Lcy08g004590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g004590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-H2 finger protein ATL8
Location	Chr08: 6085368 .. 6085913 (-)
RNA-Seq Expression	Lcy08g004590
Synteny	Lcy08g004590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGCTATTTTACGACTCTCGCGGCTAATACTTCGTCGGCGTCCGTGTCGGCGCCTCCCCCAGAGGCGGTCCGCGCTGGAGTCCAACTTCGTAGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCGGTGCCGCTACAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCCCTCCTGAAATTCACGTACAAAACGTCAGGGTCCGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATCCGGCAGTTGCCGCAGTGCGGGCATTGTTTCCATGTAAGCTGCGTAGACACGTGGCTGGGGTCCCACTCGTCCTGCCCCTCTTGCCGACAAATTCTTGTGGTGGCGAGATTCCAGAAGCGCGGGCAGTTTCCGGCAGTGGTCCACGGCGGCGGTCACGACGAGGAGGAGCACAAGAGGAGGGAAGATAACAATGCTAACAACACGGGTTTGGGATTTTTGCCTTGA

mRNA sequence

ATGACTAGCTATTTTACGACTCTCGCGGCTAATACTTCGTCGGCGTCCGTGTCGGCGCCTCCCCCAGAGGCGGTCCGCGCTGGAGTCCAACTTCGTAGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCGGTGCCGCTACAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCCCTCCTGAAATTCACGTACAAAACGTCAGGGTCCGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATCCGGCAGTTGCCGCAGTGCGGGCATTGTTTCCATGTAAGCTGCGTAGACACGTGGCTGGGGTCCCACTCGTCCTGCCCCTCTTGCCGACAAATTCTTGTGGTGGCGAGATTCCAGAAGCGCGGGCAGTTTCCGGCAGTGGTCCACGGCGGCGGTCACGACGAGGAGGAGCACAAGAGGAGGGAAGATAACAATGCTAACAACACGGGTTTGGGATTTTTGCCTTGA

Coding sequence (CDS)

ATGACTAGCTATTTTACGACTCTCGCGGCTAATACTTCGTCGGCGTCCGTGTCGGCGCCTCCCCCAGAGGCGGTCCGCGCTGGAGTCCAACTTCGTAGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCGGTGCCGCTACAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCCCTCCTGAAATTCACGTACAAAACGTCAGGGTCCGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATCCGGCAGTTGCCGCAGTGCGGGCATTGTTTCCATGTAAGCTGCGTAGACACGTGGCTGGGGTCCCACTCGTCCTGCCCCTCTTGCCGACAAATTCTTGTGGTGGCGAGATTCCAGAAGCGCGGGCAGTTTCCGGCAGTGGTCCACGGCGGCGGTCACGACGAGGAGGAGCACAAGAGGAGGGAAGATAACAATGCTAACAACACGGGTTTGGGATTTTTGCCTTGA

Protein sequence

MTSYFTTLAANTSSASVSAPPPEAVRAGVQLRSDSRGAALCPNLYGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNANNTGLGFLP

Homology

[Close]

BLAST of Lcy08g004590 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 6.3e-30
Identity = 66/114 (57.89%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 60  ASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHV 119
           A+AN+GLKKK+L+SL K TY       E     ECAICL EF  G+E+R LPQCGH FHV
Sbjct: 72  AAANKGLKKKVLRSLPKLTYSPDSPPAEK--LVECAICLTEFAAGDELRVLPQCGHGFHV 131

Query: 120 SCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNAN 174
           SC+DTWLGSHSSCPSCRQILVV R  K G  P     G   +   K+RED   N
Sbjct: 132 SCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of Lcy08g004590 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 60  ASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHV 119
           A+AN+GLKKK+LQSL K T+  S    E +  AECAICLAEF  G+E+R LPQCGH FHV
Sbjct: 79  AAANKGLKKKVLQSLPKLTF--SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHV 138

Query: 120 SCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNANNTGLGF 179
           +C+DTWLGSHSSCPSCRQILVVAR  K G  P     G   E E + R     ++    F
Sbjct: 139 ACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRIKQGEDDPN-SF 197

Query: 180 LP 182
           LP
Sbjct: 199 LP 197

[Close]

BLAST of Lcy08g004590 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-22
Identity = 69/183 (37.70%), Postives = 93/183 (50.82%), Query Frame = 0


Query: 18  SAPPPEAVRAGVQLRSDS---RGAALCPNL------------YGRAHSGGGAATANQASA 77
           +APPP+     +   SD      A LC  +            + R  + GG    +  S 
Sbjct: 11  AAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGG----DSPSP 70

Query: 78  NRGLKKKILQSLLKFTY----KTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFH 137
           N+GLKKK LQSL + T+     TSG+  E   + ECAICL +F +GEEIR LP CGH FH
Sbjct: 71  NKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 130

Query: 138 VSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNANNTGLG 182
           V C+D WL S SSCPSCR+IL   R  + G            ++ H+ +   +++ T   
Sbjct: 131 VECIDKWLVSRSSCPSCRRILTPVRCDRCGH----ASTAEMKDQAHRHQHHQHSSTTIPT 185

[Close]

BLAST of Lcy08g004590 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.2e-22
Identity = 70/191 (36.65%), Postives = 90/191 (47.12%), Query Frame = 0


Query: 16  SVSAPPPEAVRAGVQLRSDSRGAALCPNL------------YGRAHSGGGAATANQA-SA 75
           + S PPPE + A          A LC  +            + R  +G   A   +A   
Sbjct: 10  TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69

Query: 76  NRGLKKKILQSLLKFTYKTSGSG------------GEGKFAAECAICLAEFVEGEEIRQL 135
           N+GLKKK LQ+L K TY  S S             G+G  + ECAIC+ EF EGEEIR L
Sbjct: 70  NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129

Query: 136 PQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDN 182
           P C H FHV+C+D WL S SSCPSCR+ILV  +  + G   +       D+  H +    
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTAETQVKDQPPHHQHPSQ 189

[Close]

BLAST of Lcy08g004590 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-18
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 54  AATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQC 113
           +A A   +   GLKK+    L KF     GSG     A ECAICL EF +GE +R LP C
Sbjct: 68  SAAAGTVADRAGLKKR---ELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPC 127

Query: 114 GHCFHVSCVDTWLGSHSSCPSCRQILV 141
            H FH+SC+DTWL SHSSCP+CR  L+
Sbjct: 128 NHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of Lcy08g004590 vs. ExPASy TrEMBL
Match: A0A6J1F5B4 (RING-H2 finger protein ATL8 OS=Cucurbita moschata OX=3662 GN=LOC111440980 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.1e-61
Identity = 137/200 (68.50%), Postives = 146/200 (73.00%), Query Frame = 0


Query: 1   MTSYFTTLAANTSS--ASVSAPPPEAVRAGVQLRSD---SRGAALCPNL----------- 60
           MT YF  LA NTSS  A+ +APPPEA    V + SD      A LC  +           
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEA----VAMESDFVVILAALLCALICMVGLIAVARC 60

Query: 61  --YGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFV 120
               R  +GGGA   NQASANRGLKKKILQSL KF Y+ SGSGGE KFAAECAICLAEF+
Sbjct: 61  AWLRRGSNGGGA--GNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFL 120

Query: 121 EGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGH-DE 180
           +GEEIRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G+FPAVVHGG H DE
Sbjct: 121 DGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNDE 180

Query: 181 EEHKRREDNNANNTGLGFLP 182
           EE KRREDNN NN GLGFLP
Sbjct: 181 EEQKRREDNNGNNRGLGFLP 194

[Close]

BLAST of Lcy08g004590 vs. ExPASy TrEMBL
Match: A0A6J1I6T7 (RING-H2 finger protein ATL8 OS=Cucurbita maxima OX=3661 GN=LOC111470152 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 135/200 (67.50%), Postives = 144/200 (72.00%), Query Frame = 0


Query: 1   MTSYFTTLAANTSS--ASVSAPPPEAVRAGVQLRSD---SRGAALCPNL----------- 60
           MT Y   LA NTSS  A+ +APPPEA    V + SD      A LC  +           
Sbjct: 41  MTRYLQALAGNTSSATATATAPPPEA----VAIESDFVVILAALLCALICMVGLIAVARC 100

Query: 61  --YGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFV 120
               R  +GGGA   NQASANRGLKKKILQSL KF Y+ SGSGGEGKFAAECAICLAEF+
Sbjct: 101 AWLRRGSNGGGA--GNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFL 160

Query: 121 EGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGH-DE 180
           +GEEIRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G FPAVVHG  H +E
Sbjct: 161 DGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNE 220

Query: 181 EEHKRREDNNANNTGLGFLP 182
           EE KRREDNN NN GLGFLP
Sbjct: 221 EEQKRREDNNGNNRGLGFLP 234

[Close]

BLAST of Lcy08g004590 vs. ExPASy TrEMBL
Match: A0A5D3CJ22 (RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00120 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.3e-50
Identity = 122/189 (64.55%), Postives = 130/189 (68.78%), Query Frame = 0


Query: 1   MTSYFTTLAANTSSASVSAPPPEAVRAGVQLRSD---SRGAALCP-----NLYGRAHSGG 60
           M+ Y   L ANTS    SAPPPEA    V L SD      A LC       L   A    
Sbjct: 1   MSPYIRALTANTS----SAPPPEA----VALESDFVVILAALLCALICMVGLIAVARC-A 60

Query: 61  GAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQ 120
                NQASANRGLKKKILQSL KF YK+  + G+GK AAECAICLAEF+EGEEIRQLPQ
Sbjct: 61  WLRRGNQASANRGLKKKILQSLPKFRYKS--TVGDGKIAAECAICLAEFLEGEEIRQLPQ 120

Query: 121 CGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNA 180
           CGHCFHVSCVDTWLG+HSSCPSCRQILVVAR QK GQFPAVV GG  D  E +  EDNN 
Sbjct: 121 CGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEVEDNNN 178

Query: 181 NNTGLGFLP 182
           +N GLGFLP
Sbjct: 181 DNRGLGFLP 178

[Close]

BLAST of Lcy08g004590 vs. ExPASy TrEMBL
Match: A0A1S3BKT0 (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103491102 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.3e-50
Identity = 122/189 (64.55%), Postives = 130/189 (68.78%), Query Frame = 0


Query: 1   MTSYFTTLAANTSSASVSAPPPEAVRAGVQLRSD---SRGAALCP-----NLYGRAHSGG 60
           M+ Y   L ANTS    SAPPPEA    V L SD      A LC       L   A    
Sbjct: 1   MSPYIRALTANTS----SAPPPEA----VALESDFVVILAALLCALICMVGLIAVARC-A 60

Query: 61  GAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQ 120
                NQASANRGLKKKILQSL KF YK+  + G+GK AAECAICLAEF+EGEEIRQLPQ
Sbjct: 61  WLRRGNQASANRGLKKKILQSLPKFRYKS--TVGDGKIAAECAICLAEFLEGEEIRQLPQ 120

Query: 121 CGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNA 180
           CGHCFHVSCVDTWLG+HSSCPSCRQILVVAR QK GQFPAVV GG  D  E +  EDNN 
Sbjct: 121 CGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEVEDNNN 178

Query: 181 NNTGLGFLP 182
           +N GLGFLP
Sbjct: 181 DNRGLGFLP 178

[Close]

BLAST of Lcy08g004590 vs. ExPASy TrEMBL
Match: A0A0A0L622 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G000150 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.1e-48
Identity = 122/192 (63.54%), Postives = 132/192 (68.75%), Query Frame = 0


Query: 1   MTSYFTTLAANTSSASVSAPPPEAVRAGVQLRSD---SRGAALCP-----NLYGRAHSGG 60
           M+ Y   L ANTS    SAPPPEA    V L SD      A LC       L   A    
Sbjct: 1   MSPYIRALTANTS----SAPPPEA----VALESDFVVILAALLCALICMVGLIAVARC-A 60

Query: 61  GAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQ 120
                NQASANRGLKKKILQSL KF YK+  + G+GK AAECAICLAEF+EGEEIRQLPQ
Sbjct: 61  WLRRGNQASANRGLKKKILQSLPKFRYKS--TVGDGKIAAECAICLAEFLEGEEIRQLPQ 120

Query: 121 CGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGG---HDEEEHKRRED 180
           CGHCFHVSCVDTWLG+HSSCPSCRQILVVAR QK GQFPA V GGG   ++EEE +   +
Sbjct: 121 CGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNIN 180

Query: 181 NNANNTGLGFLP 182
           NN NN GLGFLP
Sbjct: 181 NNNNNRGLGFLP 181

[Close]

BLAST of Lcy08g004590 vs. NCBI nr
Match: XP_023539225.1 (RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 8.7e-61
Identity = 137/200 (68.50%), Postives = 147/200 (73.50%), Query Frame = 0


Query: 1   MTSYFTTLAANTSS--ASVSAPPPEAVRAGVQLRSD---SRGAALCPNL----------- 60
           MT YF  LA NTSS  A+ +APPPEA    V + SD      A LC  +           
Sbjct: 41  MTRYFQALAGNTSSATATATAPPPEA----VAIESDFVVILAALLCALICMVGLIAVARC 100

Query: 61  --YGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFV 120
               R  + GGA   NQASANRGLKKKILQSL KFTY+ SGSGGEGKFAAECAICLAEF+
Sbjct: 101 AWLRRGSNSGGA--GNQASANRGLKKKILQSLPKFTYRASGSGGEGKFAAECAICLAEFL 160

Query: 121 EGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGH-DE 180
           +GEEIRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G+FPAVVHGG H +E
Sbjct: 161 DGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNNE 220

Query: 181 EEHKRREDNNANNTGLGFLP 182
           EE KRREDNN NN GLGFLP
Sbjct: 221 EEQKRREDNNGNNRGLGFLP 234

[Close]

BLAST of Lcy08g004590 vs. NCBI nr
Match: XP_022933605.1 (RING-H2 finger protein ATL8 [Cucurbita moschata])

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-60
Identity = 137/200 (68.50%), Postives = 146/200 (73.00%), Query Frame = 0


Query: 1   MTSYFTTLAANTSS--ASVSAPPPEAVRAGVQLRSD---SRGAALCPNL----------- 60
           MT YF  LA NTSS  A+ +APPPEA    V + SD      A LC  +           
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEA----VAMESDFVVILAALLCALICMVGLIAVARC 60

Query: 61  --YGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFV 120
               R  +GGGA   NQASANRGLKKKILQSL KF Y+ SGSGGE KFAAECAICLAEF+
Sbjct: 61  AWLRRGSNGGGA--GNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFL 120

Query: 121 EGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGH-DE 180
           +GEEIRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G+FPAVVHGG H DE
Sbjct: 121 DGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNDE 180

Query: 181 EEHKRREDNNANNTGLGFLP 182
           EE KRREDNN NN GLGFLP
Sbjct: 181 EEQKRREDNNGNNRGLGFLP 194

[Close]

BLAST of Lcy08g004590 vs. NCBI nr
Match: KAG6596287.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.5 bits (615), Expect = 5.6e-60
Identity = 136/200 (68.00%), Postives = 146/200 (73.00%), Query Frame = 0


Query: 1   MTSYFTTLAANTSS--ASVSAPPPEAVRAGVQLRSD---SRGAALCPNL----------- 60
           MT YF  LA NTSS  A+ +APPPEA    V + SD      A LC  +           
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEA----VAMESDFVVILAALLCALICMVGLIAVARC 60

Query: 61  --YGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFV 120
               R  +GGGA   NQASANRGLKKKILQSL KF Y+ SGSGGE KFAAECAICLAEF+
Sbjct: 61  AWLRRGSNGGGA--GNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFL 120

Query: 121 EGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHD-E 180
           +GEEIRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G+FPAVVHGG H+ E
Sbjct: 121 DGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNTE 180

Query: 181 EEHKRREDNNANNTGLGFLP 182
           EE KRREDNN NN GLGFLP
Sbjct: 181 EEQKRREDNNGNNRGLGFLP 194

[Close]

BLAST of Lcy08g004590 vs. NCBI nr
Match: XP_022971423.1 (RING-H2 finger protein ATL8 [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-59
Identity = 135/200 (67.50%), Postives = 144/200 (72.00%), Query Frame = 0


Query: 1   MTSYFTTLAANTSS--ASVSAPPPEAVRAGVQLRSD---SRGAALCPNL----------- 60
           MT Y   LA NTSS  A+ +APPPEA    V + SD      A LC  +           
Sbjct: 41  MTRYLQALAGNTSSATATATAPPPEA----VAIESDFVVILAALLCALICMVGLIAVARC 100

Query: 61  --YGRAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFV 120
               R  +GGGA   NQASANRGLKKKILQSL KF Y+ SGSGGEGKFAAECAICLAEF+
Sbjct: 101 AWLRRGSNGGGA--GNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFL 160

Query: 121 EGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGH-DE 180
           +GEEIRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G FPAVVHG  H +E
Sbjct: 161 DGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNE 220

Query: 181 EEHKRREDNNANNTGLGFLP 182
           EE KRREDNN NN GLGFLP
Sbjct: 221 EEQKRREDNNGNNRGLGFLP 234

[Close]

BLAST of Lcy08g004590 vs. NCBI nr
Match: KAG7027836.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-56
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 47  RAHSGGGAATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEE 106
           R ++GGGA   NQASANRGLKKKILQSL KF Y+ SGSGGE KFAAECAICLAEF++GEE
Sbjct: 33  RGNNGGGA--GNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEE 92

Query: 107 IRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHD-EEEHK 166
           IRQLPQCGHCFHVSCVDTWL SHSSCPSCRQILVVAR QK G+FPAVVHGG H+ EEE K
Sbjct: 93  IRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNTEEEQK 152

Query: 167 RREDNNANNTGLGFLP 182
           RREDNN NN GLGFLP
Sbjct: 153 RREDNNGNNRGLGFLP 166

[Close]

BLAST of Lcy08g004590 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 4.5e-31
Identity = 66/114 (57.89%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 60  ASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHV 119
           A+AN+GLKKK+L+SL K TY       E     ECAICL EF  G+E+R LPQCGH FHV
Sbjct: 72  AAANKGLKKKVLRSLPKLTYSPDSPPAEK--LVECAICLTEFAAGDELRVLPQCGHGFHV 131

Query: 120 SCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNAN 174
           SC+DTWLGSHSSCPSCRQILVV R  K G  P     G   +   K+RED   N
Sbjct: 132 SCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of Lcy08g004590 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 7.6e-31
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 60  ASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHV 119
           A+AN+GLKKK+LQSL K T+  S    E +  AECAICLAEF  G+E+R LPQCGH FHV
Sbjct: 79  AAANKGLKKKVLQSLPKLTF--SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHV 138

Query: 120 SCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNANNTGLGF 179
           +C+DTWLGSHSSCPSCRQILVVAR  K G  P     G   E E + R     ++    F
Sbjct: 139 ACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRIKQGEDDPN-SF 197

Query: 180 LP 182
           LP
Sbjct: 199 LP 197

[Close]

BLAST of Lcy08g004590 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-23
Identity = 69/183 (37.70%), Postives = 93/183 (50.82%), Query Frame = 0


Query: 18  SAPPPEAVRAGVQLRSDS---RGAALCPNL------------YGRAHSGGGAATANQASA 77
           +APPP+     +   SD      A LC  +            + R  + GG    +  S 
Sbjct: 11  AAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGG----DSPSP 70

Query: 78  NRGLKKKILQSLLKFTY----KTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFH 137
           N+GLKKK LQSL + T+     TSG+  E   + ECAICL +F +GEEIR LP CGH FH
Sbjct: 71  NKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 130

Query: 138 VSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDNNANNTGLG 182
           V C+D WL S SSCPSCR+IL   R  + G            ++ H+ +   +++ T   
Sbjct: 131 VECIDKWLVSRSSCPSCRRILTPVRCDRCGH----ASTAEMKDQAHRHQHHQHSSTTIPT 185

[Close]

BLAST of Lcy08g004590 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-23
Identity = 70/191 (36.65%), Postives = 90/191 (47.12%), Query Frame = 0


Query: 16  SVSAPPPEAVRAGVQLRSDSRGAALCPNL------------YGRAHSGGGAATANQA-SA 75
           + S PPPE + A          A LC  +            + R  +G   A   +A   
Sbjct: 10  TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69

Query: 76  NRGLKKKILQSLLKFTYKTSGSG------------GEGKFAAECAICLAEFVEGEEIRQL 135
           N+GLKKK LQ+L K TY  S S             G+G  + ECAIC+ EF EGEEIR L
Sbjct: 70  NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129

Query: 136 PQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARFQKRGQFPAVVHGGGHDEEEHKRREDN 182
           P C H FHV+C+D WL S SSCPSCR+ILV  +  + G   +       D+  H +    
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTAETQVKDQPPHHQHPSQ 189

[Close]

BLAST of Lcy08g004590 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 54  AATANQASANRGLKKKILQSLLKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQC 113
           +A A   +   GLKK+    L KF     GSG     A ECAICL EF +GE +R LP C
Sbjct: 68  SAAAGTVADRAGLKKR---ELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPC 127

Query: 114 GHCFHVSCVDTWLGSHSSCPSCRQILV 141
            H FH+SC+DTWL SHSSCP+CR  L+
Sbjct: 128 NHSFHMSCIDTWLVSHSSCPNCRHSLI 151

The following BLAST results are available for this feature:

BLAST of Lcy08g004590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LC69	6.3e-30	57.89	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
Q9LM69	1.1e-29	57.38	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
O22755	2.8e-22	37.70	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9ZT49	8.2e-22	36.65	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LZV8	2.5e-18	51.72	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of Lcy08g004590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5B4	7.1e-61	68.50	RING-H2 finger protein ATL8 OS=Cucurbita moschata OX=3662 GN=LOC111440980 PE=4 S...	[more]
A0A6J1I6T7	1.8e-59	67.50	RING-H2 finger protein ATL8 OS=Cucurbita maxima OX=3661 GN=LOC111470152 PE=4 SV=...	[more]
A0A5D3CJ22	4.3e-50	64.55	RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BKT0	4.3e-50	64.55	RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103491102 PE=4 SV=1	[more]
A0A0A0L622	3.1e-48	63.54	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G000150 P...	[more]

BLAST of Lcy08g004590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539225.1	8.7e-61	68.50	RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo]	[more]
XP_022933605.1	1.5e-60	68.50	RING-H2 finger protein ATL8 [Cucurbita moschata]	[more]
KAG6596287.1	5.6e-60	68.00	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022971423.1	3.6e-59	67.50	RING-H2 finger protein ATL8 [Cucurbita maxima]	[more]
KAG7027836.1	2.9e-56	83.09	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Lcy08g004590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76410.1	4.5e-31	57.89	RING/U-box superfamily protein	[more]
AT1G20823.1	7.6e-31	57.38	RING/U-box superfamily protein	[more]
AT2G17450.1	2.0e-23	37.70	RING-H2 finger A3A	[more]
AT4G35480.1	5.8e-23	36.65	RING-H2 finger A3B	[more]
AT5G01880.1	1.8e-19	51.72	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM01197	FANCL_C_2	coord: 90..145 e-value: 0.0026 score: 3.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..171
None	No IPR available	PANTHER	PTHR45798:SF61	E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED	coord: 41..167
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 41..167
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..142
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..135 e-value: 1.4E-5 score: 34.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 93..136 e-value: 2.2E-14 score: 53.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 94..136 score: 12.371254
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 52..140 e-value: 6.0E-23 score: 82.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g004590.1	Lcy08g004590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane