVE8 (Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-53
Identity = 133/337 (39.47%), Postives = 184/337 (54.60%), Query Frame = 0 

Query: 45  KPQYAFKRVLADNSYSAFKHFKLNMNTDNDVNAHPYES-EILSLLENSLPEFDFISERKD 104
           KPQ  +K +L DN+ + F+H  L  + D     HP E   ++  ++ +L E   +   K 
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPV---KP 111

Query: 105 FTLSDA-YVWVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLV 164
             L +  +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+V
Sbjct: 112 LPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIV 171

Query: 165 DTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP 224
           D   L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL   
Sbjct: 172 DIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLE 231

Query: 225 QKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVD 284
           + SL +LL+ YCGVA NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  + 
Sbjct: 232 RNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMA 291

Query: 285 ENSSTDDKFNFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQ 344
           +     D  + L+E  +RS  +C+QLY KE            + + NLN+  +S      
Sbjct: 292 KEDEQSD--SPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI----- 351

Query: 345 DHVRRICAWRDLMARVHDESLRYVLSDQAIVALATQV 379
             V  +C WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 --VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]
BLAST of Lcy08g004960 vs. ExPASy Swiss-Prot
Match: A9LLI7 (Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-51
Identity = 131/372 (35.22%), Postives = 198/372 (53.23%), Query Frame = 0 

Query: 10  ALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYSAFKHFKLNM 69
           A V    + + +    R +    + +   ++   +KPQ  +  +L +N+   F+H  L  
Sbjct: 162 AAVNGGGSVIDVKMAERDKNSSGKAKVPFHVPTIKKPQEEY-NILVNNANLPFEHVWLER 221

Query: 70  NTDNDVNAHPYES-EILSLLENSLPEFDFISERKDFTLSDA-YVWVENESQLEELVDVLN 129
           + D+    HP E   +L  ++  + E + +   K   L    + +V+    L+ELV  L 
Sbjct: 222 SEDDLRAMHPLEKFSVLDFVDKDVNEMEPV---KPLPLEQTPFKFVQEVKDLKELVAKLR 281

Query: 130 KETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMN-LLRPVFANSRICKV 189
               FAVD E +  RSF G T L+QIST  EDY+VDT  L   +   LR +F + +  KV
Sbjct: 282 SVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKV 341

Query: 190 FHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDW 249
            HGAD DI+WLQRDF IYV NLFDT +A  VL+  + SL +LL+ +CGV  NK  Q  DW
Sbjct: 342 MHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADW 401

Query: 250 RQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRRSNMICLQ 309
           R RPL  +M +YAR D HYLLYI + +  EL+++ ++ +  D  + LLE  +RS  +C Q
Sbjct: 402 RIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD--SPLLEVYKRSYDVCTQ 461

Query: 310 LYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHDESLRYVL 369
           LY KE            + +   N+  ++        V  +C WRD +AR  DES  YVL
Sbjct: 462 LYEKELLTENSYLHVYGLQAAGFNAAQLAI-------VAGLCEWRDFIARAEDESTGYVL 520

Query: 370 SDQAIVALATQV 379
            ++ ++ +A ++
Sbjct: 522 PNKVLLEIAKEM 520

[Close]
BLAST of Lcy08g004960 vs. ExPASy Swiss-Prot
Match: P56960 (Exosome component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-48
Identity = 135/373 (36.19%), Postives = 194/373 (52.01%), Query Frame = 0 

Query: 62  FKHFKLNMNTDNDVNAHPYESEI------LSLLENSLPE-FDFISERKDFTLSDAYVWVE 121
           F H +     + D+ AHPY+ E+       S+L+   P+ +  + E     +        
Sbjct: 240 FIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLV-------- 299

Query: 122 NESQLEELVDVLNKETV----FAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 181
             S L+ELV+ LN++ +    FAVD E HS RSFLG T L+QIST  ED++VDT+ L   
Sbjct: 300 --SSLDELVE-LNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSD 359

Query: 182 MNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 241
           M +L     +  I KVFHGAD+DI WLQ+DF +YVVN+FDT +A  +L+  + SL +LL 
Sbjct: 360 MYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLR 419

Query: 242 TYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKF 301
            YCGV +NK  Q  DWR RPL  +M+ YAR D HYLLYI + +  EL +   +       
Sbjct: 420 LYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQ--- 479

Query: 302 NFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAW 361
             L    +RS  ICL+ + K                ++LNSQ +   T FQ     + AW
Sbjct: 480 --LQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQL---TAFQ----LLFAW 539

Query: 362 RDLMARVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPV 421
           RD  AR  DES  YVL +  ++ +A ++ K   G+ A                 P P P+
Sbjct: 540 RDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCN--------------PVP-PL 574

Query: 422 VCSHLDDLHCLLR 424
           V   ++++H L++
Sbjct: 600 VRQQINEMHLLIQ 574

[Close]
BLAST of Lcy08g004960 vs. ExPASy Swiss-Prot
Match: Q10146 (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 5.0e-48
Identity = 126/317 (39.75%), Postives = 176/317 (55.52%), Query Frame = 0 

Query: 66  KLNMNTDNDVNAHPYESEILSLLENSL--PEFDFISERKDFTLSDAY--VWVENESQLEE 125
           KL+ +  N +  HPYE EI    +NS+  P    +S   D    D    +WV  ESQL +
Sbjct: 175 KLDPSLKNSL-PHPYEPEI----QNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSD 234

Query: 126 LVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFANS 185
           ++  L      AVD E H  RSF GF  L+QIS  ++D++VDT+ L + +  L  VF N 
Sbjct: 235 MLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNP 294

Query: 186 RICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKML 245
            I KVFHGA  DI+WLQRDF +YVVNLFDT  A +VL      LA+LL+ YC    +K  
Sbjct: 295 NIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRY 354

Query: 246 QREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRRSN 305
           Q  DWR RPL  +M++YA++D HYLLYI + L +EL     + S + K N +      S 
Sbjct: 355 QMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNEL----ISKSAERKENLMQSVFNSSK 414

Query: 306 MICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHV---RRICAWRDLMARVH 365
            I L+ Y  E E         +   RN+ ++  S K   ++ +   R +  WRD +AR  
Sbjct: 415 QISLRKY--ELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKE 474

Query: 366 DESLRYVLSDQAIVALA 376
           DES+RYVL ++ ++A+A
Sbjct: 475 DESVRYVLPNRLLIAIA 480

[Close]
BLAST of Lcy08g004960 vs. ExPASy TrEMBL
Match: A0A6J1C5X3 (protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE=4 SV=1)

HSP 1 Score: 1621.3 bits (4197), Expect = 0.0e+00
Identity = 804/881 (91.26%), Postives = 836/881 (94.89%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLR-DDQKPQYAFKRVLADNSY 60
           MEL+HKVKI L VASFAALTILFTARRRRKQ+ VRSSCYLR DDQK QY FKRVLADNSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 61  SAFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYVWVENESQL 120
           S FKH KLNMNTDNDVN+HPYESEILSLLENS PE+DF+SERKDFT SDAYVWVE ESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTAL+QIST KEDYLVD IALHDSMNLLRP+FA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTRKEDYLVDAIALHDSMNLLRPIFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLLSELKQV+ENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQ----LVSCKTQFQDHVRRICAWRDLMA 360
           SNMICLQLYAKETEGSPGESAASSISSR LNSQ    ++SCKTQFQD VRR+CAWRDLMA
Sbjct: 301 SNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHL 420
           RVHDESLRYVLSDQAIVALA +V KNTM LYATIAQADL+VDLSPSL LPSPSPVVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSHL 420

Query: 421 DDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKN 480
           DDLHCLL DKSGDLDNIFL ILQNCIGS+GSCPLSIFNYALLVKYNLKMM ISK N+RKN
Sbjct: 421 DDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDD 540
           AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWY+RRELAELVDDD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVRRELAELVDDD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQ 660
           RSHDIVLLCVDCHE+AHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAF+L E SDSGTNFQ
Sbjct: 601 RSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAEPSDSGTNFQ 660

Query: 661 EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPH 720
           EEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGR EISEEDLE+ALLVGMSPH
Sbjct: 661 EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLERALLVGMSPH 720

Query: 721 ERRRLQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSIDVNNHMNSDSGSVSETC 780
           ERRRLQKKRGIALKHSAQ  FP+AEHQNGAC  DT T  NSS+D+N+H NSDSGSVS+ C
Sbjct: 721 ERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNSDSGSVSDKC 780

Query: 781 LPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQV 840
           LPGG+V FSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGE+GIRQFCQRWRQV
Sbjct: 781 LPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIRQFCQRWRQV 840

Query: 841 FVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           FVAA +PRFLPAGWDVNHSGRRDFGEFSVYNPIKK SP+ E
Sbjct: 841 FVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]
BLAST of Lcy08g004960 vs. ExPASy TrEMBL
Match: A0A6J1EWH5 (protein RRP6-like 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=4 SV=1)

HSP 1 Score: 1605.5 bits (4156), Expect = 0.0e+00
Identity = 808/883 (91.51%), Postives = 829/883 (93.88%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN+HPYESEILSLLENS  EFDFI SER DFTLSD YVWVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWR RPLS DMV+YARTDAHYLL+IANCLLSELKQV+ENSSTD KFNFLLEASRR
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTDGKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHD 360
           SNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVHD
Sbjct: 301 SNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVHD 360

Query: 361 ESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDLH 420
           ESLRYVLSDQAI+ALATQ+SKNT  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDLH
Sbjct: 361 ESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDLH 420

Query: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQI 480
           CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK++
Sbjct: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKKM 480

Query: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540
           SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI
Sbjct: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540

Query: 541 KLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600
           K+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD
Sbjct: 541 KILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600

Query: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEGV 660
           IVLLCVDCHEVAHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEGV
Sbjct: 601 IVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEGV 660

Query: 661 SPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERRR 720
           SPLELRTAAMALLRHGPRMP KRQEELM VVMRYYGR EISEEDLEKALLVGMSPHERRR
Sbjct: 661 SPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERRR 720

Query: 721 LQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI------DVNNHMNSDSGSVSE 780
           LQKK+GIALKHS Q IFPDAEHQNGACS D+ TV NSSI      DVNNHMNSD+G+V E
Sbjct: 721 LQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADADVNNHMNSDNGTVPE 780

Query: 781 TCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWR 840
           TCLP GEV  SDNGSA TAQPKFN KLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWR
Sbjct: 781 TCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWR 840

Query: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYN IKK SP IE
Sbjct: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883

[Close]
BLAST of Lcy08g004960 vs. ExPASy TrEMBL
Match: A0A6J1JM94 (protein RRP6-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 SV=1)

HSP 1 Score: 1604.7 bits (4154), Expect = 0.0e+00
Identity = 806/883 (91.28%), Postives = 830/883 (94.00%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELQ K KIALVVASFAALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN+HPYESEILSLLENS  EFDFI SER DFTLSD YVWVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLS DMV+YARTDAHYLL+IANCLLSELKQV+ENSSTD KFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTDGKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHD 360
           SNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVHD
Sbjct: 301 SNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVHD 360

Query: 361 ESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDLH 420
           ESLRYVLSDQAI ALATQ+SKN+  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDLH
Sbjct: 361 ESLRYVLSDQAIAALATQMSKNSWELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDLH 420

Query: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQI 480
           CLLRDKSGD D+IFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK++
Sbjct: 421 CLLRDKSGDPDSIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKKM 480

Query: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540
           SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI
Sbjct: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540

Query: 541 KLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600
           K+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD
Sbjct: 541 KILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600

Query: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEGV 660
           IVLLCVDCHEVAHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEGV
Sbjct: 601 IVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEGV 660

Query: 661 SPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERRR 720
           SPLELRTAAMALLRHGPRMP KRQEELM VVMRYYGR EISEEDLEKALLVGMSPHERRR
Sbjct: 661 SPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERRR 720

Query: 721 LQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI------DVNNHMNSDSGSVSE 780
           LQKK+GIALKHS Q IFPDAEHQNGACS D+ T+ NSSI      DVNNHMNSD+G+V E
Sbjct: 721 LQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTMTNSSIDADADADVNNHMNSDNGTVPE 780

Query: 781 TCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWR 840
           TCLP GEV   +NGSA TAQPKFNPKLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWR
Sbjct: 781 TCLPCGEVKVPENGSAITAQPKFNPKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWR 840

Query: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYN IKK SPAIE
Sbjct: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPAIE 883

[Close]
BLAST of Lcy08g004960 vs. ExPASy TrEMBL
Match: A0A6J1ESK7 (protein RRP6-like 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=4 SV=1)

HSP 1 Score: 1601.6 bits (4146), Expect = 0.0e+00
Identity = 808/882 (91.61%), Postives = 829/882 (93.99%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN+HPYESEILSLLENS  EFDFI SER DFTLSD YVWVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVD-ENSSTDDKFNFLLEASR 300
           MLQREDWR RPLS DMV+YARTDAHYLL+IANCLLSELKQV+ ENSSTD KFNFLLEASR
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300

Query: 301 RSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVH 360
           RSNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVH
Sbjct: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360

Query: 361 DESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDL 420
           DESLRYVLSDQAI+ALATQ+SKNT  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDL
Sbjct: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420

Query: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQ 480
           HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK+
Sbjct: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480

Query: 481 ISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540
           +SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA
Sbjct: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540

Query: 541 IKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600
           IK+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH
Sbjct: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600

Query: 601 DIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEG 660
           DIVLLCVDCHEVAHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEG
Sbjct: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660

Query: 661 VSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERR 720
           VSPLELRTAAMALLRHGPRMP KRQEELM VVMRYYGR EISEEDLEKALLVGMSPHERR
Sbjct: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720

Query: 721 RLQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI----DVNNHMNSDSGSVSET 780
           RLQKK+GIALKHS Q IFPDAEHQNGACS D+ TV NSSI    DVNNHMNSD+G+V ET
Sbjct: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNGTVPET 780

Query: 781 CLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQ 840
           CLP GEV  SDNGSA TAQPKFN KLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWRQ
Sbjct: 781 CLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYN IKK SP IE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 882

[Close]
BLAST of Lcy08g004960 vs. ExPASy TrEMBL
Match: A0A6J1JK94 (protein RRP6-like 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 SV=1)

HSP 1 Score: 1600.9 bits (4144), Expect = 0.0e+00
Identity = 806/882 (91.38%), Postives = 830/882 (94.10%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELQ K KIALVVASFAALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN+HPYESEILSLLENS  EFDFI SER DFTLSD YVWVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVD-ENSSTDDKFNFLLEASR 300
           MLQREDWRQRPLS DMV+YARTDAHYLL+IANCLLSELKQV+ ENSSTD KFNFLLEASR
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300

Query: 301 RSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVH 360
           RSNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVH
Sbjct: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360

Query: 361 DESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDL 420
           DESLRYVLSDQAI ALATQ+SKN+  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDL
Sbjct: 361 DESLRYVLSDQAIAALATQMSKNSWELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420

Query: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQ 480
           HCLLRDKSGD D+IFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK+
Sbjct: 421 HCLLRDKSGDPDSIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480

Query: 481 ISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540
           +SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA
Sbjct: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540

Query: 541 IKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600
           IK+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH
Sbjct: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600

Query: 601 DIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEG 660
           DIVLLCVDCHEVAHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEG
Sbjct: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660

Query: 661 VSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERR 720
           VSPLELRTAAMALLRHGPRMP KRQEELM VVMRYYGR EISEEDLEKALLVGMSPHERR
Sbjct: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720

Query: 721 RLQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI----DVNNHMNSDSGSVSET 780
           RLQKK+GIALKHS Q IFPDAEHQNGACS D+ T+ NSSI    DVNNHMNSD+G+V ET
Sbjct: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTMTNSSIDADADVNNHMNSDNGTVPET 780

Query: 781 CLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQ 840
           CLP GEV   +NGSA TAQPKFNPKLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWRQ
Sbjct: 781 CLPCGEVKVPENGSAITAQPKFNPKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYN IKK SPAIE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPAIE 882

[Close]
BLAST of Lcy08g004960 vs. NCBI nr
Match: XP_022135803.1 (protein RRP6-like 3 isoform X1 [Momordica charantia])

HSP 1 Score: 1621.3 bits (4197), Expect = 0.0e+00
Identity = 804/881 (91.26%), Postives = 836/881 (94.89%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLR-DDQKPQYAFKRVLADNSY 60
           MEL+HKVKI L VASFAALTILFTARRRRKQ+ VRSSCYLR DDQK QY FKRVLADNSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 61  SAFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYVWVENESQL 120
           S FKH KLNMNTDNDVN+HPYESEILSLLENS PE+DF+SERKDFT SDAYVWVE ESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTAL+QIST KEDYLVD IALHDSMNLLRP+FA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTRKEDYLVDAIALHDSMNLLRPIFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLLSELKQV+ENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQ----LVSCKTQFQDHVRRICAWRDLMA 360
           SNMICLQLYAKETEGSPGESAASSISSR LNSQ    ++SCKTQFQD VRR+CAWRDLMA
Sbjct: 301 SNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHL 420
           RVHDESLRYVLSDQAIVALA +V KNTM LYATIAQADL+VDLSPSL LPSPSPVVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSHL 420

Query: 421 DDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKN 480
           DDLHCLL DKSGDLDNIFL ILQNCIGS+GSCPLSIFNYALLVKYNLKMM ISK N+RKN
Sbjct: 421 DDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDD 540
           AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWY+RRELAELVDDD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVRRELAELVDDD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQ 660
           RSHDIVLLCVDCHE+AHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAF+L E SDSGTNFQ
Sbjct: 601 RSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAEPSDSGTNFQ 660

Query: 661 EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPH 720
           EEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGR EISEEDLE+ALLVGMSPH
Sbjct: 661 EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLERALLVGMSPH 720

Query: 721 ERRRLQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSIDVNNHMNSDSGSVSETC 780
           ERRRLQKKRGIALKHSAQ  FP+AEHQNGAC  DT T  NSS+D+N+H NSDSGSVS+ C
Sbjct: 721 ERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNSDSGSVSDKC 780

Query: 781 LPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQV 840
           LPGG+V FSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGE+GIRQFCQRWRQV
Sbjct: 781 LPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIRQFCQRWRQV 840

Query: 841 FVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           FVAA +PRFLPAGWDVNHSGRRDFGEFSVYNPIKK SP+ E
Sbjct: 841 FVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]
BLAST of Lcy08g004960 vs. NCBI nr
Match: XP_038887745.1 (protein RRP6-like 3 [Benincasa hispida] >XP_038887746.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887747.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887748.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887749.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887750.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887751.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887752.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887753.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887754.1 protein RRP6-like 3 [Benincasa hispida])

HSP 1 Score: 1610.5 bits (4169), Expect = 0.0e+00
Identity = 800/880 (90.91%), Postives = 833/880 (94.66%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELQHK+KIALVVASFAALTILFTA RRRK+R VR+SCYLRDDQKPQYAFK VLADNSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTAGRRRKRRSVRTSCYLRDDQKPQYAFKCVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYVWVENESQLE 120
            FKH KLN N D DVN+HPYESEILSLLENS PEFDFISER D TLSD YVWVE ESQLE
Sbjct: 61  QFKHLKLNPNKDLDVNSHPYESEILSLLENSKPEFDFISERTDLTLSDTYVWVETESQLE 120

Query: 121 ELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFAN 180
           EL+DVLNKETVFAVDTEQHSLRSFLGFTAL+QIST KEDYLVDTIALHDSM+LLRP+FAN
Sbjct: 121 ELLDVLNKETVFAVDTEQHSLRSFLGFTALIQISTPKEDYLVDTIALHDSMSLLRPIFAN 180

Query: 181 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKM 240
           SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKM
Sbjct: 181 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKM 240

Query: 241 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRRS 300
           LQREDWRQRPL ADMVQYARTDAHYLLYIANCLLSELKQV+EN+STDDKFNFLLEASRRS
Sbjct: 241 LQREDWRQRPLPADMVQYARTDAHYLLYIANCLLSELKQVNENTSTDDKFNFLLEASRRS 300

Query: 301 NMICLQLYAKETEGSPGESAASSISSRNLNSQ----LVSCKTQFQDHVRRICAWRDLMAR 360
           NM CLQLY+KETEGSPGESAASSISSR+LNSQ    LVSCKTQFQDHVRR+CAWRDLMAR
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSMLVSCKTQFQDHVRRLCAWRDLMAR 360

Query: 361 VHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLD 420
           VHDE+LRYVLSDQAIVALA QVSKNT  LYATIAQADLNVDLS SL LPSPSPVVCSHLD
Sbjct: 361 VHDENLRYVLSDQAIVALANQVSKNTGELYATIAQADLNVDLSSSLYLPSPSPVVCSHLD 420

Query: 421 DLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNA 480
           D+HCLL DKSGDLD+IFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISKQ+ RKNA
Sbjct: 421 DIHCLLHDKSGDLDDIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKQSDRKNA 480

Query: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDP 540
           KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAEL+ DDP
Sbjct: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELIADDP 540

Query: 541 PAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHR 600
           PAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHR
Sbjct: 541 PAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHR 600

Query: 601 SHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQE 660
           SHDIVLLCVDCHE AHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAFD+ E SDSGT+ QE
Sbjct: 601 SHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAEPSDSGTDVQE 660

Query: 661 EGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHE 720
           EGVSPLELRTAAMALLRHGPRMPSKRQEELML+VMRYYGR EISEEDLEKALLVGMSPHE
Sbjct: 661 EGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLEKALLVGMSPHE 720

Query: 721 RRRLQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSIDVNNHMNSDSGSVSETCL 780
           +RRLQKK+G+ALKHSAQ +FP AEHQNG C+ DT TV NSS+DV NHMN+DSGSVSETCL
Sbjct: 721 KRRLQKKKGLALKHSAQSVFPAAEHQNGGCNIDTSTVVNSSVDVKNHMNADSGSVSETCL 780

Query: 781 PGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQVF 840
           PGGEVSFSD+G A+T QPKFNPKLSLLGHGPHGK VVDHLLREYGEDGIRQFCQRWRQVF
Sbjct: 781 PGGEVSFSDDGYAKTVQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQVF 840

Query: 841 VAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           VAAIQPRFLPAGWDVNHSG+RDFGEFS+YNPIKK S A E
Sbjct: 841 VAAIQPRFLPAGWDVNHSGKRDFGEFSLYNPIKKASLANE 880

[Close]
BLAST of Lcy08g004960 vs. NCBI nr
Match: XP_023531760.1 (protein RRP6-like 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1609.7 bits (4167), Expect = 0.0e+00
Identity = 806/881 (91.49%), Postives = 833/881 (94.55%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN++PYESEILSLLENS  EFDFI SER DFTLSD Y+WVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSYPYESEILSLLENSSSEFDFISSERNDFTLSDTYIWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLS +MV+YARTDAHYLL+IANCLLSELKQV+ENSSTD KFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSEEMVRYARTDAHYLLHIANCLLSELKQVNENSSTDGKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHD 360
           SNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVHD
Sbjct: 301 SNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVHD 360

Query: 361 ESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDLH 420
           ESLRYVLSDQAIVALATQ+SKNT  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDLH
Sbjct: 361 ESLRYVLSDQAIVALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDLH 420

Query: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQI 480
           CLLR+KSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK++
Sbjct: 421 CLLREKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKKM 480

Query: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540
           SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI
Sbjct: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540

Query: 541 KLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600
           K+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD
Sbjct: 541 KILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600

Query: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEGV 660
           IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEGV
Sbjct: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEGV 660

Query: 661 SPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERRR 720
           SPLELRTAAMALLRHGPRMP KRQEELMLVVMRYYGR EISEEDLEKALLVGMSPHERRR
Sbjct: 661 SPLELRTAAMALLRHGPRMPPKRQEELMLVVMRYYGRREISEEDLEKALLVGMSPHERRR 720

Query: 721 LQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI----DVNNHMNSDSGSVSETC 780
           LQKK+GIALKHS Q IFPDAEHQNGACS D+ T+ NSSI    DVNNH+NSD+G+V ETC
Sbjct: 721 LQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTMTNSSIDADPDVNNHLNSDNGTVPETC 780

Query: 781 LPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWRQV 840
           LP GEV  SDNGSA TAQPKFNPKLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWRQV
Sbjct: 781 LPCGEVKVSDNGSAITAQPKFNPKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQV 840

Query: 841 FVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           FVAAIQPRFLPAGWDVNHSG+RDFGEFSVYN IK+ SP IE
Sbjct: 841 FVAAIQPRFLPAGWDVNHSGKRDFGEFSVYNSIKQLSPTIE 881

[Close]
BLAST of Lcy08g004960 vs. NCBI nr
Match: XP_023531755.1 (protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531756.1 protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531758.1 protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531759.1 protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1609.0 bits (4165), Expect = 0.0e+00
Identity = 806/883 (91.28%), Postives = 833/883 (94.34%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN++PYESEILSLLENS  EFDFI SER DFTLSD Y+WVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSYPYESEILSLLENSSSEFDFISSERNDFTLSDTYIWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLS +MV+YARTDAHYLL+IANCLLSELKQV+ENSSTD KFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSEEMVRYARTDAHYLLHIANCLLSELKQVNENSSTDGKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHD 360
           SNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVHD
Sbjct: 301 SNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVHD 360

Query: 361 ESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDLH 420
           ESLRYVLSDQAIVALATQ+SKNT  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDLH
Sbjct: 361 ESLRYVLSDQAIVALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDLH 420

Query: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQI 480
           CLLR+KSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK++
Sbjct: 421 CLLREKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKKM 480

Query: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540
           SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI
Sbjct: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540

Query: 541 KLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600
           K+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD
Sbjct: 541 KILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600

Query: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEGV 660
           IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEGV
Sbjct: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEGV 660

Query: 661 SPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERRR 720
           SPLELRTAAMALLRHGPRMP KRQEELMLVVMRYYGR EISEEDLEKALLVGMSPHERRR
Sbjct: 661 SPLELRTAAMALLRHGPRMPPKRQEELMLVVMRYYGRREISEEDLEKALLVGMSPHERRR 720

Query: 721 LQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI------DVNNHMNSDSGSVSE 780
           LQKK+GIALKHS Q IFPDAEHQNGACS D+ T+ NSSI      DVNNH+NSD+G+V E
Sbjct: 721 LQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTMTNSSIDADADPDVNNHLNSDNGTVPE 780

Query: 781 TCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWR 840
           TCLP GEV  SDNGSA TAQPKFNPKLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWR
Sbjct: 781 TCLPCGEVKVSDNGSAITAQPKFNPKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWR 840

Query: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           QVFVAAIQPRFLPAGWDVNHSG+RDFGEFSVYN IK+ SP IE
Sbjct: 841 QVFVAAIQPRFLPAGWDVNHSGKRDFGEFSVYNSIKQLSPTIE 883

[Close]
BLAST of Lcy08g004960 vs. NCBI nr
Match: XP_022930823.1 (protein RRP6-like 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 1605.5 bits (4156), Expect = 0.0e+00
Identity = 808/883 (91.51%), Postives = 829/883 (93.88%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRKQR VRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHFKLNMNTDNDVNAHPYESEILSLLENSLPEFDFI-SERKDFTLSDAYVWVENESQL 120
           AFKH KL+MNTDNDVN+HPYESEILSLLENS  EFDFI SER DFTLSD YVWVE  SQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMNLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRR 300
           MLQREDWR RPLS DMV+YARTDAHYLL+IANCLLSELKQV+ENSSTD KFNFLLEASRR
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTDGKFNFLLEASRR 300

Query: 301 SNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHD 360
           SNMICLQLY KETEGSPGESAASSI  R+LNSQL S KTQFQDHVRR+CAWRDLMARVHD
Sbjct: 301 SNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVHD 360

Query: 361 ESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSLLLPSPSPVVCSHLDDLH 420
           ESLRYVLSDQAI+ALATQ+SKNT  LYATIAQADLNVDLSPSLLLP PSPVVCSHLDDLH
Sbjct: 361 ESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDLH 420

Query: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMAISKQNYRKNAKQI 480
           CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM ISK+N R+NAK++
Sbjct: 421 CLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKKM 480

Query: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540
           SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI
Sbjct: 481 SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAI 540

Query: 541 KLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600
           K+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD
Sbjct: 541 KILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHD 600

Query: 601 IVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEAFDLVETSDSGTNFQEEGV 660
           IVLLCVDCHEVAHAAAEKHKR+LAAEFGIPLFVRRVVDTKEAFDLVE+SDS TNFQEEGV
Sbjct: 601 IVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEGV 660

Query: 661 SPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEISEEDLEKALLVGMSPHERRR 720
           SPLELRTAAMALLRHGPRMP KRQEELM VVMRYYGR EISEEDLEKALLVGMSPHERRR
Sbjct: 661 SPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERRR 720

Query: 721 LQKKRGIALKHSAQRIFPDAEHQNGACSTDTLTVANSSI------DVNNHMNSDSGSVSE 780
           LQKK+GIALKHS Q IFPDAEHQNGACS D+ TV NSSI      DVNNHMNSD+G+V E
Sbjct: 721 LQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADADVNNHMNSDNGTVPE 780

Query: 781 TCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEDGIRQFCQRWR 840
           TCLP GEV  SDNGSA TAQPKFN KLSLLGHGPHGKQVVDHLL EYGEDGIRQFCQRWR
Sbjct: 781 TCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWR 840

Query: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPSPAIE 877
           QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYN IKK SP IE
Sbjct: 841 QVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883

[Close]
BLAST of Lcy08g004960 vs. TAIR 10
Match: AT2G32415.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1108.6 bits (2866), Expect = 0.0e+00
Identity = 571/898 (63.59%), Postives = 695/898 (77.39%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILF-TARRRRKQRRVR----SSCYLRDDQKPQYAFKRVLA 60
           MEL+ K K+ + VAS  A+TILF T  RRR+QRR +    SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHFKL----NMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYV 120
           DNSYS FKH KL    + + +   N HPYE+EI  LLEN   EF F+       +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 121 WVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM 180
           WVE ESQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD M
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 181 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 240
           ++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET
Sbjct: 181 SILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLET 240

Query: 241 YCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV-DENSSTDDKF 300
            CGVATNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L +ELKQ+  ++SS DD+F
Sbjct: 241 VCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDRF 300

Query: 301 NFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLN--SQLVSCKTQFQDHVRRIC 360
           +FLLEASRRSNM CLQLY KETE  PG +A+SSI  R+LN      +     ++ VR++C
Sbjct: 301 HFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKLC 360

Query: 361 AWRDLMARVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSL--LLPS 420
           AWRDLM R+HDES RYVLSDQAIV L+ +    T  +Y TIA  DL  + SPSL   + S
Sbjct: 361 AWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQS 420

Query: 421 PSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMA 480
           P PV+CSHLDD++ ++ DK   LD++   +L+ C+G+NG+CP+S+FNY+LLV +  K+ +
Sbjct: 421 PYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKLSS 480

Query: 481 IS--KQNYRKNAK-QISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWY 540
            S  KQN  KN K Q ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLEWY
Sbjct: 481 HSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEWY 540

Query: 541 LRRELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSC 600
           L R LA+LV+++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRIIPSC
Sbjct: 541 LNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPSC 600

Query: 601 YRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEA-- 660
           YR+HFPEHLKSHRSHDIVLLCVDCHEVAHAAAE++K+ +A EFGIPLFVRRV+D+KEA  
Sbjct: 601 YRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQG 660

Query: 661 -FDLVETSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEIS 720
              LVE   +G + ++ GVSPL LR+AAMALLRHG RMPS R+EEL+  V  YYG  ++S
Sbjct: 661 TSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDLS 720

Query: 721 EEDLEKALLVGMSPHERRRLQKKRGIALKHSAQRIFPDA---EHQNGACSTD---TLTVA 780
           EEDLEKALL+G+SPHERR+L++K+G++ KHSA+    D    E+ +G    D    +TV 
Sbjct: 721 EEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEALADFEKIMTVE 780

Query: 781 NSSIDVNNHMNSDSGSVSETCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVD 840
            S++        DSG    T    G    +D         + N KLSLLGHGPHGKQ+V+
Sbjct: 781 RSTV------VDDSG--DGTSEGDGAKELNDTQCNGNTLHQQNSKLSLLGHGPHGKQIVE 840

Query: 841 HLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNPIKKPS 873
           +LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFSVYNP K+ S
Sbjct: 841 YLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYNPTKRLS 889

[Close]
BLAST of Lcy08g004960 vs. TAIR 10
Match: AT2G32415.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1075.1 bits (2779), Expect = 0.0e+00
Identity = 555/879 (63.14%), Postives = 678/879 (77.13%), Query Frame = 0 

Query: 1   MELQHKVKIALVVASFAALTILF-TARRRRKQRRVR----SSCYLRDDQKPQYAFKRVLA 60
           MEL+ K K+ + VAS  A+TILF T  RRR+QRR +    SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHFKL----NMNTDNDVNAHPYESEILSLLENSLPEFDFISERKDFTLSDAYV 120
           DNSYS FKH KL    + + +   N HPYE+EI  LLEN   EF F+       +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 121 WVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSM 180
           WVE ESQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD M
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 181 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 240
           ++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET
Sbjct: 181 SILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLET 240

Query: 241 YCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV-DENSSTDDKF 300
            CGVATNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L +ELKQ+  ++SS DD+F
Sbjct: 241 VCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDRF 300

Query: 301 NFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLN--SQLVSCKTQFQDHVRRIC 360
           +FLLEASRRSNM CLQLY KETE  PG +A+SSI  R+LN      +     ++ VR++C
Sbjct: 301 HFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKLC 360

Query: 361 AWRDLMARVHDESLRYVLSDQAIVALATQVSKNTMGLYATIAQADLNVDLSPSL--LLPS 420
           AWRDLM R+HDES RYVLSDQAIV L+ +    T  +Y TIA  DL  + SPSL   + S
Sbjct: 361 AWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQS 420

Query: 421 PSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMA 480
           P PV+CSHLDD++ ++ DK   LD++   +L+ C+G+NG+CP+S+FNY+LLV +  K+ +
Sbjct: 421 PYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKLSS 480

Query: 481 IS--KQNYRKNAK-QISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWY 540
            S  KQN  KN K Q ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLEWY
Sbjct: 481 HSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEWY 540

Query: 541 LRRELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSC 600
           L R LA+LV+++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRIIPSC
Sbjct: 541 LNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPSC 600

Query: 601 YRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRDLAAEFGIPLFVRRVVDTKEA-- 660
           YR+HFPEHLKSHRSHDIVLLCVDCHEVAHAAAE++K+ +A EFGIPLFVRRV+D+KEA  
Sbjct: 601 YRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQG 660

Query: 661 -FDLVETSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLVVMRYYGRSEIS 720
              LVE   +G + ++ GVSPL LR+AAMALLRHG RMPS R+EEL+  V  YYG  ++S
Sbjct: 661 TSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDLS 720

Query: 721 EEDLEKALLVGMSPHERRRLQKKRGIALKHSAQRIFPDA---EHQNGACSTD---TLTVA 780
           EEDLEKALL+G+SPHERR+L++K+G++ KHSA+    D    E+ +G    D    +TV 
Sbjct: 721 EEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEALADFEKIMTVE 780

Query: 781 NSSIDVNNHMNSDSGSVSETCLPGGEVSFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVD 840
            S++        DSG    T    G    +D         + N KLSLLGHGPHGKQ+V+
Sbjct: 781 RSTV------VDDSG--DGTSEGDGAKELNDTQCNGNTLHQQNSKLSLLGHGPHGKQIVE 840

Query: 841 HLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH 854
           +LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+H
Sbjct: 841 YLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSH 870

[Close]
BLAST of Lcy08g004960 vs. TAIR 10
Match: AT1G54440.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-54
Identity = 133/337 (39.47%), Postives = 184/337 (54.60%), Query Frame = 0 

Query: 45  KPQYAFKRVLADNSYSAFKHFKLNMNTDNDVNAHPYES-EILSLLENSLPEFDFISERKD 104
           KPQ  +K +L DN+ + F+H  L  + D     HP E   ++  ++ +L E   +   K 
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPV---KP 111

Query: 105 FTLSDA-YVWVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLV 164
             L +  +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+V
Sbjct: 112 LPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIV 171

Query: 165 DTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP 224
           D   L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL   
Sbjct: 172 DIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLE 231

Query: 225 QKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVD 284
           + SL +LL+ YCGVA NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  + 
Sbjct: 232 RNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMA 291

Query: 285 ENSSTDDKFNFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQ 344
           +     D  + L+E  +RS  +C+QLY KE            + + NLN+  +S      
Sbjct: 292 KEDEQSD--SPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI----- 351

Query: 345 DHVRRICAWRDLMARVHDESLRYVLSDQAIVALATQV 379
             V  +C WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 --VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]
BLAST of Lcy08g004960 vs. TAIR 10
Match: AT1G54440.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-54
Identity = 133/337 (39.47%), Postives = 184/337 (54.60%), Query Frame = 0 

Query: 45  KPQYAFKRVLADNSYSAFKHFKLNMNTDNDVNAHPYES-EILSLLENSLPEFDFISERKD 104
           KPQ  +K +L DN+ + F+H  L  + D     HP E   ++  ++ +L E   +   K 
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPV---KP 111

Query: 105 FTLSDA-YVWVENESQLEELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLV 164
             L +  +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+V
Sbjct: 112 LPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIV 171

Query: 165 DTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP 224
           D   L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL   
Sbjct: 172 DIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLE 231

Query: 225 QKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVD 284
           + SL +LL+ YCGVA NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  + 
Sbjct: 232 RNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMA 291

Query: 285 ENSSTDDKFNFLLEASRRSNMICLQLYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQ 344
           +     D  + L+E  +RS  +C+QLY KE            + + NLN+  +S      
Sbjct: 292 KEDEQSD--SPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI----- 351

Query: 345 DHVRRICAWRDLMARVHDESLRYVLSDQAIVALATQV 379
             V  +C WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 --VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]
BLAST of Lcy08g004960 vs. TAIR 10
Match: AT5G35910.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 206.1 bits (523), Expect = 1.2e-52
Identity = 131/372 (35.22%), Postives = 198/372 (53.23%), Query Frame = 0 

Query: 10  ALVVASFAALTILFTARRRRKQRRVRSSCYLRDDQKPQYAFKRVLADNSYSAFKHFKLNM 69
           A V    + + +    R +    + +   ++   +KPQ  +  +L +N+   F+H  L  
Sbjct: 162 AAVNGGGSVIDVKMAERDKNSSGKAKVPFHVPTIKKPQEEY-NILVNNANLPFEHVWLER 221

Query: 70  NTDNDVNAHPYES-EILSLLENSLPEFDFISERKDFTLSDA-YVWVENESQLEELVDVLN 129
           + D+    HP E   +L  ++  + E + +   K   L    + +V+    L+ELV  L 
Sbjct: 222 SEDDLRAMHPLEKFSVLDFVDKDVNEMEPV---KPLPLEQTPFKFVQEVKDLKELVAKLR 281

Query: 130 KETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMN-LLRPVFANSRICKV 189
               FAVD E +  RSF G T L+QIST  EDY+VDT  L   +   LR +F + +  KV
Sbjct: 282 SVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKV 341

Query: 190 FHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDW 249
            HGAD DI+WLQRDF IYV NLFDT +A  VL+  + SL +LL+ +CGV  NK  Q  DW
Sbjct: 342 MHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADW 401

Query: 250 RQRPLSADMVQYARTDAHYLLYIANCLLSELKQVDENSSTDDKFNFLLEASRRSNMICLQ 309
           R RPL  +M +YAR D HYLLYI + +  EL+++ ++ +  D  + LLE  +RS  +C Q
Sbjct: 402 RIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD--SPLLEVYKRSYDVCTQ 461

Query: 310 LYAKETEGSPGESAASSISSRNLNSQLVSCKTQFQDHVRRICAWRDLMARVHDESLRYVL 369
           LY KE            + +   N+  ++        V  +C WRD +AR  DES  YVL
Sbjct: 462 LYEKELLTENSYLHVYGLQAAGFNAAQLAI-------VAGLCEWRDFIARAEDESTGYVL 520

Query: 370 SDQAIVALATQV 379
            ++ ++ +A ++
Sbjct: 522 PNKVLLEIAKEM 520

The following BLAST results are available for this feature:
BLAST of Lcy08g004960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A9LLI80.0e+0063.52Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1[more]
Q0WVE82.3e-5339.47Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1[more]
A9LLI71.7e-5135.22Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1[more]
P569602.2e-4836.19Exosome component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2[more]
Q101465.0e-4839.75Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
BLAST of Lcy08g004960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C5X30.0e+0091.26protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE... [more]
A0A6J1EWH50.0e+0091.51protein RRP6-like 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=... [more]
A0A6J1JM940.0e+0091.28protein RRP6-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 ... [more]
A0A6J1ESK70.0e+0091.61protein RRP6-like 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=... [more]
A0A6J1JK940.0e+0091.38protein RRP6-like 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 ... [more]
BLAST of Lcy08g004960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135803.10.0e+0091.26protein RRP6-like 3 isoform X1 [Momordica charantia][more]
XP_038887745.10.0e+0090.91protein RRP6-like 3 [Benincasa hispida] >XP_038887746.1 protein RRP6-like 3 [Ben... [more]
XP_023531760.10.0e+0091.49protein RRP6-like 3 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023531755.10.0e+0091.28protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531756.1 prot... [more]
XP_022930823.10.0e+0091.51protein RRP6-like 3 isoform X1 [Cucurbita moschata][more]
BLAST of Lcy08g004960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G32415.10.0e+0063.59Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [more]
AT2G32415.20.0e+0063.14Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [more]
AT1G54440.11.6e-5439.47Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [more]
AT1G54440.21.6e-5439.47Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [more]
AT5G35910.11.2e-5235.22Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 110..278
e-value: 2.8E-41
score: 153.1
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 110..277
e-value: 1.8E-46
score: 158.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 23..313
e-value: 2.9E-82
score: 278.3
IPR044876HRDC domain superfamilyGENE3D1.10.150.80HRDC domaincoord: 327..432
e-value: 2.6E-19
score: 71.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 782..803
NoneNo IPR availablePANTHERPTHR12124:SF68PROTEIN RRP6-LIKE 3coord: 1..870
IPR045092Exosome complex exonuclease Rrp6-likePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 1..870
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 336..390
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 45..310

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g004960.1Lcy08g004960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0044237 cellular metabolic process
biological_process GO:0071040 nuclear polyadenylation-dependent antisense transcript catabolic process
biological_process GO:0071039 nuclear polyadenylation-dependent CUT catabolic process
biological_process GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process
biological_process GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic process
biological_process GO:0071037 nuclear polyadenylation-dependent snRNA catabolic process
biological_process GO:0071038 nuclear polyadenylation-dependent tRNA catabolic process
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0071044 histone mRNA catabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005737 cytoplasm
molecular_function GO:0000175 3'-5'-exoribonuclease activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding