Lcy08g003340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g003340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat (PPR-like) superfamily protein
Location	Chr08: 4580747 .. 4581400 (-)
RNA-Seq Expression	Lcy08g003340
Synteny	Lcy08g003340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATATGCTTCTTCTTATCAGCGACTCAATTCAGCTTCGCTTTGTTTTCCTTGATTCTCAATCAATTTCCCCTCACATTTCCGATTCTATTTCAACTCCCATTTTTCCTCAATCACGTATTACGACGACCTTCTCGATTTCTTCGATCATCTTCTTCGACAATGCAGCGGGATTCAACACTGCAAATAAGTTCATTCTGCCACCGTTGTCACAGGCGCGGGTTCGTAGCCGTTCGTCGCCGCTCGGCTTGTGTCCGTCTATGCCCGTTCTGGGTTTGTTTTCGATGCCCGGAAAGTGTTTGATTCGTCGCCATTTGAAGGTTTGTCGAACTTGCTGTTATGGAATTCGATTATAAGAGCAAATGTATCTCATGGGTACTGCAGAGAAGCGCTTCAACTTTATGGGAAAATGAGAAATTTTGGGGTTTTGGCTGATGGGTTTACTTTTCCTCTGGTTTTGAGGGCTTCTTCCAATTTGGGTAGTTTCAACTTGTGCAAGAATCTTCATTGTCATGTTGTGCAATTTGGATTCCAAAATCATATGCATGTTGTGAATGAATTGATAGGAATGTATGCGAAGCTCGGTCGAATGGATGATGTTAGGAAAGTGTTTGATATGCAGTCATTTGTGGATTTGCTTCCAATGGACTAG

mRNA sequence

ATGCCGTTCGTCGCCGCTCGGCTTGTGTCCGTCTATGCCCGTTCTGGGTTTGTTTTCGATGCCCGGAAAGTGTTTGATTCGTCGCCATTTGAAGGTTTGTCGAACTTGCTGTTATGGAATTCGATTATAAGAGCAAATGTATCTCATGGGTACTGCAGAGAAGCGCTTCAACTTTATGGGAAAATGAGAAATTTTGGGGTTTTGGCTGATGGGTTTACTTTTCCTCTGGTTTTGAGGGCTTCTTCCAATTTGGGTAGTTTCAACTTGTGCAAGAATCTTCATTGTCATGTTGTGCAATTTGGATTCCAAAATCATATGCATGTTGTGAATGAATTGATAGGAATGTATGCGAAGCTCGGTCGAATGGATGATGTTAGGAAAGTGTTTGATATGCAGTCATTTGTGGATTTGCTTCCAATGGACTAG

Coding sequence (CDS)

ATGCCGTTCGTCGCCGCTCGGCTTGTGTCCGTCTATGCCCGTTCTGGGTTTGTTTTCGATGCCCGGAAAGTGTTTGATTCGTCGCCATTTGAAGGTTTGTCGAACTTGCTGTTATGGAATTCGATTATAAGAGCAAATGTATCTCATGGGTACTGCAGAGAAGCGCTTCAACTTTATGGGAAAATGAGAAATTTTGGGGTTTTGGCTGATGGGTTTACTTTTCCTCTGGTTTTGAGGGCTTCTTCCAATTTGGGTAGTTTCAACTTGTGCAAGAATCTTCATTGTCATGTTGTGCAATTTGGATTCCAAAATCATATGCATGTTGTGAATGAATTGATAGGAATGTATGCGAAGCTCGGTCGAATGGATGATGTTAGGAAAGTGTTTGATATGCAGTCATTTGTGGATTTGCTTCCAATGGACTAG

Protein sequence

MPFVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRMDDVRKVFDMQSFVDLLPMD

Homology

[Close]

BLAST of Lcy08g003340 vs. ExPASy Swiss-Prot
Match: Q9LNP2 (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E72 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30
Identity = 64/126 (50.79%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 4   VAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMR 63
           +AA L+SVYAR G + DAR VF++     LS+L LWNSI++ANVSHG    AL+LY  MR
Sbjct: 91  LAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMR 150

Query: 64  NFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRMD 123
             G+  DG+  PL+LRA   LG F LC+  H  V+Q G + ++HVVNEL+ +Y K GRM 
Sbjct: 151 QRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMG 210

Query: 124 DVRKVF 130
           D   +F
Sbjct: 211 DAYNLF 216

[Close]

BLAST of Lcy08g003340 vs. ExPASy Swiss-Prot
Match: Q9FK33 (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-16
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV+  L+ +Y++ G + DAR  F+  P +     + WN++I     HGY  EAL L   M
Sbjct: 260 FVSCGLIDMYSKCGDIEDARCAFECMPEK---TTVAWNNVIAGYALHGYSEEALCLLYDM 319

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           R+ GV  D FT  +++R S+ L    L K  H  +++ GF++ +     L+  Y+K GR+
Sbjct: 320 RDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRV 379

Query: 123 DDVRKVFD 131
           D  R VFD
Sbjct: 380 DTARYVFD 384

[Close]

BLAST of Lcy08g003340 vs. ExPASy Swiss-Prot
Match: Q9FXH1 (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX=3702 GN=DYW7 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV  +L+S+YA+ G + DARKVFDS       NL  W+++I A       RE  +L+  M
Sbjct: 116 FVETKLLSMYAKCGCIADARKVFDSMRER---NLFTWSAMIGAYSRENRWREVAKLFRLM 175

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
              GVL D F FP +L+  +N G     K +H  V++ G  + + V N ++ +YAK G +
Sbjct: 176 MKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGEL 235

Query: 123 DDVRKVF 130
           D   K F
Sbjct: 236 DFATKFF 239

[Close]

BLAST of Lcy08g003340 vs. ExPASy Swiss-Prot
Match: Q9SB36 (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-16
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 4   VAARLVSVYARSGF------VFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQ 63
           ++++LV +YA  G+      VFD     DSSPF        WNS+I      G   +A+ 
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPF-------AWNSLISGYAELGQYEDAMA 188

Query: 64  LYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYA 123
           LY +M   GV  D FTFP VL+A   +GS  + + +H  +V+ GF   ++V+N L+ MYA
Sbjct: 189 LYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYA 248

Query: 124 KLGRMDDVRKVFDM 132
           K G +   R VFDM
Sbjct: 249 KCGDIVKARNVFDM 255

[Close]

BLAST of Lcy08g003340 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-16
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV   LV++Y+R   + DARKVFD      + +++ WNSII +    G  + AL+++ +M
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEM---SVWDVVSWNSIIESYAKLGKPKVALEMFSRM 222

Query: 63  RN-FGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGR 122
            N FG   D  T   VL   ++LG+ +L K LHC  V      +M V N L+ MYAK G 
Sbjct: 223 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 282

Query: 123 MDDVRKVFDMQSFVDLL 139
           MD+   VF   S  D++
Sbjct: 283 MDEANTVFSNMSVKDVV 296

[Close]

BLAST of Lcy08g003340 vs. ExPASy TrEMBL
Match: A0A6J1D1Z6 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Momordica charantia OX=3673 GN=LOC111016857 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSG VFDARKVFD++PFEGLSNLLLWNSIIRANVSHGYC E LQLYGKM
Sbjct: 78  FVAARLVSVYARSGLVFDARKVFDTAPFEGLSNLLLWNSIIRANVSHGYCGEVLQLYGKM 137

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           R  GVL DGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNH+HVVNELIGMYAKLGRM
Sbjct: 138 RRLGVLGDGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHLHVVNELIGMYAKLGRM 197

Query: 123 DDVRKVFD 131
            D +KVFD
Sbjct: 198 GDAQKVFD 205

[Close]

BLAST of Lcy08g003340 vs. ExPASy TrEMBL
Match: A0A6J1KAZ0 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita maxima OX=3661 GN=LOC111492667 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.2e-59
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GYCREALQLYGKM
Sbjct: 79  FVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIRANVD-GYCREALQLYGKM 138

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           RNFGVLADGFTFPLVLRASSNLG FNLCK LHCHVVQFGFQNH+HVVNELIGMY KL RM
Sbjct: 139 RNFGVLADGFTFPLVLRASSNLGIFNLCKTLHCHVVQFGFQNHLHVVNELIGMYVKLRRM 198

Query: 123 DDVRKVFD 131
            D RKVFD
Sbjct: 199 GDARKVFD 205

[Close]

BLAST of Lcy08g003340 vs. ExPASy TrEMBL
Match: A0A6J1GD03 (putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita moschata OX=3662 GN=LOC111452827 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.4e-56
Identity = 112/128 (87.50%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSGFVFDARKVFD+ PFE L NLLLWNSIIRANV  GY REALQLYGKM
Sbjct: 84  FVAARLVSVYARSGFVFDARKVFDTVPFEALWNLLLWNSIIRANVD-GYSREALQLYGKM 143

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           +NFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF NH+HVVNEL+GMY KL RM
Sbjct: 144 KNFGVLADGFTFPLVLRASSNLGIFNLCKSLHCHVVQFGFHNHLHVVNELMGMYVKLRRM 203

Query: 123 DDVRKVFD 131
           DD RKVFD
Sbjct: 204 DDARKVFD 210

[Close]

BLAST of Lcy08g003340 vs. ExPASy TrEMBL
Match: A0A0A0LFT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.0e-55
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV+ARLVS+Y+R G V DARKVF S+PFE  SN LLWNSIIRANV HGYC EALQLYGKM
Sbjct: 71  FVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKM 130

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           RN+GVL DGFTFPL+LRASSNLG+FN+CKNLHCHVVQFGFQNH+HV NELIGMYAKL RM
Sbjct: 131 RNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERM 190

Query: 123 DDVRKVFD 131
           DD RKVFD
Sbjct: 191 DDARKVFD 198

[Close]

BLAST of Lcy08g003340 vs. ExPASy TrEMBL
Match: A0A5A7U7B1 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001350 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV+ARLVS+Y+R G V DARKVF S+PFE LSN LLWNSIIRANV HGYC EAL LYGKM
Sbjct: 71  FVSARLVSIYSRYGLVSDARKVFGSAPFECLSNFLLWNSIIRANVYHGYCIEALHLYGKM 130

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           RN+GVL DGFTFPLVLRASSNLG+ ++CKNLHCHVVQFGFQNH+HV NELIGMYAKL RM
Sbjct: 131 RNYGVLGDGFTFPLVLRASSNLGTSDVCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERM 190

Query: 123 DDVRKVFD 131
           DD RKVFD
Sbjct: 191 DDARKVFD 198

[Close]

BLAST of Lcy08g003340 vs. NCBI nr
Match: XP_022148095.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-60
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSG VFDARKVFD++PFEGLSNLLLWNSIIRANVSHGYC E LQLYGKM
Sbjct: 78  FVAARLVSVYARSGLVFDARKVFDTAPFEGLSNLLLWNSIIRANVSHGYCGEVLQLYGKM 137

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           R  GVL DGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNH+HVVNELIGMYAKLGRM
Sbjct: 138 RRLGVLGDGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHLHVVNELIGMYAKLGRM 197

Query: 123 DDVRKVFD 131
            D +KVFD
Sbjct: 198 GDAQKVFD 205

[Close]

BLAST of Lcy08g003340 vs. NCBI nr
Match: XP_022997825.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GYCREALQLYGKM
Sbjct: 79  FVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIRANVD-GYCREALQLYGKM 138

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           RNFGVLADGFTFPLVLRASSNLG FNLCK LHCHVVQFGFQNH+HVVNELIGMY KL RM
Sbjct: 139 RNFGVLADGFTFPLVLRASSNLGIFNLCKTLHCHVVQFGFQNHLHVVNELIGMYVKLRRM 198

Query: 123 DDVRKVFD 131
            D RKVFD
Sbjct: 199 GDARKVFD 205

[Close]

BLAST of Lcy08g003340 vs. NCBI nr
Match: XP_023523771.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 4.1e-58
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GY REALQLYGKM
Sbjct: 79  FVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIRANVD-GYSREALQLYGKM 138

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           RNFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGFQNH+HVVNEL+GMY KL RM
Sbjct: 139 RNFGVLADGFTFPLVLRASSNLGIFNLCKSLHCHVVQFGFQNHLHVVNELMGMYVKLRRM 198

Query: 123 DDVRKVFD 131
           DD RKVFD
Sbjct: 199 DDARKVFD 205

[Close]

BLAST of Lcy08g003340 vs. NCBI nr
Match: KAG7036432.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-57
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GY REALQLYGKM
Sbjct: 79  FVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIRANVD-GYSREALQLYGKM 138

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           +NFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF NH+HVVNEL+GMY KL RM
Sbjct: 139 KNFGVLADGFTFPLVLRASSNLGIFNLCKSLHCHVVQFGFHNHLHVVNELMGMYVKLRRM 198

Query: 123 DDVRKVFD 131
           DD RKVFD
Sbjct: 199 DDARKVFD 205

[Close]

BLAST of Lcy08g003340 vs. NCBI nr
Match: KAG6606718.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-57
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GY REALQLYGKM
Sbjct: 79  FVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIRANVD-GYSREALQLYGKM 138

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           +NFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF NH+HVVNEL+GMY KL RM
Sbjct: 139 KNFGVLADGFTFPLVLRASSNLGIFNLCKSLHCHVVQFGFHNHLHVVNELMGMYVKLRRM 198

Query: 123 DDVRKVFD 131
           DD RKVFD
Sbjct: 199 DDARKVFD 205

[Close]

BLAST of Lcy08g003340 vs. TAIR 10
Match: AT1G17630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-31
Identity = 64/126 (50.79%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 4   VAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMR 63
           +AA L+SVYAR G + DAR VF++     LS+L LWNSI++ANVSHG    AL+LY  MR
Sbjct: 91  LAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMR 150

Query: 64  NFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRMD 123
             G+  DG+  PL+LRA   LG F LC+  H  V+Q G + ++HVVNEL+ +Y K GRM 
Sbjct: 151 QRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMG 210

Query: 124 DVRKVF 130
           D   +F
Sbjct: 211 DAYNLF 216

[Close]

BLAST of Lcy08g003340 vs. TAIR 10
Match: AT5G50390.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 9.8e-18
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV+  L+ +Y++ G + DAR  F+  P +     + WN++I     HGY  EAL L   M
Sbjct: 260 FVSCGLIDMYSKCGDIEDARCAFECMPEK---TTVAWNNVIAGYALHGYSEEALCLLYDM 319

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
           R+ GV  D FT  +++R S+ L    L K  H  +++ GF++ +     L+  Y+K GR+
Sbjct: 320 RDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRV 379

Query: 123 DDVRKVFD 131
           D  R VFD
Sbjct: 380 DTARYVFD 384

[Close]

BLAST of Lcy08g003340 vs. TAIR 10
Match: AT1G19720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV  +L+S+YA+ G + DARKVFDS       NL  W+++I A       RE  +L+  M
Sbjct: 116 FVETKLLSMYAKCGCIADARKVFDSMRER---NLFTWSAMIGAYSRENRWREVAKLFRLM 175

Query: 63  RNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGRM 122
              GVL D F FP +L+  +N G     K +H  V++ G  + + V N ++ +YAK G +
Sbjct: 176 MKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGEL 235

Query: 123 DDVRKVF 130
           D   K F
Sbjct: 236 DFATKFF 239

[Close]

BLAST of Lcy08g003340 vs. TAIR 10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-17
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 4   VAARLVSVYARSGF------VFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQ 63
           ++++LV +YA  G+      VFD     DSSPF        WNS+I      G   +A+ 
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPF-------AWNSLISGYAELGQYEDAMA 188

Query: 64  LYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYA 123
           LY +M   GV  D FTFP VL+A   +GS  + + +H  +V+ GF   ++V+N L+ MYA
Sbjct: 189 LYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYA 248

Query: 124 KLGRMDDVRKVFDM 132
           K G +   R VFDM
Sbjct: 249 KCGDIVKARNVFDM 255

[Close]

BLAST of Lcy08g003340 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-17
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 3   FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKM 62
           FV   LV++Y+R   + DARKVFD      + +++ WNSII +    G  + AL+++ +M
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEM---SVWDVVSWNSIIESYAKLGKPKVALEMFSRM 222

Query: 63  RN-FGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVNELIGMYAKLGR 122
            N FG   D  T   VL   ++LG+ +L K LHC  V      +M V N L+ MYAK G 
Sbjct: 223 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 282

Query: 123 MDDVRKVFDMQSFVDLL 139
           MD+   VF   S  D++
Sbjct: 283 MDEANTVFSNMSVKDVV 296

The following BLAST results are available for this feature:

BLAST of Lcy08g003340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNP2	2.2e-30	50.79	Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis th...	[more]
Q9FK33	1.4e-16	35.16	Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidop...	[more]
Q9FXH1	2.4e-16	37.01	Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX...	[more]
Q9SB36	3.1e-16	38.06	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
Q9LFL5	9.0e-16	37.96	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lcy08g003340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1Z6	1.2e-60	90.63	putative pentatricopeptide repeat-containing protein At1g17630 OS=Momordica char...	[more]
A0A6J1KAZ0	5.2e-59	91.41	putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita maxi...	[more]
A0A6J1GD03	5.4e-56	87.50	putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucurbita mosc...	[more]
A0A0A0LFT1	6.0e-55	82.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1	[more]
A0A5A7U7B1	1.1e-53	82.03	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]

BLAST of Lcy08g003340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148095.1	2.6e-60	90.63	putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charan...	[more]
XP_022997825.1	1.1e-58	91.41	putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima...	[more]
XP_023523771.1	4.1e-58	90.63	putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo s...	[more]
KAG7036432.1	3.5e-57	89.06	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG6606718.1	3.5e-57	89.06	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of Lcy08g003340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17630.1	1.6e-31	50.79	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G50390.1	9.8e-18	35.16	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G19720.1	1.7e-17	37.01	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G25270.1	2.2e-17	38.06	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G16860.1	6.4e-17	37.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 110..130 e-value: 0.062 score: 13.6 coord: 39..67 e-value: 3.3E-6 score: 27.0 coord: 8..26 e-value: 0.45 score: 10.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 39..70 e-value: 0.0017 score: 16.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 35..69 score: 9.361008
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..136 e-value: 3.9E-16 score: 61.3
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 3..62
None	No IPR available	PANTHER	PTHR47924:SF46	PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED	coord: 3..62 coord: 35..134
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 35..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g003340.1	Lcy08g003340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding