Lcy08g003130 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g003130
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionChlorophyll a/b-binding family protein
LocationChr08: 4424270 .. 4424611 (-)
RNA-Seq ExpressionLcy08g003130
SyntenyLcy08g003130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGCACAGTAATGAACCCACCATGGTTGGTACCTCCATAGCTTTGTTACAGGAAAGGTTCAGGCGGTTGCAGAAAGACAAGCAAAGGAGAGAGAAGAAGGAGCTTCTTAACCTGTTATCCGATTCAAATAGGGTTGATGGCTCGTCGACCTCAAGAGATTTGGACTCTGATTCCCTCTCCCTTGGCCTGAACTTGCAGAATGCAGGTGAGCAAGTTCATATCCATGAAGCCAGGTTGATGCCTGGTGTGACCAAGTTCTGGCCCGGAAATTCAGTCACGACAAGTACGTTAAGAAGTTTCGATAGTCCAGATGTCGATACTACTCTTCATCTATAG

mRNA sequence

ATGGGTAGGCACAGTAATGAACCCACCATGGTTGGTACCTCCATAGCTTTGTTACAGGAAAGGTTCAGGCGGTTGCAGAAAGACAAGCAAAGGAGAGAGAAGAAGGAGCTTCTTAACCTGTTATCCGATTCAAATAGGGTTGATGGCTCGTCGACCTCAAGAGATTTGGACTCTGATTCCCTCTCCCTTGGCCTGAACTTGCAGAATGCAGGTGAGCAAGTTCATATCCATGAAGCCAGGTTGATGCCTGGTGTGACCAAGTTCTGGCCCGGAAATTCAGTCACGACAAGTACGTTAAGAAGTTTCGATAGTCCAGATGTCGATACTACTCTTCATCTATAG

Coding sequence (CDS)

ATGGGTAGGCACAGTAATGAACCCACCATGGTTGGTACCTCCATAGCTTTGTTACAGGAAAGGTTCAGGCGGTTGCAGAAAGACAAGCAAAGGAGAGAGAAGAAGGAGCTTCTTAACCTGTTATCCGATTCAAATAGGGTTGATGGCTCGTCGACCTCAAGAGATTTGGACTCTGATTCCCTCTCCCTTGGCCTGAACTTGCAGAATGCAGGTGAGCAAGTTCATATCCATGAAGCCAGGTTGATGCCTGGTGTGACCAAGTTCTGGCCCGGAAATTCAGTCACGACAAGTACGTTAAGAAGTTTCGATAGTCCAGATGTCGATACTACTCTTCATCTATAG

Protein sequence

MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVDGSSTSRDLDSDSLSLGLNLQNAGEQVHIHEARLMPGVTKFWPGNSVTTSTLRSFDSPDVDTTLHL
Homology
BLAST of Lcy08g003130 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 93/125 (74.40%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVD---------GSS 60
           MGRH++EPTMVGTSIALLQERFR+LQK+KQRRE+KELLNLL +SNRVD         GSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSDSLSLGLNLQ-NAGEQV--HIHEARLMPGVTKFWPGNSVTTSTLRSFDSPDVD 114
           TSRDLDS+SLSLGLNL+ NAG+QV   IHEAR MPG TKF  GNS   ST RSFDSP+VD
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNVD 120

BLAST of Lcy08g003130 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVD-----------G 60
           MGRH +EPTMVGTSIALLQERFR+LQK+KQ+RE+KELLNLL +SNRVD           G
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSDSLSLGLNLQ-NAGEQV--HIHEARLMPGVTKFWPGNSVTTSTLRSFDSPD 114
           S T R LDS+SLSLGLNL+ N G+QV   IHEAR +P  TKF P NS   STLRSFD+ +
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120

BLAST of Lcy08g003130 vs. ExPASy TrEMBL
Match: A0A2N9FNY6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRV------------- 60
           MGR SN+PTMV +SIALLQERFR+L+K K+RRE+KELL L +++ R+             
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLKLFAETERIMPTTHFEPSKLSF 60

Query: 61  --DGSSTSRDLDSDSLSLGLNLQNAGEQVHIHEARLMPGVTKFWPGNSVTTSTLRSFDSP 114
             +  +  R    DS SLGLNLQ         +A  MP +   WP  +   ST RSF++ 
Sbjct: 61  QPEMITPHRSTLQDSPSLGLNLQTKQAD---FQAMKMPTLPNLWPNGAAMASTSRSFENS 120

BLAST of Lcy08g003130 vs. ExPASy TrEMBL
Match: A0A1Q3CDN4 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21827 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVDGSSTSRDLD--- 60
           MG+ S +P+MV TSIALLQERF +LQ++K++R ++ELL + S S  +   S S       
Sbjct: 1   MGKRSRDPSMVSTSIALLQERFHKLQREKEKRAERELLMIFSKSPSMCFESNSNQFQFHP 60

Query: 61  ----------SDSLSLGLNLQNAGEQVHIHEARLMPGVTKFWPGNSVTTSTLRSFDSPDV 114
                      +SLSLGLNLQN   +  ++ A   P +T FWP ++ T +T R F++ DV
Sbjct: 61  EMCQAERPALQESLSLGLNLQN---KHAVYRAVTTPALTNFWPNSTATANTSRKFENSDV 120

BLAST of Lcy08g003130 vs. ExPASy TrEMBL
Match: A0A7N2M9I5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRV------------- 60
           M R SN+ TMV +SIALLQERFR+L+K K+RRE+KELLNL +++ R+             
Sbjct: 1   MSRQSNDATMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERIMPTTHFEPSKLSF 60

Query: 61  --DGSSTSRDLDSDSLSLGLNLQNAGEQVHIHEARLMPGVTKFWPGNSVTTSTLRSFDSP 114
               ++ +R    DS SL LNLQ     V   +A   P +T  WP  +   ST RSF++ 
Sbjct: 61  QPQMTTPNRSTLRDSPSLELNLQTKQADV---QAMKRPTLTDLWPNGAAMASTSRSFENS 120

BLAST of Lcy08g003130 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-29
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVD-----------G 60
           MGRH +EPTMVGTSIALLQERFR+LQK+KQ+RE+KELLNLL +SNRVD           G
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSDSLSLGLNLQ-NAGEQV--HIHEARLMPGVTKFWPGNSVTTSTLRSFDSPD 114
           S T R LDS+SLSLGLNL+ N G+QV   IHEAR +P  TKF P NS   STLRSFD+ +
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120

BLAST of Lcy08g003130 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVD---------GSS 60
           MGRH++EPTMVGTSIALLQERFR+LQK+KQRRE+KELLNLL +SNRVD         GSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSDSLSLGLNLQ-NAGEQV--HIHEARLMPGVTKFWPGNS 94
           TSRDLDS+SLSLGLNL+ NAG+QV   IHEAR MPG TKF  GNS
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNS 105

BLAST of Lcy08g003130 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 77/117 (65.81%), Postives = 88/117 (75.21%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRVDGSSTSRDLDSDS 60
           M RHS+EP +VGTSIALLQERFR+LQK+K RREKKE++ LLSDSN +   STSRDL  +S
Sbjct: 3   MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSL---STSRDLAFNS 62

Query: 61  LSLGLNLQNAGEQVHIHEARLMPGVTKFWPGNSVTTSTLRSFDSP----DVDTTLHL 114
           LSLGLNL NAG+QV  HE RLMPG TK  P       T RS+D+P    DVDTTLHL
Sbjct: 63  LSLGLNLGNAGKQVDSHEGRLMPGDTKLIP------ITFRSYDTPDVVVDVDTTLHL 110

BLAST of Lcy08g003130 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-22
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 0

Query: 1  MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRV----------DGS 60
          MGRHS+E TM+GTSIALLQERFR+LQKDKQRREKKELL+LLSDSNRV          + S
Sbjct: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 61 STSRDLDSDSLSLGLNLQNAGEQVHIHEARLM 83
          S SRDL+ DSLSLGLN  +AG+QV IHEAR +
Sbjct: 61 SNSRDLNPDSLSLGLNSSSAGKQVDIHEARAL 92

BLAST of Lcy08g003130 vs. NCBI nr
Match: XP_023916992.1 (uncharacterized protein LOC112028527 [Quercus suber])

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-17
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 1   MGRHSNEPTMVGTSIALLQERFRRLQKDKQRREKKELLNLLSDSNRV------------- 60
           MGR SN+PTMV +SIALLQERFR+L+K K+RRE+KELLNL +++ R+             
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERIMPTTHFEPSKLSF 60

Query: 61  --DGSSTSRDLDSDSLSLGLNLQNAGEQVHIHEARLMPGVTKFWPGNSVTTSTLRSFDSP 114
               ++ +R    DS SL LNLQ     V   +A   P +T  WP ++   ST RSF++ 
Sbjct: 61  QPQMTTPNRSTHRDSPSLELNLQTKQADV---QAMKRPTLTDLWPNDAAMASTSRSFENS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6172.9e-3674.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1[more]
A0A5D3E6851.5e-2966.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9FNY62.6e-1645.31Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1[more]
A0A1Q3CDN44.4e-1642.86Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21827 PE=4... [more]
A0A7N2M9I53.7e-1544.53Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0048752.13.2e-2966.93hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583... [more]
KAE8646145.13.0e-2774.29hypothetical protein Csa_016195, partial [Cucumis sativus][more]
KAG6572236.11.1e-2665.81hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589104.13.8e-2270.65hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023916992.16.3e-1746.09uncharacterized protein LOC112028527 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availablePANTHERPTHR34570:SF12EXPRESSED PROTEINcoord: 1..113
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g003130.1Lcy08g003130.1mRNA