Lcy08g004760 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g004760
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr08: 6214647 .. 6215010 (-)
RNA-Seq ExpressionLcy08g004760
SyntenyLcy08g004760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCGTATGCACCGGAACAAAACCCCCATCATCTTATATATCGCAAATCTGGACGGCTACAAATCCAAACATTTTTATTTCTTCATTTTCCTAACATGACTCATTTCCACCTCCGTCTCGTCCTCGCCATTTTTCTTCTTCTTCTCACTCCGACCACCGCCGCCGCCTCCGCCGCAGCCGCCGTCCGGCCAAGGATTCTGATGAGAAGACAAGTGGTTTTCCGGCCATCTTCGCCGTCGGCAGCCAAATCCATAGACTTCGAAGATCAGAAGCGAAGAGTCCCCACAGGATCAAACCCTTTACACAACAAACGGTGAAGATTATTTCACAAGCTTCTCAAATTAAAAGTATCAATTTTTT

mRNA sequence

ATGTTTGCGTATGCACCGGAACAAAACCCCCATCATCTTATATATCGCAAATCTGGACGGCTACAAATCCAAACATTTTTATTTCTTCATTTTCCTAACATGACTCATTTCCACCTCCGTCTCGTCCTCGCCATTTTTCTTCTTCTTCTCACTCCGACCACCGCCGCCGCCTCCGCCGCAGCCGCCGTCCGGCCAAGGATTCTGATGAGAAGACAAGTGGTTTTCCGGCCATCTTCGCCGTCGGCAGCCAAATCCATAGACTTCGAAGATCAGAAGCGAAGAGTCCCCACAGGATCAAACCCTTTACACAACAAACGGTGAAGATTATTTCACAAGCTTCTCAAATTAAAAGTATCAATTTTTT

Coding sequence (CDS)

ATGTTTGCGTATGCACCGGAACAAAACCCCCATCATCTTATATATCGCAAATCTGGACGGCTACAAATCCAAACATTTTTATTTCTTCATTTTCCTAACATGACTCATTTCCACCTCCGTCTCGTCCTCGCCATTTTTCTTCTTCTTCTCACTCCGACCACCGCCGCCGCCTCCGCCGCAGCCGCCGTCCGGCCAAGGATTCTGATGAGAAGACAAGTGGTTTTCCGGCCATCTTCGCCGTCGGCAGCCAAATCCATAGACTTCGAAGATCAGAAGCGAAGAGTCCCCACAGGATCAAACCCTTTACACAACAAACGGTGA

Protein sequence

MFAYAPEQNPHHLIYRKSGRLQIQTFLFLHFPNMTHFHLRLVLAIFLLLLTPTTAAASAAAAVRPRILMRRQVVFRPSSPSAAKSIDFEDQKRRVPTGSNPLHNKR
Homology
[Close]
BLAST of Lcy08g004760 vs. NCBI nr
Match: KAG6572280.1 (hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 8.2e-19
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 34  MTHFHLRLVLAIFLLLLTPTTAAASAAAAVRPRILMRRQVVFRPSSPSAAKSIDFEDQKR 93
           MTHFHL LVLAIF LLLTPTT A +A+AA +PRILMR+QVVFRP SPS  K  ++E+QKR
Sbjct: 1   MTHFHLSLVLAIF-LLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKR 60

Query: 94  RVPTGSNPLHNKR 107
           RVPTGSNPLHNKR
Sbjct: 61  RVPTGSNPLHNKR 72

[Close]
BLAST of Lcy08g004760 vs. NCBI nr
Match: KAG6589151.1 (hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 34 MTHFHLRLVLAIFLLLLTPTTAAASAAAAVRPRILMRRQVVFRPSSPSAAKSIDFEDQKR 93
          MTHFHLRL+L I LLLLTPTTAA  A+AAVRPRI +R+QV+FRPSSPS  K IDFEDQKR
Sbjct: 1  MTHFHLRLLLPILLLLLTPTTAATVASAAVRPRISLRKQVIFRPSSPSTTKPIDFEDQKR 60

Query: 94 RVPT 98
          RVPT
Sbjct: 61 RVPT 64

The following BLAST results are available for this feature:
BLAST of Lcy08g004760 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g004760 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g004760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572280.18.2e-1976.71hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589151.11.0e-1679.69hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy08g004760 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g004760.1Lcy08g004760.1mRNA