Lcy08g003780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g003780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr08: 5077943 .. 5082134 (+)
RNA-Seq Expression	Lcy08g003780
Synteny	Lcy08g003780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAAATCGATTCAGGCAGGAAGAGAAATCGTGGACGAAGAAGAGTAGGGGTGGGACTTCGCCGGAGACAGATATCGAACGATGAGTTTCTTAGCAACTCCTCCGTCGCCGACGATTCTCAGTCCGCCGGACATGTTACTGAGCTCTGGCGGGAAAGCATCTTGCCTGCGACTAGGTAGGGCGGTGGAATATCGGAGAGTGACAATGAGAGGCGGAAGTGAGAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAACGAGCCAAGAAAGATTCACAACAATTGGATCGAGTGTATGATTCCAAAATTAAGCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATGCCTCATTTGTATCTTTGATTGATTAGTTATCCGAATTATTCGATATTGCACGATCGGTATCGATTTTTAGAAGTATCCACAGTAATAGCGAGATATAGATTTTGACTTATTGTAAATTCCTTCTATATTCCTAGCTGATATTCTGGATTGCTACTGTCGATTTCTGAGACTTAGGTTTTCGAAGATGTTAGAAAGGAACACTGGTACAAGCCTCAGGTTTCATTGTATGCTGATATTATCACATTATTGGCTAGCAATGGATTGTTTGAACAAGTGCAAATTATTCATTCCTACTTGAAAGCAGAAACTGATTTAGCGCCTGAAATTGACGGGTTTAACGCTCTTTTGAGGGCTTTGGTGAGTTACAAGTTAGGTGAACTTGCGATGGAGTCCTATTACTTGATGAAAGAAGTAGGTTGCGAGCCAGATAAGACTTCTTTCAGGATAGTCATAAAAGGATTGGACGCAACGGGAGAAGCAGCTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGATTTATGGTGAATCACTCGAGTTTCTCGAGGAAGAAAACGAGGCAGCTACAGCCGTACCGACGCACTGAGCTGCAGAATCTGGATTTGAATCATGGAAGAGAAGGCATATACAGATCAAACTTTTGGCTGGATGGAATTTATCGGTGTTTCCTTTGAAGAAACCTGAAAAGACCAGGAAATTTACTTTGGACACGAACTTTAACTATGTACTGGCTTAAGTCTACCCGTGCATAGCAGTGTATCTCTGTGATAACTTTGAGATCATGTTTGAGTTTGACTGGATAAATGACACTAGTAGGAGCTTGTGAATATTGGATGAATTGTATCAGTGTACTCTTCTCCTTGTTCTTTTGCTTCGGTTTCTCAAGCTGCAGGGATCCAAAAACTTCCCTGCCCTGCTTGGCACTGTCACTAGTCTACGCAGAGAGAGAACTGATCATCCTGCAACATACTTTATCTCTTCTATCGTGAGCATGAGAAGTTCATCTAAGTCCACCCAAGATAGAAATACGAGGAAAAAGGCTGGACTATAATTAAAGGTGAATGATTCATGATTTCTTTTTCCACCCAAAGGGTACTGAATTATATGTAGAATACATGAGGACAAAACCGCGTTTGGTAATTCTGCATTGTCTTTGTAAAAATATATATAGTAAAAATGAAAACTATGTGGGCTTTATGCCCAGACTGCTAATTTTGTGCAGCCGGATTCTGATGTATGTTTACACATCAAGAGTGATATAACATGCCAGTGTACTTATGTTCAAGTTTCTAGTTACATTTCATAATGAAGGCCTAAAGTTTTGATTTAGATTCCTTAGTTGCGTAAGGATGTCAAAATTGTTTCCCTTCAAATGTCTGCCCGAACTGCCAGTTTCCAGGTGCAACACCATAGGAAGTAAGTGCTCTTCCACTGCTAGAGGTAACTTCGAAAGAGAGAGGTTGCCCAAGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTCCTCGCCAGTGGTATCCACCCTGTTCTTGATCCCTTCACTTTCACTGCCAATAGTTCACCATCCATTCCAACATTAGTAATCAGAACTTGAAAGAAGCGAGAATTCCCACTGACTGTGAACCTCAATCCACCACTTCTGTCACACCTCACCCTACACAAATTTTAAACAAGTTTTTCCCCTCAGCCAAGGATGACGAAATGTTCAAATCTATATGCATTTAGATTGATTTTACCTCCTATATTGAACTGGTACAATATCTGCTTTTTTCTCTGCTATTTCAGCAAATGCTGCCTCTGACATCTCAAAGTGTTCTTTGGGAAAATTGCACCACCCACCATAATCAGAAGATAAGCCATAATTGGGAGGGCAGAAGTCGGTGGCGGTTAGAATGACGGTTGGGCTTCCTTGCAAGCACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGGTACTCCCTCTACTAAACAACATGCTACTCAGTCCAGCACTATATTTCCCATAGCTAATCTTATGCAGATCTCCATAACCACAAGCACCTTCTGCAACATTAGTAAAAAAAAGCACTTCAAACACTAATTTTCCCCCCTTTTGGCTACAAAATTCCAGACATGGTTAAACAGGATCATCAAAGTCACTATTTTCAGTCTCCACCTTCAAAAGGTGGAGAAGAGATGCCTTCAACACACTCAAATAGTAACTAGGAGAAAAAAAGCTTGTGCAAACCCAGAAAAGCACCATGTTTAAACACTAATGTAACTTCATGAGTTTTCAGATGAAGGAAAAGAGTACCTGTAATTATAGACCCATCTGTTTCTTTGGAGTATGTTGCAGTTGCAGATTTCCACTCTTCATCCTTAGCCGCAAAAATGCCGGGCGTTGGCCAAAGAACGAAGTAGACTATGATAGCTACAAAGGCAGCCATTTCAGAAGCCTGTGTGTACTCAAAATGAGGTATATTTCCTTCAAGAAAAGCCCCTCCCTGCCTTCTTTTTCAGAATTCCCCTAATTTGTCGCGGAAATGAAGTAAGCTTCTCTGATTGCCGGAGCACTGTTCTGAAAATAGAAAAACTTTGACAAATCTCCAGAATCATAGCCCTTCGTTCACATTGGTGGGGCGTTTAACGAGGCAAAGGAAAAGACACACGCATTGTTTACGATCAGCCTCCTCCTGTTCTTATCTTCTTGTCCGCCGATAATGGGGGCTCAAAGAAGCAAACTTGGAGCCTCCATTTTTGCAGTTATCGAGGTAGAAGGGTTTGAAGCTTTATGTTGATGGCGGCAGATACAGAGCGGAAAGCCATAGAAACAGGTATGTGTTCCTTTATATATATATATTTATTTATTTATTTAAGATCCCTTGAACAAAAGAATTAAAGAAGCAGAAGCTCTTAATGAGAACCCAAAACAAAAGTGTCAAGTGGCTTATTTTGGCTTTGATTGTTGGACCCGAATGAGTTTTAAAAAAGAGTGGCTTTTGGTTTTATGGCTCATCTTTTCATAACAAAAAAGGTAGTGGGTGGGTCCTAGAGTTGGAAGACGTGGATTGCCGGGTAATGAAGCCGTTCTCTTGGCGGGAAACGGTGCTGGATGACTTTTTGGTCTTTAGATTTTTTTTTTTTTTTTTTTTGGGTTAAATTATCGAAAATATCACTGAAATATCGTGTTGGTTTTGAAATATACTCCCAAACTTTCGAAAGTTTGAATTTTGTTTACAAACGACCCTTGAAGGCATTTTCATCGTTAAATTTATGGATGGAAAATGACATGTTTGAATATGTATTGTTGCTTATATGAACATATTTGAACATATACATGGAAAAAACCATAAGTTTTCATGCATAAATTTATTGAAAAATGTCTCAAATGGTCATTTTGAAACAAAATTCAAATTTCGAGGGCTAAAATGAAACTTTTGAAAGTTTAGGATATAATTGGGTTCAGGGGTATTTTTGACAATTTAATGATTTTTTTTTTTTCTTTTGGGTACATGAAATTCGTTTGGGTTAAATTACACTTTTGGTATTTAATTATAGTTTTGGTCAAGTTTTTATTTGTATTCCTTTTTTTTTTAGTTCAACAACTTTTAAGGGTGGAGAATTTGAACCTTTGACCACATGATTGAAGACACCACTGCGTTGAACTTATTTTGACAATTTTTATTTGGTTCTTATTATTTGGGTTTAGCATCAATTTGGTTTAAAGTATTACTACCCATGGTTTGGTTAAACCTCCTAAGTAATCCATAATAA

mRNA sequence

TCAAAATCGATTCAGGCAGGAAGAGAAATCGTGGACGAAGAAGAGTAGGGGTGGGACTTCGCCGGAGACAGATATCGAACGATGAGTTTCTTAGCAACTCCTCCGTCGCCGACGATTCTCAGTCCGCCGGACATGTTACTGAGCTCTGGCGGGAAAGCATCTTGCCTGCGACTAGGTAGGGCGGTGGAATATCGGAGAGTGACAATGAGAGGCGGAAGTGAGAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAACGAGCCAAGAAAGATTCACAACAATTGGATCGAGTGTATGATTCCAAAATTAAGCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAAGGAACACTGGTACAAGCCTCAGGTTTCATTGTATGCTGATATTATCACATTATTGGCTAGCAATGGATTGTTTGAACAAGTGCAAATTATTCATTCCTACTTGAAAGCAGAAACTGATTTAGCGCCTGAAATTGACGGGTTTAACGCTCTTTTGAGGGCTTTGGTGAGTTACAAGTTAGGTGAACTTGCGATGGAGTCCTATTACTTGATGAAAGAAGTAGGTTGCGAGCCAGATAAGACTTCTTTCAGGATAGTCATAAAAGGATTGGACGCAACGGGAGAAGCAGCTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGATTTATGGTGAATCACTCGAGTTTCTCGAGGAAGAAAACGAGGCAGCTACAGCCGTACCGACGCACTGAGCTGCAGAATCTGGATTTGAATCATGGAAGAGAAGGCATATACAGATCAAACTTTTGGCTGGATGGAATTTATCGGTGTTTCCTTTGAAGAAACCTGAAAAGACCAGGAAATTTACTTTGGACACGAACTTTAACTATGTACTGGCTTAAGTCTACCCGTGCATAGCAGTGTATCTCTGTGATAACTTTGAGATCATGTTTGAGTTTGACTGGATAAATGACACTAGTAGGAGCTTGTGAATATTGGATGAATTGTATCAGTGTACTCTTCTCCTTGTTCTTTTGCTTCGGTTTCTCAAGCTGCAGGGATCCAAAAACTTCCCTGCCCTGCTTGGCACTGTCACTAGTCTACGCAGAGAGAGAACTGATCATCCTGCAACATACTTTATCTCTTCTATCGTGAGCATGAGAAGTTCATCTAAGTCCACCCAAGATAGAAATACGAGGAAAAAGGCTGGACTATAATTAAAGCAAATGCTGCCTCTGACATCTCAAAGTGTTCTTTGGGAAAATTGCACCACCCACCATAATCAGAAGATAAGCCATAATTGGGAGGGCAGAAGTCGGTGGCGGTTAGAATGACGGTTGGGCTTCCTTGCAAGCACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGTTGCAGATTTCCACTCTTCATCCTTAGCCGCAAAAATGCCGGGCGTTGGCCAAAGAACGAAGTAGACTATGATAGCTACAAAGGCAGCCATTTCAGAAGCCTGTGTGTACTCAAAATGAGAATCATAGCCCTTCGTTCACATTGGTGGGGCGTTTAACGAGGCAAAGGAAAAGACACACGCATTGTTTACGATCAGCCTCCTCCTGTTCTTATCTTCTTGTCCGCCGATAATGGGGGCTCAAAGAAGCAAACTTGGAGCCTCCATTTTTGCAGTTATCGAGGTAGAAGGGTTTGAAGCTTTATGTTGATGGCGGCAGATACAGAGCGGAAAGCCATAGAAACAGGTATGTGTTCCTTTATATATATATATTTATTTATTTATTTAAGATCCCTTGAACAAAAGAATTAAAGAAGCAGAAGCTCTTAATGAGAACCCAAAACAAAAGTGTCAAGTGGCTTATTTTGGCTTTGATTGTTGGACCCGAATGAGTTTTAAAAAAGAGTGGCTTTTGGTTTTATGGCTCATCTTTTCATAACAAAAAAGGTAGTGGGTGGGTCCTAGAGTTGGAAGACGTGGATTGCCGGGTAATGAAGCCGTTCTCTTGGCGGGAAACGGTGCTGGATGACTTTTTGGTCTTTAGATTTTTTTTTTTTTTTTTTTTGGGTTAAATTATCGAAAATATCACTGAAATATCGTGTTGGTTTTGAAATATACTCCCAAACTTTCGAAAGTTTGAATTTTGTTTACAAACGACCCTTGAAGGCATTTTCATCGTTAAATTTATGGATGGAAAATGACATGTTTGAATATGTATTGTTGCTTATATGAACATATTTGAACATATACATGGAAAAAACCATAAGTTTTCATGCATAAATTTATTGAAAAATGTCTCAAATGGTCATTTTGAAACAAAATTCAAATTTCGAGGGCTAAAATGAAACTTTTGAAAGTTTAGGATATAATTGGGTTCAGGGGTATTTTTGACAATTTAATGATTTTTTTTTTTTCTTTTGGGTACATGAAATTCGTTTGGGTTAAATTACACTTTTGGTATTTAATTATAGTTTTGGTCAAGTTTTTATTTGTATTCCTTTTTTTTTTAGTTCAACAACTTTTAAGGGTGGAGAATTTGAACCTTTGACCACATGATTGAAGACACCACTGCGTTGAACTTATTTTGACAATTTTTATTTGGTTCTTATTATTTGGGTTTAGCATCAATTTGGTTTAAAGTATTACTACCCATGGTTTGGTTAAACCTCCTAAGTAATCCATAATAA

Coding sequence (CDS)

ATGAGTTTCTTAGCAACTCCTCCGTCGCCGACGATTCTCAGTCCGCCGGACATGTTACTGAGCTCTGGCGGGAAAGCATCTTGCCTGCGACTAGGTAGGGCGGTGGAATATCGGAGAGTGACAATGAGAGGCGGAAGTGAGAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAACGAGCCAAGAAAGATTCACAACAATTGGATCGAGTGTATGATTCCAAAATTAAGCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAAGGAACACTGGTACAAGCCTCAGGTTTCATTGTATGCTGATATTATCACATTATTGGCTAGCAATGGATTGTTTGAACAAGTGCAAATTATTCATTCCTACTTGAAAGCAGAAACTGATTTAGCGCCTGAAATTGACGGGTTTAACGCTCTTTTGAGGGCTTTGGTGAGTTACAAGTTAGGTGAACTTGCGATGGAGTCCTATTACTTGATGAAAGAAGTAGGTTGCGAGCCAGATAAGACTTCTTTCAGGATAGTCATAAAAGGATTGGACGCAACGGGAGAAGCAGCTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGATTTATGGTGAATCACTCGAGTTTCTCGAGGAAGAAAACGAGGCAGCTACAGCCGTACCGACGCACTGA

Protein sequence

MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLGELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEENEAATAVPTH

Homology

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BLAST of Lcy08g003780 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-20
Identity = 57/162 (35.19%), Postives = 95/162 (58.64%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGF 168
            +LA+K+FE ++K+ WY+P V +Y D+I  LA +   ++   +   +K E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLRALVSYKLGELAMESYYLMKEVGCEPDKTSFRIVIKGL 210
             ++R  +       AM  Y  M +    P++  FR+++KGL
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223

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BLAST of Lcy08g003780 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.8e-18
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 58  LSIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +  S +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSY 177
           VR+E WY+P +  Y D++ +LA N   ++ + +   LK E  L  +   F  L+R  +  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 KLGELAMESYYLMKEVGCEPDKTSFRIVIKGL 210
           +L   AM  Y  M+E    P    FR+++KGL
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151

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BLAST of Lcy08g003780 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-17
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA +    L       ++RL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRKEHWYKP-QVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+++  +   +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIDGFNALLRALVSYKLGELAMESYYLMKEVG-----CEPDKTSFRIVIKGLDATGE 215
           +      L+RA+V  +  E  +  Y LM+E G      E D+    ++ KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

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BLAST of Lcy08g003780 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08
Identity = 32/113 (28.32%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 95  MMAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYL 154
           ++  L E +++N    ALK+F  +RK+HWY+P+   Y  +  +L +    +Q  ++   +
Sbjct: 61  VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 120

Query: 155 KAETDLAPEIDGFNALLRALVSYKLGELAMESYYLMKEVG-CEPDKTSFRIVI 207
            +E  L P ID + +L+      +L + A  +   MK V  C+PD  +F ++I
Sbjct: 121 LSE-GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

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BLAST of Lcy08g003780 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 32/111 (28.83%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 120 KEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRAL--VSY 179
           + H  KP +  Y  ++   A  GL E+ + I   L+ E  L P++  +NAL+ +     Y
Sbjct: 291 RSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGY 350

Query: 180 KLGELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKI 229
             G  A E + LM+ +GCEPD+ S+ I++      G  +D   V ++ +++
Sbjct: 351 PYG--AAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398

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BLAST of Lcy08g003780 vs. ExPASy TrEMBL
Match: A0A6J1GL50 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455325 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 8.5e-113
Identity = 216/249 (86.75%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT PS TILSPP  LL SGGK S LRLGR   YRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           E WYKPQVSLYADI+++LASNGLFEQVQIIHSY KAETDLAPEI+GFN LL+ALVSY LG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMKEVGCEPDKTSFRIVIKGL++T E+ DLRTVK+DAQ++YGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAVPTH 250
           EAAT + TH
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of Lcy08g003780 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.5e-112
Identity = 215/249 (86.35%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT PS TILSPP  LL SGGK S LRLGR   YRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           E WYKPQVSLYADI+++LASNGLFEQVQIIHSYLKAETDLAPEI+GFN LL+ALVSY LG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMKEVGCEPDK SFRIVIKGL++T E+ DLR VK+DAQ++YGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAVPTH 250
           EAAT + TH
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of Lcy08g003780 vs. ExPASy TrEMBL
Match: A0A6J1C1T5 (pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charantia OX=3673 GN=LOC111007673 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.1e-111
Identity = 217/246 (88.21%), Postives = 225/246 (91.46%), Query Frame = 0


Query: 1   MSFLATPPSP-TILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA PPSP TI S P  LLSSG K+SCLRLGRA EYRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVR 120
           IEAIQAVQSLKR K D QQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALKVFEDVR
Sbjct: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALKVFEDVR 120

Query: 121 KEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKL 180
            EHWYKPQVSLYADIIT+LASNGLFEQVQIIHSYLK ETDLAPEIDGFNALLRALVSY L
Sbjct: 121 NEHWYKPQVSLYADIITVLASNGLFEQVQIIHSYLKVETDLAPEIDGFNALLRALVSYNL 180

Query: 181 GELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEE 240
           GELAMESYYLMK+VGCEPDKTSFRIVIKGL++T EA DLR VKQDAQKIYG+ LEFLEEE
Sbjct: 181 GELAMESYYLMKKVGCEPDKTSFRIVIKGLESTVEAVDLRIVKQDAQKIYGDLLEFLEEE 240

Query: 241 NEAATA 246
           +EAA A
Sbjct: 241 DEAAIA 246

[Close]

BLAST of Lcy08g003780 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.4e-107
Identity = 209/245 (85.31%), Postives = 222/245 (90.61%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATP SPTI SP     SS G A CL+LGRA  Y RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKD QQLDRVYDSKI+RLLKFDM+AVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           EHWYKPQVSLYADIIT+LASNGLFE+VQII SY+KAE DLAPEIDGFNALL+ALVS+ LG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMK+VGCEPDK SFRIVIKGL++ GEA DLRTVKQDAQ++YGESLEFLEEE 
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 EAATA 246
           E ATA
Sbjct: 241 EGATA 245

[Close]

BLAST of Lcy08g003780 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.1e-107
Identity = 209/249 (83.94%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T PSPTILSPP  L SS  K  CL+LGRA  Y RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKD QQLDRVYDSKI+RLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           EHWYKPQVSLYADIIT+LASNGLFE+VQII SY+KAETDLAPEIDGFNALL+ALV + LG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           +LAMESYYLMKEVGCEP+K SFRIVIKGL+  GEA DLRTVKQDAQK+YGESLEFLEE  
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EAATAVPTH 250
           E ATA+  H
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of Lcy08g003780 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 421.8 bits (1083), Expect = 4.2e-114
Identity = 218/249 (87.55%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFL  PPSPTILSP   LLSSGG+ASCL LGRA  YR+VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           EHWYKPQVSLYADII +LASNGLFE+VQIIHSYLKAETDLAPEIDGFNALL+ALVS+ LG
Sbjct: 121 EHWYKPQVSLYADIIRVLASNGLFERVQIIHSYLKAETDLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMKE+GCEPDK SFRIVIKGL++ GEA DLRTVKQDAQK+YGESLEFLEEE 
Sbjct: 181 ELAMESYYLMKEIGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 240

Query: 241 EAATAVPTH 250
           EAA A+ TH
Sbjct: 241 EAAIAISTH 249

[Close]

BLAST of Lcy08g003780 vs. NCBI nr
Match: XP_022952712.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 416.4 bits (1069), Expect = 1.7e-112
Identity = 216/249 (86.75%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT PS TILSPP  LL SGGK S LRLGR   YRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           E WYKPQVSLYADI+++LASNGLFEQVQIIHSY KAETDLAPEI+GFN LL+ALVSY LG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMKEVGCEPDKTSFRIVIKGL++T E+ DLRTVK+DAQ++YGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAVPTH 250
           EAAT + TH
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of Lcy08g003780 vs. NCBI nr
Match: XP_023554588.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554589.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554590.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-111
Identity = 213/249 (85.54%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT PSPTILSPP  LL SGGK S LRLGR   YRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSPTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           E WYKPQ+SLYADI+++LASNGLFE VQIIHSYLKAETDLAPEI+GFN LL+ALVSY LG
Sbjct: 121 EDWYKPQISLYADIVSVLASNGLFEPVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMK+VGCEPDKTSFRIVIKGL++T E+ DLRTVK+DAQ++YGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKKVGCEPDKTSFRIVIKGLESTTESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAVPTH 250
           + AT + TH
Sbjct: 241 DPATGISTH 249

[Close]

BLAST of Lcy08g003780 vs. NCBI nr
Match: XP_022969229.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969230.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969231.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022969232.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-111
Identity = 215/249 (86.35%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT PS TILSPP  LL SGGK S LRLGR   YRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           E WYKPQVSLYADI+++LASNGLFEQVQIIHSYLKAETDLAPEI+GFN LL+ALVSY LG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           ELAMESYYLMKEVGCEPDK SFRIVIKGL++T E+ DLR VK+DAQ++YGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAVPTH 250
           EAAT + TH
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of Lcy08g003780 vs. NCBI nr
Match: KAG6572189.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.8 bits (1057), Expect = 4.3e-111
Identity = 213/249 (85.54%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFLATPPSPTILSPPDMLLSSGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT PS TILSPP  LL SGGK S LRLGR   YRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRAKKD QQLDRVYDSKI+RLLKFDMMAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLG 180
           E WYKPQVSLYADI+++LASNGLFEQVQIIHSY KAETDLAPEI+GFN LL+ALV+Y LG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEEN 240
           +LAMESYYLMKEVGCEPDKTSFRIVIKGL++T E+ DLRTVK+DAQ++YGESLEFLEEE+
Sbjct: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EAATAVPTH 250
           EAAT +  H
Sbjct: 241 EAATGISMH 249

[Close]

BLAST of Lcy08g003780 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-59
Identity = 122/238 (51.26%), Postives = 164/238 (68.91%), Query Frame = 0


Query: 22  SGGKASCLRLGRAVEYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRA--------- 81
           +GG+   L+    ++     MR  S+NRKPLQ+GR LSIEAIQAVQ+LKRA         
Sbjct: 474 TGGRIQILQRAMVIK-----MRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPV 533

Query: 82  ------KKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFEDVRKEHWYKP 141
                    S  LDRV  SK +RLLKFDM+AVLRELLRQNECSLALKVFE++RKE+WYKP
Sbjct: 534 PSTSTTSSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKP 593

Query: 142 QVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSYKLGELAMES 201
           QV +Y D+IT++A N L E+V  ++S +K+E  L  EI+ FN LL  L+++KL +L M+ 
Sbjct: 594 QVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDC 653

Query: 202 YYLMKEVGCEPDKTSFRIVIKGLDATGEAADLRTVKQDAQKIYGESLEFLEEENEAAT 245
           Y  M+ +G EPD+ SFR+++ GL++ GE      V+QDA + YGESLEF+EE+ E ++
Sbjct: 654 YAFMQSIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEISS 706

[Close]

BLAST of Lcy08g003780 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-21
Identity = 57/162 (35.19%), Postives = 95/162 (58.64%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGF 168
            +LA+K+FE ++K+ WY+P V +Y D+I  LA +   ++   +   +K E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLRALVSYKLGELAMESYYLMKEVGCEPDKTSFRIVIKGL 210
             ++R  +       AM  Y  M +    P++  FR+++KGL
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223

[Close]

BLAST of Lcy08g003780 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-19
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 58  LSIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +  S +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAPEIDGFNALLRALVSY 177
           VR+E WY+P +  Y D++ +LA N   ++ + +   LK E  L  +   F  L+R  +  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 KLGELAMESYYLMKEVGCEPDKTSFRIVIKGL 210
           +L   AM  Y  M+E    P    FR+++KGL
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151

[Close]

BLAST of Lcy08g003780 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-18
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDSQQLDRVYDSKIKRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA +    L       ++RL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRKEHWYKP-QVSLYADIITLLASNGLFEQVQIIHSYLKAETDLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+++  +   +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIDGFNALLRALVSYKLGELAMESYYLMKEVG-----CEPDKTSFRIVIKGLDATGE 215
           +      L+RA+V  +  E  +  Y LM+E G      E D+    ++ KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of Lcy08g003780 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-09
Identity = 32/113 (28.32%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 95  MMAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITLLASNGLFEQVQIIHSYL 154
           ++  L E +++N    ALK+F  +RK+HWY+P+   Y  +  +L +    +Q  ++   +
Sbjct: 111 VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 170

Query: 155 KAETDLAPEIDGFNALLRALVSYKLGELAMESYYLMKEVG-CEPDKTSFRIVI 207
            +E  L P ID + +L+      +L + A  +   MK V  C+PD  +F ++I
Sbjct: 171 LSE-GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 222

The following BLAST results are available for this feature:

BLAST of Lcy08g003780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	8.1e-20	35.19	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	5.8e-18	36.18	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9LVW6	2.2e-17	37.85	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9SCP4	7.1e-08	28.32	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
O82178	1.6e-07	28.83	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lcy08g003780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL50	8.5e-113	86.75	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1HX85	5.5e-112	86.35	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1C1T5	6.1e-111	88.21	pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charanti...	[more]
A0A0A0K6A9	2.4e-107	85.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1	[more]
A0A5A7UZI6	3.1e-107	83.94	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lcy08g003780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888189.1	4.2e-114	87.55	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]	[more]
XP_022952712.1	1.7e-112	86.75	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata]	[more]
XP_023554588.1	1.1e-111	85.54	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022969229.1	1.1e-111	86.35	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_02296923...	[more]
KAG6572189.1	4.3e-111	85.54	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]

BLAST of Lcy08g003780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	1.8e-59	51.26	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	5.8e-21	35.19	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	4.1e-19	36.18	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	1.6e-18	37.85	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G53170.1	5.1e-09	28.32	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 167..198 e-value: 0.0013 score: 16.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 158..207 e-value: 6.8E-5 score: 22.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..228 e-value: 1.1E-43 score: 151.0
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 26..243
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 26..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g003780.1	Lcy08g003780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding