Lcy08g004820 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g004820
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr08: 6264298 .. 6265032 (-)
RNA-Seq ExpressionLcy08g004820
SyntenyLcy08g004820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAAAGCCTCCTAATATGTTGGCCAATATGGAATTTTCGTAACTCAATATATCACAATCAACAGCAACCCAACATACAATTCCTAGCGCAACAGATTCACAGCAGCTTATCAAATGTGGAGGGACAGGGCAATACTCACAGCAAATTCCGAAGGGACCGTTTTGTAGAGATCCCAATTGGGAAATCTGCTTTGGCAAGACAGTGGGCAGGATCCTCAATCGACGAATGGGTACTGCGTAGTGATGCGTCCTGGTGCGAAAGGAAGAAGATGGGCGGTCTAGGATGGATCTTACGCCGGGGAGACGGGTCGTTGGTGTCAGCAGGATTTCGCAACATCCACCATCAATGGAAAGTGAGCTGGTTTGAAGCCTTGGCAGTCACAGAAGGTCTGAAATCAATTTCTCTTGCTCCCCCCAAGTTGATTATCGAGCTTGACTCTATTCAGGTGGTACATCTGCTTGAGGGGAAGGAAGAAGATAAGACAGAACTCACCTTCTTTGTCGAGGAAGCTCAGCGGTTGTTCTCTGGTTTGGGAGTTCAGCCGATTCGGCATATCCCTAGAAAACAGAACAAAGTAGCCCATTTTTTGGCCCAACAGGCAGTTTCGACTGATTCAGCGGAAAGTTGGGTAAATGATTTTCCTTCTTGGTTATTCTTTATGAATTTAGATGAGATTAGGTGTGAAACTCACGATGGTGGGGGGCCTATCCCACCAATGTCTGCTTTTTAA

mRNA sequence

ATGCAAAAAAGCCTCCTAATATGTTGGCCAATATGGAATTTTCGTAACTCAATATATCACAATCAACAGCAACCCAACATACAATTCCTAGCGCAACAGATTCACAGCAGCTTATCAAATGTGGAGGGACAGGGCAATACTCACAGCAAATTCCGAAGGGACCGTTTTGTAGAGATCCCAATTGGGAAATCTGCTTTGGCAAGACAGTGGGCAGGATCCTCAATCGACGAATGGGTACTGCGTAGTGATGCGTCCTGGTGCGAAAGGAAGAAGATGGGCGGTCTAGGATGGATCTTACGCCGGGGAGACGGGTCGTTGGTGTCAGCAGGATTTCGCAACATCCACCATCAATGGAAAGTGAGCTGGTTTGAAGCCTTGGCAGTCACAGAAGGTCTGAAATCAATTTCTCTTGCTCCCCCCAAGTTGATTATCGAGCTTGACTCTATTCAGGTGGTACATCTGCTTGAGGGGAAGGAAGAAGATAAGACAGAACTCACCTTCTTTGTCGAGGAAGCTCAGCGGTTGTTCTCTGGTTTGGGAGTTCAGCCGATTCGGCATATCCCTAGAAAACAGAACAAAGTAGCCCATTTTTTGGCCCAACAGGCAGTTTCGACTGATTCAGCGGAAAGTTGGGTAAATGATTTTCCTTCTTGGTTATTCTTTATGAATTTAGATGAGATTAGGTGTGAAACTCACGATGGTGGGGGGCCTATCCCACCAATGTCTGCTTTTTAA

Coding sequence (CDS)

ATGCAAAAAAGCCTCCTAATATGTTGGCCAATATGGAATTTTCGTAACTCAATATATCACAATCAACAGCAACCCAACATACAATTCCTAGCGCAACAGATTCACAGCAGCTTATCAAATGTGGAGGGACAGGGCAATACTCACAGCAAATTCCGAAGGGACCGTTTTGTAGAGATCCCAATTGGGAAATCTGCTTTGGCAAGACAGTGGGCAGGATCCTCAATCGACGAATGGGTACTGCGTAGTGATGCGTCCTGGTGCGAAAGGAAGAAGATGGGCGGTCTAGGATGGATCTTACGCCGGGGAGACGGGTCGTTGGTGTCAGCAGGATTTCGCAACATCCACCATCAATGGAAAGTGAGCTGGTTTGAAGCCTTGGCAGTCACAGAAGGTCTGAAATCAATTTCTCTTGCTCCCCCCAAGTTGATTATCGAGCTTGACTCTATTCAGGTGGTACATCTGCTTGAGGGGAAGGAAGAAGATAAGACAGAACTCACCTTCTTTGTCGAGGAAGCTCAGCGGTTGTTCTCTGGTTTGGGAGTTCAGCCGATTCGGCATATCCCTAGAAAACAGAACAAAGTAGCCCATTTTTTGGCCCAACAGGCAGTTTCGACTGATTCAGCGGAAAGTTGGGTAAATGATTTTCCTTCTTGGTTATTCTTTATGAATTTAGATGAGATTAGGTGTGAAACTCACGATGGTGGGGGGCCTATCCCACCAATGTCTGCTTTTTAA

Protein sequence

MQKSLLICWPIWNFRNSIYHNQQQPNIQFLAQQIHSSLSNVEGQGNTHSKFRRDRFVEIPIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWKVSWFEALAVTEGLKSISLAPPKLIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFSGLGVQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVNDFPSWLFFMNLDEIRCETHDGGGPIPPMSAF
Homology
BLAST of Lcy08g004820 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-22
Identity = 63/210 (30.00%), Postives = 108/210 (51.43%), Query Frame = 0

Query: 2   QKSLLICWPIWNFRNSIYHNQQQPNIQFLAQQIHSSLSNVEGQG-NTHSKFRRDRFVEIP 61
           ++S++I W IW  RN        P  + +   I   + N  G+  N   K        I 
Sbjct: 10  RRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIR 69

Query: 62  IGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWKV 121
             +     QW   + + W L ++A+W      GG+GWILR   G ++ A  R I  +  +
Sbjct: 70  RIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 129

Query: 122 SWFEALAVTEGLKSISLAPPKLI-IELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFSGL 181
           ++ E +A+ EGL++I     + I +E DS++ +HLL  + +D+TE+ + +EE  ++   +
Sbjct: 130 TYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDM 189

Query: 182 GVQPIRHIPRKQNKVAHFLAQQAVSTDSAE 210
            +  +RHI R+ NKVAH LA++A+  D  E
Sbjct: 190 EIVSMRHISREANKVAHGLARRAMENDLRE 219

BLAST of Lcy08g004820 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.7e-21
Identity = 69/222 (31.08%), Postives = 122/222 (54.95%), Query Frame = 0

Query: 2   QKSLLICWPIWNFRN-SIYH--NQQQPNIQFLAQQ--IHSSLSNVEGQGNTHSKFRRDRF 61
           ++S++I W IW  RN SI+   + +  +IQ +  +  I+S+  +   +G + +K   D  
Sbjct: 10  RRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANK---DLH 69

Query: 62  VEIPIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHH 121
           +   IG +  AR W   + + W L +DA+W      GG+GWILR   G ++ A  R I  
Sbjct: 70  LIRRIGDNTGAR-WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 129

Query: 122 QWKVSWFEALAVTEGLKSISLAPPKLI---------IELDSIQVVHLLEGKEEDKTELTF 181
           +  +++ E +A+ EGL++I     + I         +E DS++ +HLL  + +D+TE+ +
Sbjct: 130 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 189

Query: 182 FVEEAQRLFSGLGVQPIRHIPRKQNKVAHFLAQQAVSTDSAE 210
            +EE  ++   + +  +RHI R+ NKVAH LA++A+  D  E
Sbjct: 190 LLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAMENDLRE 227

BLAST of Lcy08g004820 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 69/219 (31.51%), Postives = 104/219 (47.49%), Query Frame = 0

Query: 5   LLICWPIWNFRNSIYHNQQQPNIQFLAQQIHSSLSNVEGQGNTHSKFRRDRFVEIPIGKS 64
           L+  W IWN RN +    +  +   + QQ+   +        T S ++ +  + +     
Sbjct: 14  LIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFV--------TESSYQSETSLSMLHKTL 73

Query: 65  ALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWKVSWFE 124
               +W    +  W L +DASW +    GG+GWI+R  DG +V AG R +     V   E
Sbjct: 74  NNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLE 133

Query: 125 ALAVTEGLKSIS----LAPPKLIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFSGLG 184
           A A+ EGL++++    L P  L IE DS +V  LL  K ED T+  + VEE   L     
Sbjct: 134 ASAILEGLRNLTNLGVLRP--LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCE 193

Query: 185 VQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVNDFPSWL 220
           +     + R+ N  AH LAQ+A     +  WV+ FP+WL
Sbjct: 194 ILAFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

BLAST of Lcy08g004820 vs. ExPASy TrEMBL
Match: A2YJD5 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_25347 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 68/230 (29.57%), Postives = 102/230 (44.35%), Query Frame = 0

Query: 5   LLICWPIWNFRNSIYHNQQQPNIQFLAQQI---HSSL--------------SNVEGQGNT 64
           LL+ W  W+ RN + H +  P I+   + I   H+SL               +V GQ   
Sbjct: 626 LLLLWRAWHIRNEVVHGKHAPPIEASHRFIVSYHTSLLEIKQFPKADLTKGKHVIGQMVG 685

Query: 65  HSKFRRDRFVEIPIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLV 124
           HS  R  R  E       L   W         L  D S+ E    GG+G ILR   G +V
Sbjct: 686 HSG-RHQRQPE------TLPYTWKKPDTGWMKLNVDGSFQEHDGSGGIGAILRNSAGEVV 745

Query: 125 SAGFRNIHHQWKVSWFEALAVTEGLKSI---SLAPPKLIIELDSIQVVHLLEGKEEDKTE 184
            A   +++        E LA  +GL  +   +L P  ++IE D +Q + L++ KEE++++
Sbjct: 746 FASCGSMNRCGGALEAELLACRDGLTLVLQWTLLP--IVIESDCLQAIQLIQSKEEERSD 805

Query: 185 LTFFVEEAQRLFSGLGVQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVND 215
           L F + E + L +G     I  I R QN V+H LA +  S      W++D
Sbjct: 806 LAFLIREIKHLMAGNRDIVIMKIHRNQNSVSHALAYKGCSEALTAFWLDD 846

BLAST of Lcy08g004820 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 55/206 (26.70%), Postives = 97/206 (47.09%), Query Frame = 0

Query: 2   QKSLLICWPIWNFRNSIYHNQ-QQPNIQ----FLAQQIHSSLSNVEGQGNTHSKFRRDRF 61
           Q  L++ W IW +RN I H+  +QP  Q    F   +I+   +N+ G  N       D+ 
Sbjct: 17  QSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLN-----MEDKN 76

Query: 62  VEIPIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHH 121
           +   +G       W   +   W L  DA+W +    GGLGWI+R  +G  + A       
Sbjct: 77  LPRTVG-------WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMA------- 136

Query: 122 QWKVSWFEALAVTEGLKSISLAPPKLIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLF 181
           +   +  ++L +  G+        K+ +E D ++VV+++       TE++  VE+  +  
Sbjct: 137 ECLKALSQSLTLEAGI--------KIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEM 195

Query: 182 SGLGVQPIRHIPRKQNKVAHFLAQQA 203
             L ++  +H+P K N VAH +A++A
Sbjct: 197 ESLPIEGFKHLPMKANGVAHGIARRA 195

BLAST of Lcy08g004820 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-21
Identity = 63/210 (30.00%), Postives = 108/210 (51.43%), Query Frame = 0

Query: 2   QKSLLICWPIWNFRNSIYHNQQQPNIQFLAQQIHSSLSNVEGQG-NTHSKFRRDRFVEIP 61
           ++S++I W IW  RN        P  + +   I   + N  G+  N   K        I 
Sbjct: 10  RRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIR 69

Query: 62  IGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWKV 121
             +     QW   + + W L ++A+W      GG+GWILR   G ++ A  R I  +  +
Sbjct: 70  RIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 129

Query: 122 SWFEALAVTEGLKSISLAPPKLI-IELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFSGL 181
           ++ E +A+ EGL++I     + I +E DS++ +HLL  + +D+TE+ + +EE  ++   +
Sbjct: 130 TYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDM 189

Query: 182 GVQPIRHIPRKQNKVAHFLAQQAVSTDSAE 210
            +  +RHI R+ NKVAH LA++A+  D  E
Sbjct: 190 EIVSMRHISREANKVAHGLARRAMENDLRE 219

BLAST of Lcy08g004820 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-20
Identity = 69/222 (31.08%), Postives = 122/222 (54.95%), Query Frame = 0

Query: 2   QKSLLICWPIWNFRN-SIYH--NQQQPNIQFLAQQ--IHSSLSNVEGQGNTHSKFRRDRF 61
           ++S++I W IW  RN SI+   + +  +IQ +  +  I+S+  +   +G + +K   D  
Sbjct: 10  RRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANK---DLH 69

Query: 62  VEIPIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHH 121
           +   IG +  AR W   + + W L +DA+W      GG+GWILR   G ++ A  R I  
Sbjct: 70  LIRRIGDNTGAR-WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 129

Query: 122 QWKVSWFEALAVTEGLKSISLAPPKLI---------IELDSIQVVHLLEGKEEDKTELTF 181
           +  +++ E +A+ EGL++I     + I         +E DS++ +HLL  + +D+TE+ +
Sbjct: 130 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 189

Query: 182 FVEEAQRLFSGLGVQPIRHIPRKQNKVAHFLAQQAVSTDSAE 210
            +EE  ++   + +  +RHI R+ NKVAH LA++A+  D  E
Sbjct: 190 LLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAMENDLRE 227

BLAST of Lcy08g004820 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-19
Identity = 69/219 (31.51%), Postives = 104/219 (47.49%), Query Frame = 0

Query: 5   LLICWPIWNFRNSIYHNQQQPNIQFLAQQIHSSLSNVEGQGNTHSKFRRDRFVEIPIGKS 64
           L+  W IWN RN +    +  +   + QQ+   +        T S ++ +  + +     
Sbjct: 14  LIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFV--------TESSYQSETSLSMLHKTL 73

Query: 65  ALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWKVSWFE 124
               +W    +  W L +DASW +    GG+GWI+R  DG +V AG R +     V   E
Sbjct: 74  NNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLE 133

Query: 125 ALAVTEGLKSIS----LAPPKLIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFSGLG 184
           A A+ EGL++++    L P  L IE DS +V  LL  K ED T+  + VEE   L     
Sbjct: 134 ASAILEGLRNLTNLGVLRP--LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCE 193

Query: 185 VQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVNDFPSWL 220
           +     + R+ N  AH LAQ+A     +  WV+ FP+WL
Sbjct: 194 ILAFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

BLAST of Lcy08g004820 vs. NCBI nr
Match: XP_006473914.2 (uncharacterized protein LOC102629934 [Citrus sinensis])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 63/232 (27.16%), Postives = 114/232 (49.14%), Query Frame = 0

Query: 1   MQKSLLICWPIWNFRN-SIYHNQQQPNIQFLAQQIHSSLSNVEGQGNTHSKFRRDRFVEI 60
           M+  + +CW IW+ RN +I+ N+++ +        H S++  E    ++ + +  +  + 
Sbjct: 45  MELIVAVCWSIWHSRNLAIFKNKREDS--------HLSVAAAEALVQSYKRIQMPQMSKS 104

Query: 61  PIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWK 120
           P    A+ ++W+      + +  DA+    ++  GLG ++R  +G +++A  +      K
Sbjct: 105 PPTSLAIQQKWSYPPEGWFKVNVDAAVKMEQQRTGLGIVIRNSEGKVMAAAMKPSKFLSK 164

Query: 121 VSWFEALAVTEGL---KSISLAPPKLIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLF 180
           V   EA A   GL   +++   P  LIIE DS +VV L+  K+  +TE+ + + E Q   
Sbjct: 165 VDAAEAEAAKFGLEIAENVGCFP--LIIESDSKEVVELISLKKSTRTEIFWVISEIQDRM 224

Query: 181 SGLGVQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVNDFP--SWLFFMNLDE 227
             L    I+H PR  N +AH LA  A+  +    WV++ P  S   F  L+E
Sbjct: 225 KRLKKVKIQHTPRGCNSLAHSLANLALELNDFVFWVDNIPTNSLYLFTQLNE 266

BLAST of Lcy08g004820 vs. NCBI nr
Match: XP_015382610.1 (uncharacterized protein LOC107175578 [Citrus sinensis])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-12
Identity = 54/223 (24.22%), Postives = 100/223 (44.84%), Query Frame = 0

Query: 1   MQKSLLICWPIWNFRNSIYHNQQQPNIQFLAQQIHSSLSNVEGQGNTHSKFRRDRFVEIP 60
           ++  ++ICW +WN RN +    ++ N Q L  +  + L         + + ++   V   
Sbjct: 24  LELMIMICWMVWNARNEMLFKGKRENPQALVAKAEAVL-------EAYKRVQKPEQVRKE 83

Query: 61  IGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQWKV 120
             +    + W         +  DA+    K + GLG I+R   G++++A  +       V
Sbjct: 84  SQQVQTQQVWNPPQNGFVKVNVDAATSSEKHLAGLGAIIRDDQGTVIAAAIKISKFNGDV 143

Query: 121 SWFEALAVTEGLKSISLAPPK-LIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFSGL 180
           S+ EA  +  GL+    A  K LI+E D+  VV L+  K+  K+E+ + + E Q L    
Sbjct: 144 SFAEAETLEWGLQIARNASAKALIVESDAQSVVKLVNNKQGGKSEIFWIISEIQNLIRNF 203

Query: 181 GVQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVNDFPSWLFFM 223
            +  I +  R +N + H LA+  +       W+  +PS L ++
Sbjct: 204 ELVSINYTHRSRNAITHSLAKLTLEKCENVVWMGPYPSQLMYL 239

BLAST of Lcy08g004820 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-09
Identity = 48/222 (21.62%), Postives = 87/222 (39.19%), Query Frame = 0

Query: 7   ICWPIWNFRNSIYHNQQQPNIQFLAQQ--------IHSSLSNVEGQGNTHSKFRRDRFVE 66
           + W IW   N +  N  +   Q   +         + ++++N +  GN ++   R+    
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRN---- 106

Query: 67  IPIGKSALARQWAGSSIDEWVLRSDASWCERKKMGGLGWILRRGDGSLVSAGFRNIHHQW 126
                     +W+    D+     DAS  ER  + GLGWILR   G+++  G      + 
Sbjct: 107 ---------TKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRM 166

Query: 127 KVSWFEALAVTEGLK-SISLAPPKLIIELDSIQVVHLLEGKEEDKTELTFFVEEAQRLFS 186
                E   +   ++ S      K+I E D+  +  ++  K  +   L  F++  Q    
Sbjct: 167 TTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIP 226

Query: 187 GLGVQPIRHIPRKQNKVAHFLAQQAVSTDSAESWVNDFPSWL 220
                      R+QN  A FLA+QA+  ++  S  +  P +L
Sbjct: 227 SFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFL 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CP266.7e-2230.00uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV15.7e-2131.08uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DNV94.8e-2031.51uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A2YJD51.7e-1229.57Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
A0A6J1D4B63.7e-1226.70uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
XP_022143535.11.4e-2130.00uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.11.2e-2031.08uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022155262.11.0e-1931.51uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_006473914.21.1e-1327.16uncharacterized protein LOC102629934 [Citrus sinensis][more]
XP_015382610.12.0e-1224.22uncharacterized protein LOC107175578 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
AT5G65005.15.0e-0921.62Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 82..202
e-value: 2.1E-17
score: 63.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 76..204
e-value: 7.8E-12
score: 47.4
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 66..214
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 82..199
e-value: 4.1999E-17
score: 72.732
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 78..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g004820.1Lcy08g004820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity