Lcy08g003530 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g003530
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type domain-containing protein
Location	Chr08: 4739182 .. 4741284 (-)
RNA-Seq Expression	Lcy08g003530
Synteny	Lcy08g003530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATATCTTCACCAATCTTTCTCAACAATTTCACCATTTCTCTTCAGAATTTTGTTCTTTTCGATCCGATTCTCTCTGTTTCTCTTCGTTCTCGAAGATTGAAGCCTTTGAAGTAAGTCTCCGGTCGCCTCTTTTTCGTTTTATTTATGAAGAAATGTTCACTTTCCATTAATGGGTTTTATCTAGTTTCTCAATTTGGTAAAGATGGAATCCTTCTTTTATGAGCATTTTAGTTTCTTCGTTTTTCATTGGTCGATTGTGAACTTTTGCCTTCAGTGGGTTGTTGTTCTTTATTCTGCTTGACGATGGAGGAGGGTTTCCATTTTCACTTAAACTGGTGTGTTTGAATTCCTTGGAGTGTTTTGTGGAATGTATTGATTGTTTTTGTTCTTGGGTTTTTATATTGGTGAAATTTCTCCATGGTGTTCGTTGTTAATTCTTGTCTGAACTGTGAAGATTTGGAAATTGGGGACCCCTTTTTTCTGTAGGGTTTGTTTTGACTGAAATCCAGTGTTGAGTGGTAGCTTTTAAACCAGTGGATTATGATTCCTGTGAAAAACTGTAATTTCATATAATTTAATGGAACAAAAAGAATGCTCTTCTGTTTTCCTTCAGGTTCTGCTTCTGCTGATCTCTATTTTCTTCTTCCAGTTCATAGGATTGTCGAATTTTCATTAATCAGTTGCATACTTCATTTTATTTCCTGATGATTTATTCATGAAGTTCAGTTCTTTATTACATGGTAGCGAAACGTGCTTAGTTGTTTTTTAACTGGCTTCAGGTCTGATGTGAAGAAAGGCTAGCTTTGCGACCTCTGCTGTGTATTTCCAATCAGTCTGCTAGCTTTTTGCTGCCTGTACCGATTGAGTCTGAGAAGTTTGGTTCGACCACGATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGCGCTTCTTGTAAACACCGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATTCTTCACATTGTAGGAATTCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGAAAATTCCTCAGAGTTGGGAGATTCCAATTTTGGTTCCTCTTGGAGTTATATTGAGATGTTTCGGAACCGATGTTCTACGATCAGGTTTGATGAAGTACAGGGATCCGAACATCGTGAACATGACTGCTCAGTCTGCTTAACTCAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACTCAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAGTCGTGCTTTTGGTGAGCGTTTAGTGTGCTAGAACCTCATGTACAGCATACTCTTAAATATAATCGTGAGCGTGTTTCTACCTTCTTCGTGTATGACATTTCGAGTTTGATGTGTCTGACTGGTCTCAGAGACCAAAGTTTTGTCACTGTATGTAATGTTTATGAAGTTCTATGCTTCTGGCTTGTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTATATGGAATTGACTGAGTATGCAGAGAGTTTTTCTTCTGTTTGTTTGATATTGGGAGTGACAGTATGTACAGCAATTTCTTAGAATTACAGTTTGAAGCGATGTTAGGGATTGTTCAGATCTTGGTGGGTAACTCTAATATCTTACAAGTTTTTTTGGTGTGAAATACTGATTGTCTATGGAGCACAATATTGCTCAAAAATCAACGAACTTCACAGGAAAAAAAAAATCGGTTCAAAGTGGTTCCATCAAAATCGACCAGCTACATCCTCGAGCTTGGCCTATCATCCATCCTTCTCTCTCCATTTTTGACCACCATTAGAAATTCACCATGATTCTGATCATATGCTTTTATACCAATTGGATAGAAACCAGATTGAAATCTAAAATGAAGACACTATTTTGTTGAAAAGCAACTACAACCAGCAAGTCTTTCTTCCTCTGTAACTTCCTAGTACCAGCATGTCTTTCTTCCTTAATTCTTTCATGTAAAGTAATGTAATTCAGCAGTCATCAATAAAATGTTCACATA

mRNA sequence

CTGATATCTTCACCAATCTTTCTCAACAATTTCACCATTTCTCTTCAGAATTTTGTTCTTTTCGATCCGATTCTCTCTGTTTCTCTTCGTTCTCGAAGATTGAAGCCTTTGAAGTCTGATGTGAAGAAAGGCTAGCTTTGCGACCTCTGCTGTGTATTTCCAATCAGTCTGCTAGCTTTTTGCTGCCTGTACCGATTGAGTCTGAGAAGTTTGGTTCGACCACGATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGCGCTTCTTGTAAACACCGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATTCTTCACATTGTAGGAATTCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGAAAATTCCTCAGAGTTGGGAGATTCCAATTTTGGTTCCTCTTGGAGTTATATTGAGATGTTTCGGAACCGATGTTCTACGATCAGGTTTGATGAAGTACAGGGATCCGAACATCGTGAACATGACTGCTCAGTCTGCTTAACTCAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACTCAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAGTCGTGCTTTTGGTGAGCGTTTAGTGTGCTAGAACCTCATGTACAGCATACTCTTAAATATAATCGTGAGCGTGTTTCTACCTTCTTCGTGTATGACATTTCGAGTTTGATGTGTCTGACTGGTCTCAGAGACCAAAGTTTTGTCACTGTATGTAATGTTTATGAAGTTCTATGCTTCTGGCTTGTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTATATGGAATTGACTGAGTATGCAGAGAGTTTTTCTTCTGTTTGTTTGATATTGGGAGTGACAGTATGTACAGCAATTTCTTAGAATTACAGTTTGAAGCGATGTTAGGGATTGTTCAGATCTTGGTGGGTAACTCTAATATCTTACAAGTTTTTTTGGTGTGAAATACTGATTGTCTATGGAGCACAATATTGCTCAAAAATCAACGAACTTCACAGGAAAAAAAAAATCGGTTCAAAGTGGTTCCATCAAAATCGACCAGCTACATCCTCGAGCTTGGCCTATCATCCATCCTTCTCTCTCCATTTTTGACCACCATTAGAAATTCACCATGATTCTGATCATATGCTTTTATACCAATTGGATAGAAACCAGATTGAAATCTAAAATGAAGACACTATTTTGTTGAAAAGCAACTACAACCAGCAAGTCTTTCTTCCTCTGTAACTTCCTAGTACCAGCATGTCTTTCTTCCTTAATTCTTTCATGTAAAGTAATGTAATTCAGCAGTCATCAATAAAATGTTCACATA

Coding sequence (CDS)

ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGCGCTTCTTGTAAACACCGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATTCTTCACATTGTAGGAATTCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGAAAATTCCTCAGAGTTGGGAGATTCCAATTTTGGTTCCTCTTGGAGTTATATTGAGATGTTTCGGAACCGATGTTCTACGATCAGGTTTGATGAAGTACAGGGATCCGAACATCGTGAACATGACTGCTCAGTCTGCTTAACTCAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACTCAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAGTCGTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSSELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW

Homology

[Close]

BLAST of Lcy08g003530 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-38
Identity = 87/150 (58.00%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRL----SSPSSLVPSSDSL 60
           MGLSSLP PSEG+L  +LVNTALSIS+ K IVR  L IVGI L    SSPSS+  SS++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ENSSELGDSNFGSSWSYIEMFRNRCSTIRFDEV-QGSEHREHDCSVCLTQFEPESEINHL 120
            ++SE  D       SY+E FRNR  T+RF+ + +  +  +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHSECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Lcy08g003530 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 76  MFRNRCSTIRFDEVQGS-EHREHDCSVCLTQFEPESEINHL-SCGHLFHSECLEKWLDYW 135
           + R     I+F+E+  S E    +C+VCL +FE E EI  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEEEKSCF 154
             TCPLCRTP + +E +  F
Sbjct: 130 QKTCPLCRTPFVPDEMQEEF 149

[Close]

BLAST of Lcy08g003530 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 72  SYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLD 131
           S + +  ++ +  R    + S++   DC VCL++ +   E+  L C H+FH +CLE WL 
Sbjct: 47  SNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQ 106

Query: 132 YWNITCPLCRTPLM 146
           + N  CPLCR+PL+
Sbjct: 107 HLNFNCPLCRSPLL 120

[Close]

BLAST of Lcy08g003530 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHSECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Lcy08g003530 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-09
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 94  HREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLDYWNITCPLCR 142
           H + +C +CL+ +E E+E+  L CGH FH  C++KWL Y N TCPLC+
Sbjct: 320 HEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCK 366

[Close]

BLAST of Lcy08g003530 vs. ExPASy TrEMBL
Match: A0A6J1HVX6 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111468336 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLNA+L+N ALSIS+FKCIVRLILHIVGIR SSPSSLVPS+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR   IRFD+VQGSE  EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. ExPASy TrEMBL
Match: A0A6J1GLE2 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111455329 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 137/154 (88.96%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLNA+L+N ALSIS+F+CIVRLILHI+GIR SSPSSLVPS+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR  +IRFD+VQGSE  EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLN +LVNTALSISM KCIVRLILH+VGIRLS PSS+V S+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+Y+EMFRNR   IRFD+V+ S+ REHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLN +LVNTALSISM KCIVRLILH+VGIRLS PSS+V S+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+Y+EMFRNR   IRFD+V+ S+ REHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. ExPASy TrEMBL
Match: A0A5A7UYD7 (Putative E3 ubiquitin-protein ligase XERICO isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00230 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 132/153 (86.27%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLN +LVNTALSISM KCIVRLILH+VGIRLS PSS+V S+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+Y+EMFRNR   IRFD+V+ S+ REHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of Lcy08g003530 vs. NCBI nr
Match: KAG6572211.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011849.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLNA+L+N ALSIS+FKCIVRLILHIVGIR SSPSSLVPS+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR  +IRFD+VQGSE  EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. NCBI nr
Match: XP_022969282.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLNA+L+N ALSIS+FKCIVRLILHIVGIR SSPSSLVPS+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR   IRFD+VQGSE  EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. NCBI nr
Match: XP_023554631.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.6 bits (745), Expect = 4.0e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLNA+L+N ALSIS+FKCIVRLILHI+GIR SSPSSLVPS+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR  +IRFD+VQGSE  EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. NCBI nr
Match: XP_022952716.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952718.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 290.4 bits (742), Expect = 9.0e-75
Identity = 137/154 (88.96%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLNA+L+N ALSIS+F+CIVRLILHI+GIR SSPSSLVPS+DS ENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR  +IRFD+VQGSE  EHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Lcy08g003530 vs. NCBI nr
Match: XP_038887530.1 (probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 136/154 (88.31%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MGLSSLPAPSEGVLN +LVNTALSISMFKCIVRLILH++GIRLS PSSLV S+DS E+SS
Sbjct: 66  MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMIGIRLSWPSSLVSSTDSFESSS 125

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSY+EMFRNR  +IRFD++QGSE REHDCSVCLTQFEPESEIN LSCGHL
Sbjct: 126 ELGDSNFGSSWSYLEMFRNRYLSIRFDKIQGSERREHDCSVCLTQFEPESEINILSCGHL 185

Query: 121 FHSECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH+ECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 186 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 219

[Close]

BLAST of Lcy08g003530 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 87/150 (58.00%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRL----SSPSSLVPSSDSL 60
           MGLSSLP PSEG+L  +LVNTALSIS+ K IVR  L IVGI L    SSPSS+  SS++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ENSSELGDSNFGSSWSYIEMFRNRCSTIRFDEV-QGSEHREHDCSVCLTQFEPESEINHL 120
            ++SE  D       SY+E FRNR  T+RF+ + +  +  +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHSECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Lcy08g003530 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 87/150 (58.00%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRL----SSPSSLVPSSDSL 60
           MGLSSLP PSEG+L  +LVNTALSIS+ K IVR  L IVGI L    SSPSS+  SS++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ENSSELGDSNFGSSWSYIEMFRNRCSTIRFDEV-QGSEHREHDCSVCLTQFEPESEINHL 120
            ++SE  D       SY+E FRNR  T+RF+ + +  +  +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHSECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Lcy08g003530 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-15
Identity = 56/150 (37.33%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSS 60
           MG+S  P  SEGV+  L++NT +S+S+ K +VR ++++V            SS++ E  +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDSNFGSSWSYIEMFRNRCSTIRFD---EVQGS--EHREHDCSVCLTQFEPESEINHL 120
           +  D +   S       R R S   F+   E +GS  E    DC VCL  F+ E E++ L
Sbjct: 61  KEDDQDHEDS-----KRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSEL 120

Query: 121 -SCGHLFHSECLEKWLDYWNITCPLCRTPL 145
            SC H FHS CL+KW    + TCPLCR+ L
Sbjct: 121 VSCKHYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Lcy08g003530 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 76  MFRNRCSTIRFDEVQGS-EHREHDCSVCLTQFEPESEINHL-SCGHLFHSECLEKWLDYW 135
           + R     I+F+E+  S E    +C+VCL +FE E EI  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEEEKSCF 154
             TCPLCRTP + +E +  F
Sbjct: 130 QKTCPLCRTPFVPDEMQEEF 149

[Close]

BLAST of Lcy08g003530 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-12
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 72  SYIEMFRNRCSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLD 131
           S + +  ++ +  R    + S++   DC VCL++ +   E+  L C H+FH +CLE WL 
Sbjct: 47  SNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQ 106

Query: 132 YWNITCPLCRTPLM 146
           + N  CPLCR+PL+
Sbjct: 107 HLNFNCPLCRSPLL 120

The following BLAST results are available for this feature:

BLAST of Lcy08g003530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	1.8e-38	58.00	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	1.7e-12	42.50	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZU51	1.2e-10	36.49	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	1.6e-10	49.02	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q8LDB8	2.3e-09	50.00	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]

BLAST of Lcy08g003530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVX6	1.1e-75	90.26	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GLE2	4.3e-75	88.96	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S4E4A9	1.7e-71	86.36	probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3CGH9	1.7e-71	86.36	probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A5A7UYD7	3.2e-70	86.27	Putative E3 ubiquitin-protein ligase XERICO isoform X2 OS=Cucumis melo var. maku...	[more]

BLAST of Lcy08g003530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572211.1	1.8e-75	90.26	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022969282.1	2.4e-75	90.26	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 p...	[more]
XP_023554631.1	4.0e-75	89.61	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]	[more]
XP_022952716.1	9.0e-75	88.96	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1...	[more]
XP_038887530.1	3.8e-73	88.31	probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida]	[more]

BLAST of Lcy08g003530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	1.3e-39	58.00	RING/U-box superfamily protein	[more]
AT2G04240.2	1.3e-39	58.00	RING/U-box superfamily protein	[more]
AT1G67856.1	2.2e-15	37.33	RING/U-box superfamily protein	[more]
AT3G61460.1	1.2e-13	42.50	brassinosteroid-responsive RING-H2	[more]
AT2G01150.1	8.8e-12	36.49	RING-H2 finger protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 1.1E-5 score: 34.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 3.2E-11 score: 43.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.961374
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..146 e-value: 1.2E-17 score: 65.3
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 92..145
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g003530.1	Lcy08g003530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane