Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATTTTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAA
mRNA sequence
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATTTTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAA
Coding sequence (CDS)
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATTTTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAA
Protein sequence
MGLPPFSPSDLLLWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRARILKKPLVSQNP
Homology
BLAST of Lcy08g004650 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 8.7e-19
Identity = 59/187 (31.55%), Postives = 88/187 (47.06%), Query Frame = 0
Query: 30 QLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFL 89
++L + S ++ WR +S GRLTL +A LSS+ + +S +PQSI ++D+L RTFL
Sbjct: 15 EILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFL 74
Query: 90 WCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRYYQEDQPLWKRLV 149
W G++ + + L+ W V + K GG K N AL K WR QE LW ++
Sbjct: 75 W-GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVL 134
Query: 150 NAKYTIPQAGALPTQSRFSNSRAPWFS-----------IVKHAHHFKQFTKWGLRNGNKI 206
KY + + SR+ + W S +V H W +G +I
Sbjct: 135 QKKYHVGEI----RDSRWLIPKGSWSSTWRSIAIGLRDVVSHG------VGWIPGDGQQI 190
BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match:
A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 2.3e-54
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 313 LGGNPRSRSFWSQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 372
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 373 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRY 432
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 433 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSS 492
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 493 LSFWHSKWHNNI-PLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTW 552
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 553 DSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 612
BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665
BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665
BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match:
A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)
HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 111/256 (43.36%), Postives = 156/256 (60.94%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ LF + + KL NW++++ISKGGRLTLI++TLSS+ Y LSVF+ P S
Sbjct: 1329 LGGNPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSST 1388
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K ++KL R FLW G S LI+W +VT K+ GG + +V+N AL KWLWRY
Sbjct: 1389 YKNIEKLWRNFLWKG-SCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRY 1448
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
Y E LW+RL++ KY G LP+ S+S+APW SI+ + FK W L NG++
Sbjct: 1449 YSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQ 1508
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
I FW +WS G L+ +PR FA S ++ + + W S++ W I RR L DRE+S W
Sbjct: 1509 ISFWYSNWSPE-GCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTW 1568
Query: 258 DELIPSLPRPSSSRGP 274
+++ +LP ++RGP
Sbjct: 1569 QKILENLPILRTNRGP 1582
BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match:
A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)
HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 234 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 293
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 294 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRY 353
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 354 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSS 413
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 414 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 473
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 474 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 533
BLAST of Lcy08g004650 vs. NCBI nr
Match:
KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 4.7e-54
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 313 LGGNPRSRSFWSQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 372
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 373 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRY 432
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 433 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSS 492
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 493 LSFWHSKWHNNI-PLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTW 552
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 553 DSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 612
BLAST of Lcy08g004650 vs. NCBI nr
Match:
TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 111/256 (43.36%), Postives = 156/256 (60.94%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ LF + + KL NW++++ISKGGRLTLI++TLSS+ Y LSVF+ P S
Sbjct: 1329 LGGNPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSST 1388
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K ++KL R FLW G S LI+W +VT K+ GG + +V+N AL KWLWRY
Sbjct: 1389 YKNIEKLWRNFLWKG-SCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRY 1448
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
Y E LW+RL++ KY G LP+ S+S+APW SI+ + FK W L NG++
Sbjct: 1449 YSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQ 1508
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
I FW +WS G L+ +PR FA S ++ + + W S++ W I RR L DRE+S W
Sbjct: 1509 ISFWYSNWSPE-GCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTW 1568
Query: 258 DELIPSLPRPSSSRGP 274
+++ +LP ++RGP
Sbjct: 1569 QKILENLPILRTNRGP 1582
BLAST of Lcy08g004650 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665
BLAST of Lcy08g004650 vs. NCBI nr
Match:
TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 234 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 293
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 294 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRY 353
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 354 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSS 413
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 414 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 473
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 474 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 533
BLAST of Lcy08g004650 vs. NCBI nr
Match:
KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ F Q + KL W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
K+++K R FLW G S D LI+W++ T+ K+ GG K K +N AL KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
+ E LWK+ ++AKYT G +P R S++ +PW +I K ++ W +G+
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
+ FW W NN+ PL+L PR +A S+ Q V E W S WN+ PRRPL +RE W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605
Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
D + SLPR ++RG ++ A A + SSI + K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665
BLAST of Lcy08g004650 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 74.3 bits (181), Expect = 1.9e-13
Identity = 50/194 (25.77%), Postives = 81/194 (41.75%), Query Frame = 0
Query: 13 LWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFK 72
L PLL +GP L+ K V++ W ++S GRL LI + + S++ + +S F+
Sbjct: 28 LGLPLLTKKMTTSDYGP-LVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 87
Query: 73 VPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIK 132
+P + K++D + +FLW G + N + ++W V KD GG K +N
Sbjct: 88 LPSACIKEIDSICSSFLWSGPEL-NTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG---- 147
Query: 133 WLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGL 192
W ++ T+ W I+KH F K +
Sbjct: 148 ----------SFWS--ISGNTTL--------------GSWMWKKILKHRALASGFVKHDI 189
Query: 193 RNGNKIFFWQDSWS 207
NG+ FW D+WS
Sbjct: 208 HNGSNTSFWFDNWS 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 8.7e-19 | 31.55 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UTI6 | 2.3e-54 | 40.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7US62 | 1.1e-53 | 40.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3CA17 | 1.1e-53 | 40.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3BL61 | 1.1e-53 | 43.36 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3DZM5 | 1.1e-53 | 40.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAA0056839.1 | 4.7e-54 | 40.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
TYK00493.1 | 2.3e-53 | 43.36 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK08190.1 | 2.3e-53 | 40.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK28859.1 | 2.3e-53 | 40.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0057507.1 | 2.3e-53 | 40.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 1.9e-13 | 25.77 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |