Lcy08g004650 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g004650
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr08: 6114612 .. 6115565 (+)
RNA-Seq ExpressionLcy08g004650
SyntenyLcy08g004650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATTTTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAA

mRNA sequence

ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATTTTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAA

Coding sequence (CDS)

ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATTTTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAA

Protein sequence

MGLPPFSPSDLLLWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRARILKKPLVSQNP
Homology
BLAST of Lcy08g004650 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.7e-19
Identity = 59/187 (31.55%), Postives = 88/187 (47.06%), Query Frame = 0

Query: 30  QLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFL 89
           ++L + S ++  WR   +S  GRLTL +A LSS+  + +S   +PQSI  ++D+L RTFL
Sbjct: 15  EILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFL 74

Query: 90  WCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRYYQEDQPLWKRLV 149
           W G++ +   + L+ W  V + K  GG      K  N AL  K  WR  QE   LW  ++
Sbjct: 75  W-GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVL 134

Query: 150 NAKYTIPQAGALPTQSRFSNSRAPWFS-----------IVKHAHHFKQFTKWGLRNGNKI 206
             KY + +       SR+   +  W S           +V H         W   +G +I
Sbjct: 135 QKKYHVGEI----RDSRWLIPKGSWSSTWRSIAIGLRDVVSHG------VGWIPGDGQQI 190

BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.3e-54
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
           LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 313 LGGNPRSRSFWSQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 372

Query: 78  CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
            K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 373 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRY 432

Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
           + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 433 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSS 492

Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
           + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 493 LSFWHSKWHNNI-PLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTW 552

Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
           D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 553 DSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 612

BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18   LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
            LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425

Query: 78   CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
             K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485

Query: 138  YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
            + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545

Query: 198  IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
            + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605

Query: 258  DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
            D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665

BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18   LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
            LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425

Query: 78   CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
             K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485

Query: 138  YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
            + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545

Query: 198  IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
            + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605

Query: 258  DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
            D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665

BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 111/256 (43.36%), Postives = 156/256 (60.94%), Query Frame = 0

Query: 18   LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
            LG NP+  LF   +  +   KL NW++++ISKGGRLTLI++TLSS+  Y LSVF+ P S 
Sbjct: 1329 LGGNPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSST 1388

Query: 78   CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
             K ++KL R FLW G S       LI+W +VT  K+ GG    + +V+N AL  KWLWRY
Sbjct: 1389 YKNIEKLWRNFLWKG-SCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRY 1448

Query: 138  YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
            Y E   LW+RL++ KY     G LP+    S+S+APW SI+ +   FK    W L NG++
Sbjct: 1449 YSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQ 1508

Query: 198  IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
            I FW  +WS   G L+  +PR FA S  ++  + + W S++  W I  RR L DRE+S W
Sbjct: 1509 ISFWYSNWSPE-GCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTW 1568

Query: 258  DELIPSLPRPSSSRGP 274
             +++ +LP   ++RGP
Sbjct: 1569 QKILENLPILRTNRGP 1582

BLAST of Lcy08g004650 vs. ExPASy TrEMBL
Match: A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
           LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 234 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 293

Query: 78  CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
            K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 294 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRY 353

Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
           + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 354 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSS 413

Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
           + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 414 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 473

Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
           D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 474 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 533

BLAST of Lcy08g004650 vs. NCBI nr
Match: KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 4.7e-54
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
           LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 313 LGGNPRSRSFWSQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 372

Query: 78  CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
            K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 373 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRY 432

Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
           + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 433 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSS 492

Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
           + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 493 LSFWHSKWHNNI-PLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTW 552

Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
           D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 553 DSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 612

BLAST of Lcy08g004650 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 111/256 (43.36%), Postives = 156/256 (60.94%), Query Frame = 0

Query: 18   LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
            LG NP+  LF   +  +   KL NW++++ISKGGRLTLI++TLSS+  Y LSVF+ P S 
Sbjct: 1329 LGGNPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSST 1388

Query: 78   CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
             K ++KL R FLW G S       LI+W +VT  K+ GG    + +V+N AL  KWLWRY
Sbjct: 1389 YKNIEKLWRNFLWKG-SCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRY 1448

Query: 138  YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
            Y E   LW+RL++ KY     G LP+    S+S+APW SI+ +   FK    W L NG++
Sbjct: 1449 YSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQ 1508

Query: 198  IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
            I FW  +WS   G L+  +PR FA S  ++  + + W S++  W I  RR L DRE+S W
Sbjct: 1509 ISFWYSNWSPE-GCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTW 1568

Query: 258  DELIPSLPRPSSSRGP 274
             +++ +LP   ++RGP
Sbjct: 1569 QKILENLPILRTNRGP 1582

BLAST of Lcy08g004650 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18   LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
            LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425

Query: 78   CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
             K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485

Query: 138  YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
            + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545

Query: 198  IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
            + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605

Query: 258  DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
            D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665

BLAST of Lcy08g004650 vs. NCBI nr
Match: TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
           LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 234 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 293

Query: 78  CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
            K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 294 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRY 353

Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
           + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 354 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSS 413

Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
           + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 414 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 473

Query: 258 DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
           D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 474 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 533

BLAST of Lcy08g004650 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-53
Identity = 122/305 (40.00%), Postives = 170/305 (55.74%), Query Frame = 0

Query: 18   LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
            LG NP+   F  Q +     KL  W++S ISKGGRLTL++A+LSS+ TY LS FK P S+
Sbjct: 1366 LGGNPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSV 1425

Query: 78   CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIKWLWRY 137
             K+++K  R FLW G S D     LI+W++ T+ K+ GG    K K +N AL  KWLWRY
Sbjct: 1426 YKEIEKHWRDFLW-GGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRY 1485

Query: 138  YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
            + E   LWK+ ++AKYT    G +P   R S++ +PW +I K    ++    W   +G+ 
Sbjct: 1486 HNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSS 1545

Query: 198  IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
            + FW   W NN+ PL+L  PR +A S+ Q   V E W   S  WN+ PRRPL +RE   W
Sbjct: 1546 LSFWHSKWHNNI-PLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTW 1605

Query: 258  DELIPSLPRPSSSRG------------PFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRA 311
            D +  SLPR  ++RG             ++ A A    +  SSI +     K L +LWR+
Sbjct: 1606 DSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRS 1665

BLAST of Lcy08g004650 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-13
Identity = 50/194 (25.77%), Postives = 81/194 (41.75%), Query Frame = 0

Query: 13  LWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFK 72
           L  PLL        +GP L+ K  V++  W   ++S  GRL LI + + S++ + +S F+
Sbjct: 28  LGLPLLTKKMTTSDYGP-LVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 87

Query: 73  VPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDFFKTKVSNNALQIK 132
           +P +  K++D +  +FLW G  + N  +  ++W  V   KD GG      K +N      
Sbjct: 88  LPSACIKEIDSICSSFLWSGPEL-NTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG---- 147

Query: 133 WLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGL 192
                       W   ++   T+                  W  I+KH      F K  +
Sbjct: 148 ----------SFWS--ISGNTTL--------------GSWMWKKILKHRALASGFVKHDI 189

Query: 193 RNGNKIFFWQDSWS 207
            NG+   FW D+WS
Sbjct: 208 HNGSNTSFWFDNWS 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F68.7e-1931.55Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A5A7UTI62.3e-5440.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7US621.1e-5340.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CA171.1e-5340.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BL611.1e-5343.36LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DZM51.1e-5340.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0056839.14.7e-5440.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... [more]
TYK00493.12.3e-5343.36LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK08190.12.3e-5340.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK28859.12.3e-5340.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0057507.12.3e-5340.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G24255.11.9e-1325.77RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF39RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEINcoord: 14..220
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 14..220

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g004650.1Lcy08g004650.1mRNA