Lcy08g004440 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTCAATCCCCGGCATAATTCATCGAAATCTCAACAAGAAATCTCATCGATCCATTTTTATAAATTCAACCAAATCAAACCATACATTTCCATACCTTTCTTCCTCCGATCTGTACTGTGTACTGTATCAGCTTCCATCGCTTCCATGGCTATGGCAGCTTCCACTACTTTCAAGCATTTCTTCTTCTTCTTCTTCCTCCTCCTCACTTTCTCCTCCCTCCAAATCGAAGCCCGAGTCAACAAATTCTTCAGCAAATTCATCCACACCGATCAGACTGTTGTTCTTCCGGTTCCCCCTTCCCTGGCGCCGGTCTCTGCTCCGCCGGAGTTATCTCCTTCTCTGGCGCCGACGCCGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTGTACGGACGCGATTCCGATGACGGCGAGAGTAGCCGGACGATCACCGACGTGGAGGAGGAGATTCTCGCGGAGGACGGCGAGGAGAGCTACAAATCTGGCTATCCGAAGACGAATTTACACAGCGACAGTTTCGGAAGCCCTAGTAGATACGAGCAGTACCAGAGCAATTACGGGAACAAGTACGAGAACAATGGATATAGAAATTCCGAGTACGAGAACAATCAGTACAGAAATTCGGAGCACGAGAGCAATTTTGAGAACAATGGCGGGAGAAATTACCAGTACCAGAGCAATTTCGAGGACAACGGCTACAGAAGGAGCCGATTCGAACCGACGGAGCGGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGGAGGTACTATCACGACATTAACTCGGGGAATGGAGGAGAAGGCGAATCGTACGGAAGCAAGAAGAATCCCTACGAGTTCGATACAATGGAGGAGTATGAGAAGAGCGAGGGATTTCTTCCTTGATGCAGAGAGGGATGGATTTCTAGGGTTTAACTTGAACTTGATCTCGATCTCGAACCCCTAAATTATGGAGGTTTTTGTTTCTGTGTGTGTGATTTTGATTTTTGGTGCTTTTATCTTTGAGTTGTGATTGTTTTTGCACAACTTGAATGAATGTTTTGGGCTTGAATTTTATGTGTTCTTGAATGTAGAAAAATGATACAGGAAAAATGGTGTTTCCATTTTGGAAATAAATTCCAGAATGAGATTTTAGATTCAATATCAGATCTGTGTGTTTTTGAGTTCAATTGTTGAAAAGATCCATAAATTATGATCAGTACAAAAGTTCATATGAATGAAATTCTGAGACGAATTTGAATTTA CCTCAATCCCCGGCATAATTCATCGAAATCTCAACAAGAAATCTCATCGATCCATTTTTATAAATTCAACCAAATCAAACCATACATTTCCATACCTTTCTTCCTCCGATCTGTACTGTGTACTGTATCAGCTTCCATCGCTTCCATGGCTATGGCAGCTTCCACTACTTTCAAGCATTTCTTCTTCTTCTTCTTCCTCCTCCTCACTTTCTCCTCCCTCCAAATCGAAGCCCGAGTCAACAAATTCTTCAGCAAATTCATCCACACCGATCAGACTGTTGTTCTTCCGGTTCCCCCTTCCCTGGCGCCGGTCTCTGCTCCGCCGGAGTTATCTCCTTCTCTGGCGCCGACGCCGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTGTACGGACGCGATTCCGATGACGGCGAGAGTAGCCGGACGATCACCGACGTGGAGGAGGAGATTCTCGCGGAGGACGGCGAGGAGAGCTACAAATCTGGCTATCCGAAGACGAATTTACACAGCGACAGTTTCGGAAGCCCTAGTAGATACGAGCAGTACCAGAGCAATTACGGGAACAAGTACGAGAACAATGGATATAGAAATTCCGAGTACGAGAACAATCAGTACAGAAATTCGGAGCACGAGAGCAATTTTGAGAACAATGGCGGGAGAAATTACCAGTACCAGAGCAATTTCGAGGACAACGGCTACAGAAGGAGCCGATTCGAACCGACGGAGCGGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGGAGGTACTATCACGACATTAACTCGGGGAATGGAGGAGAAGGCGAATCGTACGGAAGCAAGAAGAATCCCTACGAGTTCGATACAATGGAGGAGTATGAGAAGAGCGAGGGATTTCTTCCTTGATGCAGAGAGGGATGGATTTCTAGGGTTTAACTTGAACTTGATCTCGATCTCGAACCCCTAAATTATGGAGGTTTTTGTTTCTGTGTGTGTGATTTTGATTTTTGGTGCTTTTATCTTTGAGTTGTGATTGTTTTTGCACAACTTGAATGAATGTTTTGGGCTTGAATTTTATGTGTTCTTGAATGTAGAAAAATGATACAGGAAAAATGGTGTTTCCATTTTGGAAATAAATTCCAGAATGAGATTTTAGATTCAATATCAGATCTGTGTGTTTTTGAGTTCAATTGTTGAAAAGATCCATAAATTATGATCAGTACAAAAGTTCATATGAATGAAATTCTGAGACGAATTTGAATTTA ATGGCTATGGCAGCTTCCACTACTTTCAAGCATTTCTTCTTCTTCTTCTTCCTCCTCCTCACTTTCTCCTCCCTCCAAATCGAAGCCCGAGTCAACAAATTCTTCAGCAAATTCATCCACACCGATCAGACTGTTGTTCTTCCGGTTCCCCCTTCCCTGGCGCCGGTCTCTGCTCCGCCGGAGTTATCTCCTTCTCTGGCGCCGACGCCGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTGTACGGACGCGATTCCGATGACGGCGAGAGTAGCCGGACGATCACCGACGTGGAGGAGGAGATTCTCGCGGAGGACGGCGAGGAGAGCTACAAATCTGGCTATCCGAAGACGAATTTACACAGCGACAGTTTCGGAAGCCCTAGTAGATACGAGCAGTACCAGAGCAATTACGGGAACAAGTACGAGAACAATGGATATAGAAATTCCGAGTACGAGAACAATCAGTACAGAAATTCGGAGCACGAGAGCAATTTTGAGAACAATGGCGGGAGAAATTACCAGTACCAGAGCAATTTCGAGGACAACGGCTACAGAAGGAGCCGATTCGAACCGACGGAGCGGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGGAGGTACTATCACGACATTAACTCGGGGAATGGAGGAGAAGGCGAATCGTACGGAAGCAAGAAGAATCCCTACGAGTTCGATACAATGGAGGAGTATGAGAAGAGCGAGGGATTTCTTCCTTGA MAMAASTTFKHFFFFFFLLLTFSSLQIEARVNKFFSKFIHTDQTVVLPVPPSLAPVSAPPELSPSLAPTPAPAPFFDESQNAYGLYGRDSDDGESSRTITDVEEEILAEDGEESYKSGYPKTNLHSDSFGSPSRYEQYQSNYGNKYENNGYRNSEYENNQYRNSEHESNFENNGGRNYQYQSNFEDNGYRRSRFEPTERQGMSDTRFMENGRYYHDINSGNGGEGESYGSKKNPYEFDTMEEYEKSEGFLP Homology
BLAST of Lcy08g004440 vs. ExPASy TrEMBL
Match: A0A6J1HVL6 (probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 3.7e-84 Identity = 195/282 (69.15%), Postives = 221/282 (78.37%), Query Frame = 0
BLAST of Lcy08g004440 vs. ExPASy TrEMBL
Match: A0A6J1HX03 (protein E6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 2.3e-78 Identity = 198/336 (58.93%), Postives = 221/336 (65.77%), Query Frame = 0
BLAST of Lcy08g004440 vs. ExPASy TrEMBL
Match: A0A6J1GLC8 (GATA zinc finger domain-containing protein 14-like OS=Cucurbita moschata OX=3662 GN=LOC111455418 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 3.3e-72 Identity = 195/381 (51.18%), Postives = 220/381 (57.74%), Query Frame = 0
BLAST of Lcy08g004440 vs. ExPASy TrEMBL
Match: A0A6J1C3G6 (protein E6-like OS=Momordica charantia OX=3673 GN=LOC111007909 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 7.3e-72 Identity = 169/255 (66.27%), Postives = 189/255 (74.12%), Query Frame = 0
BLAST of Lcy08g004440 vs. ExPASy TrEMBL
Match: A0A5D3DDN1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00230 PE=4 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 3.1e-70 Identity = 171/256 (66.80%), Postives = 189/256 (73.83%), Query Frame = 0
BLAST of Lcy08g004440 vs. NCBI nr
Match: XP_022969172.1 (probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima]) HSP 1 Score: 321.2 bits (822), Expect = 7.7e-84 Identity = 195/282 (69.15%), Postives = 221/282 (78.37%), Query Frame = 0
BLAST of Lcy08g004440 vs. NCBI nr
Match: XP_022969171.1 (protein E6-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 302.0 bits (772), Expect = 4.8e-78 Identity = 198/336 (58.93%), Postives = 221/336 (65.77%), Query Frame = 0
BLAST of Lcy08g004440 vs. NCBI nr
Match: XP_023554545.1 (GATA zinc finger domain-containing protein 14-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 300.1 bits (767), Expect = 1.8e-77 Identity = 197/337 (58.46%), Postives = 220/337 (65.28%), Query Frame = 0
BLAST of Lcy08g004440 vs. NCBI nr
Match: XP_038886989.1 (protein E6-like [Benincasa hispida]) HSP 1 Score: 297.0 bits (759), Expect = 1.6e-76 Identity = 176/255 (69.02%), Postives = 203/255 (79.61%), Query Frame = 0
BLAST of Lcy08g004440 vs. NCBI nr
Match: KAG6572262.1 (hypothetical protein SDJN03_28990, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 294.3 bits (752), Expect = 1.0e-75 Identity = 192/337 (56.97%), Postives = 217/337 (64.39%), Query Frame = 0
BLAST of Lcy08g004440 vs. TAIR 10
Match: AT1G03820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.4e-06 Identity = 72/246 (29.27%), Postives = 94/246 (38.21%), Query Frame = 0
BLAST of Lcy08g004440 vs. TAIR 10
Match: AT2G33850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06 Identity = 75/271 (27.68%), Postives = 111/271 (40.96%), Query Frame = 0
BLAST of Lcy08g004440 vs. TAIR 10
Match: AT1G28400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 3.4e-05 Identity = 83/289 (28.72%), Postives = 114/289 (39.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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