Lcy08g003420 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g003420
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSNF1-related protein kinase regulatory subunit beta-2-like isoform X7
LocationChr08: 4635598 .. 4636443 (-)
RNA-Seq ExpressionLcy08g003420
SyntenyLcy08g003420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTGCTGAACCATAGTCAATTGGAGCTGGAATTGCATATGACCATCGAAAGAAGAAGTGGAAGCATCGAAAATTCCAAGCTGAGTGGACGGTCCAAACAAGGTAGTGCCTTGTACTGTAGCTTTCTGTCATACCCACATTTTTTTTTTCTCCCTATGATTGAATGGAAATGGCAATGGAAATGGAACTGAATAAGCCGTGGCAGTTCTACAACCATACAAATTTGTAGCCCTTTTCTTCTTTTTCTTCGGAACCACTTGCAAGGTGTTTGACAAAATGCCGCAATGGTTAAGTAAAAAAGTTTTCCTTTAATGGGTCCACTTTACAACTTGCTAATCAATCATGAATTGATTCTTTATAGGAAAATGGTTTGATTCTTTTGAATTAAGACGACAGCAATCGTAATTGTGTTGTATCTTAGTTGTGAATTGAATCCCACCAGTCACAATCACTGTAGAAACTACAGCTTGAAGGAAAGAAATGTTTATATCAATAATTGGTGGTGGTTTGTTGTATTGTACTAGAGTTAGTAAGATACGTTACATTAAACTTGGACCCTTGAATCACCAAATGTAGATAATTGTGAATGGGATTGCTTTGAATGTGAAGAAACGGTAAAGATTTTTATGGCAGCTCTGGAGATGTCTCTTTTGAAGATCTACATCGAGCACATTGCTGTCAGGATGGGCCAACGAAAGAAGAAGCAGACTCATGTAGATGCTCCACCGAGTGGCGGTGTCAGCATCTCCAACTTGGTGATGTCAACATTTAACCACCAAACTCTCAACTCCATACGCAAAAGGAGGGCAGTGGAAGTTTACGATGTACGTGCTAACTCCTAA

mRNA sequence

ATGAGATTGCTGAACCATAGTCAATTGGAGCTGGAATTGCATATGACCATCGAAAGAAGAAGTGGAAGCATCGAAAATTCCAAGCTGAGTGGACGGTCCAAACAAGATAATTGTGAATGGGATTGCTTTGAATGTGAAGAAACGGTAAAGATTTTTATGGCAGCTCTGGAGATGTCTCTTTTGAAGATCTACATCGAGCACATTGCTGTCAGGATGGGCCAACGAAAGAAGAAGCAGACTCATGTAGATGCTCCACCGAGTGGCGGTGTCAGCATCTCCAACTTGGTGATGTCAACATTTAACCACCAAACTCTCAACTCCATACGCAAAAGGAGGGCAGTGGAAGTTTACGATGTACGTGCTAACTCCTAA

Coding sequence (CDS)

ATGAGATTGCTGAACCATAGTCAATTGGAGCTGGAATTGCATATGACCATCGAAAGAAGAAGTGGAAGCATCGAAAATTCCAAGCTGAGTGGACGGTCCAAACAAGATAATTGTGAATGGGATTGCTTTGAATGTGAAGAAACGGTAAAGATTTTTATGGCAGCTCTGGAGATGTCTCTTTTGAAGATCTACATCGAGCACATTGCTGTCAGGATGGGCCAACGAAAGAAGAAGCAGACTCATGTAGATGCTCCACCGAGTGGCGGTGTCAGCATCTCCAACTTGGTGATGTCAACATTTAACCACCAAACTCTCAACTCCATACGCAAAAGGAGGGCAGTGGAAGTTTACGATGTACGTGCTAACTCCTAA

Protein sequence

MRLLNHSQLELELHMTIERRSGSIENSKLSGRSKQDNCEWDCFECEETVKIFMAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRRAVEVYDVRANS
Homology
[Close]
BLAST of Lcy08g003420 vs. ExPASy TrEMBL
Match: A0A6J1ENT4 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111435212 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. ExPASy TrEMBL
Match: A0A6J1ERI1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X7 OS=Cucurbita moschata OX=3662 GN=LOC111435212 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. ExPASy TrEMBL
Match: A0A6J1ENS9 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435212 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. ExPASy TrEMBL
Match: A0A6J1EKM3 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111435212 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. ExPASy TrEMBL
Match: A0A6J1EK37 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435212 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. NCBI nr
Match: KAG7022788.1 (hypothetical protein SDJN02_16524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-25
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 0 

Query: 17  IERRSGSIENSKLSGRSKQDNCEWDCFECEETVKIFMAALEMSLLKIYIEHIAVRMGQRK 76
           +E  +GSIENSKLSGR+KQ           ETVKI MAALEMSLLK+YIEHIAVRMGQ K
Sbjct: 1   MEEGTGSIENSKLSGRTKQ-----------ETVKISMAALEMSLLKVYIEHIAVRMGQGK 60

Query: 77  KKQTHVDAPPSGGVSISNLVMSTFNHQTLN 107
           KKQTHVDAPP GGVS SNLV+STFNH TLN
Sbjct: 61  KKQTHVDAPPGGGVSFSNLVISTFNHLTLN 79

[Close]
BLAST of Lcy08g003420 vs. NCBI nr
Match: XP_022928363.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. NCBI nr
Match: XP_022928365.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X7 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. NCBI nr
Match: XP_022928361.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

[Close]
BLAST of Lcy08g003420 vs. NCBI nr
Match: XP_022928364.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X6 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 53  MAALEMSLLKIYIEHIAVRMGQRKKKQTHVDAPPSGGVSISNLVMSTFNHQTLNSIRKRR 112
           MAALEMSLLK+YIEHIAVRMGQ KKKQTHVDAPP GGVS SNLV+STFNH TLN     R
Sbjct: 1   MAALEMSLLKVYIEHIAVRMGQGKKKQTHVDAPPGGGVSFSNLVISTFNHLTLNFKEGSR 60

Query: 113 AVEVYD 119
           ++ + D
Sbjct: 61  SLRLMD 66

The following BLAST results are available for this feature:
BLAST of Lcy08g003420 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g003420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ENT46.6e-1875.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X5 OS=Cucurbi... [more]
A0A6J1ERI16.6e-1875.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X7 OS=Cucurbi... [more]
A0A6J1ENS96.6e-1875.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 OS=Cucurbi... [more]
A0A6J1EKM36.6e-1875.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X6 OS=Cucurbi... [more]
A0A6J1EK376.6e-1875.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X3 OS=Cucurbi... [more]
BLAST of Lcy08g003420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022788.18.9e-2574.44hypothetical protein SDJN02_16524 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022928363.11.4e-1775.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X5 [Cucurbita... [more]
XP_022928365.11.4e-1775.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X7 [Cucurbita... [more]
XP_022928361.11.4e-1775.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X3 [Cucurbita... [more]
XP_022928364.11.4e-1775.76SNF1-related protein kinase regulatory subunit beta-2-like isoform X6 [Cucurbita... [more]
BLAST of Lcy08g003420 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g003420.1Lcy08g003420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm