Lcy08g002650 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g002650
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionelastin-like
LocationChr08: 3864537 .. 3869198 (+)
RNA-Seq ExpressionLcy08g002650
SyntenyLcy08g002650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGCGAGGAGCACGAACGGAACGAGTTTCGTTTTTTTTTCTTGCCGGCGTGAGGAGCACGCCCGCCGTCCAGATCTCACCGTCTCTCCCTCTCACGTCGAGCCGGTGGAATGAGCTTCGACTATGGCAGCAATGGCGGCGGGAGGAGCACGAACGGACTGGAACGAGCCCAGATCTGGCGTCGTCTCCATCTCCAGCGATCTCTCTCTCCGTCTCCAGCGTCACTCTCTCCGTCGTCACCAGATCTGGTAGATCTATCTCTCTCCGTAGCTCGTTGGAAGAAGAAGAGAGGAGGGGGAAGAAGAAGAAAACAGGAAAAAAAAAAAAAAGTTGTCGCCGGCGGCCGACGAGCGGCGGTTGCCGGCGGTCGGTCGCCGGCGGCTGTTGGTGGTGTGAGCTGTGAGGAAGGTTGCAGAAGAATAAGGAGGGTGGGTGGTGAAGGGGTTAAAGAAGAAGAAAGAAAAAAAATTTAAAAGAATTAAAAATATATTTAAAATTAATATTTTATTATTTTTATTTTAACAAATGAAAAAATAATTTTTTAAATAAAAAAAAATAGATGCCACGTCAGCAATCTGTTAAAATCTAACGGAAAATTGGATGGATGGACTAAAATGCTACTAAATGCAAACCTCAGAGACTAAAATGTTGAGTTTGAAACCTCAGGGACCAAAACGAAACCTAAACTAAACCTCAGGGACTAAAAGTGTATTTTTCCCTTTAATATATGTTACCCAAGATGTATAAGTTTTCATCATCCTAACTTCTTCTCTTCTTTTTTTTTTTTTTTTTTTGACAATTTGGGGTGGAGGATTCGAACCACAGACCACGTAGTTATCAGCACATCCTTATGTCAGTTGAGCTATGCTCTTGTTGGCTCATCATCCTAACTTCTGTAAATTAATTTTAGGGACTTGCTATAAAAATCCAAATTTAAAATAACTAAAGAAATTCATACATGGTTAAATAAGTTTTATTTATCGTTTATATTTTTTTAAAATTTATAATAACCATTGTTTGTTATGTGGATTAAAAATAAAGATATAAATTATACTTCACTATATAAAAATTTATAATAACCATTCTCTTTTCATGGATATATAAAAATGAAAAACGAAAAGTCGTGTGTTTAAAGAACTTTGGTTAAATTGTCTATTTAATTCTTGAACTATCATGGCTGTGTTCATTTAGGGGCGGTGGTCCCTCAATTTGTTTTCCTATATATATATATATCAATTTTCGAAATGTAGTAGTTATTATAATAAAAACATTACACTTTTTTCATAAAATATCTTTTGGCTTAGTGATTTGCTCTTCTCCTTGTAAATGTTAGGTTTTGGCTTAAGTTCCCAAGTTCAAGTTTCACATATCGCAAATTTTAAGAATATGTACATTTTCTATAAACATGTTTCAACATAAAAACTCAAATTTTTTGAGTAAATAATTAAAATTATCTTTAAAAAAATTATAAATCATATTTGTTGTAAGTAATTTATAAATCTAATTATAATATATTTACAAATATGAAAAAAAATTAGTATCATTTTTCTTTGTTTTAATCTATTCTTAAGTTAGTTATATATATATATATATATATATATATCAAATACAAATTTAAAAAAATGTCAAAATGAGCATAGTTCGATGGTAATTGGTATATACTCATTCCTAAGGTTGGAGGTTCAAATCCTCATAGTCCCACATTTGTTTTACTAAAAACAAAATCGAGTCTAAGTCAATAAAAATATAATTCAAAATGGATACAGATATTTTTGAATTTTTAGAAATTACTTTTATTTTTAAGAAAAACTAATGACATAAAAAGAAATTAAAATTTTTATTAAAAAAAAAGACTCCTACTTATTATTTCAAGTTTTGATCTCTTATATACTTAAATAAAAAATTAATTCCAAACTCCAAACTAACGACTAATTTTAAGATTTATTAAAAATACAGGGACTAGATCTGAAATTTTAAAACTATATAGACAAAAGTGGGATGACACTCAAATTATAGGAACCAAAATGATATTTTAACCAAATTAATATCAGTATATTCAAACTAAATTTGGTCTCTATGATTTAAACTAGTTTCCTACTTGGTTCCAGATTTTTTTTTTGGTATTATTTGGTTCTAGATTTTAGAAACTAACACTTTTGGTTCTTGATATTTCAATATAGTTTATATTTGGTTTGTGAAGTTCCAAAAGTGACATGTTTAGTTCCTAATGTTTGAAAATTTGATTTTAATTTCTCTAAAGTTTTTTTTTTTTAAAAAAAAATGGTTTATAAAAAGTCTCCAAGTAGAATTGATAATTGGTTTACTTGATATAACAAAACGATGTCGTTTACTTCCAAAAACATTGTCAAAACTTGACCCCCAGTATGAATTCACCTCCATTCATTTAGACCTTAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGTTGAAAACACCTTTTTAGTCATCAAGATTTTACTTTATTTTGTTATTTAAATTTCCTAAATTTACTTGATAACCATTTAGTTTTTTGGTTATTTGTTTTTTGAAAATTAAATCTGTTTTTTTCACAATTTCTTTACCATTGTATTCATATTTGTTAAAGAAACATTTGAATAGTTAAATAAATATCGCACAAATAATGAATTTTACTTTCATTTTCAATATTTACAAAGTACAAATGGTAAGGGCACAAGCTTGAAGAGATCTTCAATTTTATTTTATTTTATTTATTTTGAGCTCAACAATATTTGAAGGTGGGGATTCCATTATTTGTATTCTGGAACCAATCGATTTTCATCATTAACAACTATAAATAGTTCAACAAAATGAAAAATTCCCATCAATAAAGCCAAGACGATATGCTTTCAAGTTTTTTTTTTAATAACACATGAGAGGATATGGAGATTCGAACCACAGACATGTTGGTCATTAATACAAGTTTTATGTCAATTGTGTTATGCTCATGTAAAACATATAATTACTAGAATCCAATTTTGTTAATATTAGTGTATTTATATTGGACAAAAGAAAAATTGGTGGATGAAATATTCAGTTTTAACATTGGCAACAATGAAGTAGCTAGGTGTGAGAATCAATAAATAAGGTTGCAAACCTTTTTTCTAAGGACTTTAAAGATTGGTTCGAGTATTTAGGTTTGTGATCACTACTTATTCTCAACACAAAGTGATCAAATGATATGCATGTCTCAAAGCTCTGATACACCAATCAGAACTAAAAGATTTTTTTTTTTTTGCCAACAAGAGCATAGCTAGAGAGCAAGAGGAGAAGTCGGGAATAGAGTTCGGGATCCTCTCTTAAGTGGACGAACCAGGCGGAATCGGGGCAGCTAGAGACAGCAGGGACCGAACGGAGGCGAATGAGCTCGACCCGCTTGGGTCGGGCCAAGACCCTTTGGTCTGGTCTTCCTCTGGGTCGGTTTCCTGGTCTTATCTCTGTCCGGTTGTCCTCATCAGCTCCTTGTGCATCAGGGTGGTCCAAAATTAGATTATAATAGAATATATACATTATATTAAGAGGAATAGGTGAGTATTAATTTAAGTATATTGTCCACTTTGGGCATGAGCCCTCATGGCTTTGTTTTTGGATCACCCCAAAAGGTCTCATACCAATGGAGATACTAGTCCTCCCTTATATACCCATGATCATCCCCTTATCTAGCCAATGTGGGACTTTAGTCGCACTCCCAACAAATACAAATTAGAATGATTTACTTTTGTCTTTTTTTACAAATTTGACCATTTGTGCAATTATTTATTGAGCTTTCCAATTACTTAATTTTGGTTCTAAATGAGGTTATATGGTTATTTGTTGGTATGAGTAAAAAAGAAAAGAAGAAGAAGAAAAAAAAGGCCATGGAATAACACTGATTAATATCACTCATACAGAACTTTTATTATAAATATATAGTTTGAGGTTACATATGATATTGTAATAGTTTACATAGTGAACTCAAAAGAAGCTCAAACATCTAAACTTCCCCTATATGAAAATAAAACTTGAATTGAAACCCTACTTTGGAGTCCAAATCACATACATATGTTTATTCTTTGATAATATAAAAGACAAAGTAGTTGATGGAAGACTAAGAAGAGGAGGAAAAGTGGTAGGTGAAATTTCAAGGAGAGGAGGGTATGGTAGTCATTGAAATATTCAACCCTAGGAAATCAGGGAAAAGTTGTTGATGGAGTAGAACCACGAATTTGTGGAAAACGATCGAATCCTGGAAAAACAGGAATAGTTATTTGTGGAGAACGAGGGATAGTGATTGTTGGAGTACTTGGAATAGAAGGAGTAGTAATTGTTGGAGTACGAGAAATAGAAGGGATAGTGATAGTGATTGGTGGAGAACCGGGAATAATGATTGGTGGAGTACCAGGGATTGGTGGAAAACCAGGAATATTTATGGGTAGAAGACCAGGGATAGTTCTTGGCGGAAAACCAGGGATAGTGATTGTTTTACTAGGAGTAGAAGGAGCAGTGATTGGTGGAATACTGGGAATAGAAGGGGTAGTGATTGGTGGAGTTCCCGGAAGAGTTATTTGTGGAGTACTAGGAATAGGAGAGATGGAAATTGGTGGAATAGGAAGAGATGATGTTGGACGACTTTGTTGCAGATAA

mRNA sequence

ATGGCGGAGCGAGGAGCACGAACGGAACGAGTTTCGTTTTTTTTTCTTGCCGGCGTGAGGAGCACGCCCGCCGTCCAGATCTCACCGTCTCTCCCTCTCACGTCGAGCCGGTGGAATGAGCTTCGACTATGGCAGCAATGGCGGCGGGAGGAGCACGAACGGACTGGAACGAGCCCAGATCTGGCGTCGTCTCCATCTCCAGCGATCTCTCTCTCCGTCTCCAGCGTCACTCTCTCCGTCGTCACCAGATCTGGAAATCAGGGAAAAGTTGTTGATGGAGTAGAACCACGAATTTGTGGAAAACGATCGAATCCTGGAAAAACAGGAATAGTTATTTGTGGAGAACGAGGGATAGTGATTGTTGGAGTACTTGGAATAGAAGGAGTAGTAATTGTTGGAGTACGAGAAATAGAAGGGATAGTGATAGTGATTGGTGGAGAACCGGGAATAATGATTGGTGGAGTACCAGGGATTGGTGGAAAACCAGGAATATTTATGGGTAGAAGACCAGGGATAGTTCTTGGCGGAAAACCAGGGATAGTGATTGTTTTACTAGGAGTAGAAGGAGCAGTGATTGGTGGAATACTGGGAATAGAAGGGGTAGTGATTGGTGGAGTTCCCGGAAGAGTTATTTGTGGAGTACTAGGAATAGGAGAGATGGAAATTGGTGGAATAGGAAGAGATGATGTTGGACGACTTTGTTGCAGATAA

Coding sequence (CDS)

ATGGCGGAGCGAGGAGCACGAACGGAACGAGTTTCGTTTTTTTTTCTTGCCGGCGTGAGGAGCACGCCCGCCGTCCAGATCTCACCGTCTCTCCCTCTCACGTCGAGCCGGTGGAATGAGCTTCGACTATGGCAGCAATGGCGGCGGGAGGAGCACGAACGGACTGGAACGAGCCCAGATCTGGCGTCGTCTCCATCTCCAGCGATCTCTCTCTCCGTCTCCAGCGTCACTCTCTCCGTCGTCACCAGATCTGGAAATCAGGGAAAAGTTGTTGATGGAGTAGAACCACGAATTTGTGGAAAACGATCGAATCCTGGAAAAACAGGAATAGTTATTTGTGGAGAACGAGGGATAGTGATTGTTGGAGTACTTGGAATAGAAGGAGTAGTAATTGTTGGAGTACGAGAAATAGAAGGGATAGTGATAGTGATTGGTGGAGAACCGGGAATAATGATTGGTGGAGTACCAGGGATTGGTGGAAAACCAGGAATATTTATGGGTAGAAGACCAGGGATAGTTCTTGGCGGAAAACCAGGGATAGTGATTGTTTTACTAGGAGTAGAAGGAGCAGTGATTGGTGGAATACTGGGAATAGAAGGGGTAGTGATTGGTGGAGTTCCCGGAAGAGTTATTTGTGGAGTACTAGGAATAGGAGAGATGGAAATTGGTGGAATAGGAAGAGATGATGTTGGACGACTTTGTTGCAGATAA

Protein sequence

MAERGARTERVSFFFLAGVRSTPAVQISPSLPLTSSRWNELRLWQQWRREEHERTGTSPDLASSPSPAISLSVSSVTLSVVTRSGNQGKVVDGVEPRICGKRSNPGKTGIVICGERGIVIVGVLGIEGVVIVGVREIEGIVIVIGGEPGIMIGGVPGIGGKPGIFMGRRPGIVLGGKPGIVIVLLGVEGAVIGGILGIEGVVIGGVPGRVICGVLGIGEMEIGGIGRDDVGRLCCR
Homology
BLAST of Lcy08g002650 vs. ExPASy TrEMBL
Match: A0A3D3EVT1 (Uncharacterized protein OS=Lachnospiraceae bacterium OX=1898203 GN=DHW85_09090 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-06
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 0

Query: 85  GNQGKVVDGVEPRICGKRSNPGKTGIVICGERGIVIVGVLGIEGVVIVGVREIEGIVIVI 144
           G  G VV G+   +      PG  G+V+ G  G+V+ G+ G  G  I GV  +  + +V+
Sbjct: 48  GILGVVVPGIPGVVV-----PGMPGVVVLGMLGVVVPGIPGAVGPGIPGVVVLGILGVVV 107

Query: 145 GGEPGIMIGGVPG--IGGKPGIFMGRRPGIVLGGKPGIVIVLLGVEGAVIGGI-----LG 204
            G PG+++ G+ G  + G PG+ +    G+V+ G PG+V+  LG+ G V+ GI     LG
Sbjct: 108 PGIPGVVVRGILGVVVPGIPGVVVLGICGVVVPGIPGVVV--LGICGVVVPGIPGVVVLG 167

Query: 205 IEGVVIGGVPGRVICGVLGI 218
           + GVV+ G+PG V+ G+LG+
Sbjct: 168 MLGVVVPGMPGVVVLGMLGV 180

BLAST of Lcy08g002650 vs. ExPASy TrEMBL
Match: A0A6J1ELR6 (elastin-like OS=Cucurbita moschata OX=3662 GN=LOC111434521 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-05
Identity = 65/159 (40.88%), Postives = 86/159 (54.09%), Query Frame = 0

Query: 85  GNQGKVVDGVEPRICGKRSN--PGKTGIVICGERGIV---IVGVLGIEGVVIVGVREIEG 144
           G+ G V+ GV P I G      PG  G V+ G  GIV   + GV G  G V+ GV  I G
Sbjct: 17  GSVGTVMGGV-PGIVGTLMGGVPGSVGTVMGGVPGIVGTLMGGVSGSVGTVMGGVPGIVG 76

Query: 145 IVI-VIGGEPGIMIGGVPG-----IGGKPGIFMGRRPGIVLGGKPGIVIVLL----GVEG 204
            ++  + G  G ++GGVPG     +GG PG       G V+GG PGIV +L+    G  G
Sbjct: 77  TLMGGVPGSVGTVMGGVPGTEGTLMGGVPG-----SVGTVMGGVPGIVGMLMGGVPGSVG 136

Query: 205 AVIGGILGIEGVVIGGVP---GRVICGVLGIGEMEIGGI 226
            V+GG+ G EG ++GGVP   G V+ GV GI    +GG+
Sbjct: 137 TVMGGVPGTEGTLMGGVPGSVGTVMGGVPGIVGTLMGGV 169

BLAST of Lcy08g002650 vs. NCBI nr
Match: HCM13323.1 (hypothetical protein [Lachnospiraceae bacterium])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-05
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 0

Query: 85  GNQGKVVDGVEPRICGKRSNPGKTGIVICGERGIVIVGVLGIEGVVIVGVREIEGIVIVI 144
           G  G VV G+   +      PG  G+V+ G  G+V+ G+ G  G  I GV  +  + +V+
Sbjct: 48  GILGVVVPGIPGVVV-----PGMPGVVVLGMLGVVVPGIPGAVGPGIPGVVVLGILGVVV 107

Query: 145 GGEPGIMIGGVPG--IGGKPGIFMGRRPGIVLGGKPGIVIVLLGVEGAVIGGI-----LG 204
            G PG+++ G+ G  + G PG+ +    G+V+ G PG+V+  LG+ G V+ GI     LG
Sbjct: 108 PGIPGVVVRGILGVVVPGIPGVVVLGICGVVVPGIPGVVV--LGICGVVVPGIPGVVVLG 167

Query: 205 IEGVVIGGVPGRVICGVLGI 218
           + GVV+ G+PG V+ G+LG+
Sbjct: 168 MLGVVVPGMPGVVVLGMLGV 180

BLAST of Lcy08g002650 vs. NCBI nr
Match: XP_022927703.1 (elastin-like [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-04
Identity = 65/159 (40.88%), Postives = 86/159 (54.09%), Query Frame = 0

Query: 85  GNQGKVVDGVEPRICGKRSN--PGKTGIVICGERGIV---IVGVLGIEGVVIVGVREIEG 144
           G+ G V+ GV P I G      PG  G V+ G  GIV   + GV G  G V+ GV  I G
Sbjct: 17  GSVGTVMGGV-PGIVGTLMGGVPGSVGTVMGGVPGIVGTLMGGVSGSVGTVMGGVPGIVG 76

Query: 145 IVI-VIGGEPGIMIGGVPG-----IGGKPGIFMGRRPGIVLGGKPGIVIVLL----GVEG 204
            ++  + G  G ++GGVPG     +GG PG       G V+GG PGIV +L+    G  G
Sbjct: 77  TLMGGVPGSVGTVMGGVPGTEGTLMGGVPG-----SVGTVMGGVPGIVGMLMGGVPGSVG 136

Query: 205 AVIGGILGIEGVVIGGVP---GRVICGVLGIGEMEIGGI 226
            V+GG+ G EG ++GGVP   G V+ GV GI    +GG+
Sbjct: 137 TVMGGVPGTEGTLMGGVPGSVGTVMGGVPGIVGTLMGGV 169

BLAST of Lcy08g002650 vs. NCBI nr
Match: KAG6588808.1 (hypothetical protein SDJN03_17373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-04
Identity = 64/172 (37.21%), Postives = 92/172 (53.49%), Query Frame = 0

Query: 85  GNQGKVVDGVEPRICGKRSN-PGKTGIVICGERGIVIVGVLGIEGVVIVGVREIEGIV-I 144
           G +G ++ GV   +  +    PG  G ++ G  G V   + G+ G+V   +  + G V  
Sbjct: 6   GTEGTLMGGVPGSVGTEMGGVPGIVGTLMGGVPGSVGTEMGGVPGIVGTLMGGVPGSVGT 65

Query: 145 VIGGEPGI---MIGGVPG-----IGGKPGI---FMGRRPGIV---LGGKPGIVIVLL-GV 204
           V+GG PGI   ++GGVPG     +GG PGI    MG  PG V   +GG PGIV  L+ GV
Sbjct: 66  VMGGVPGIVGTLMGGVPGSVGAVMGGVPGIVGTLMGGVPGSVGTEMGGVPGIVGTLMGGV 125

Query: 205 EGAV---IGGILGIEGVVIGGVPGRVICGVLGIGEMEIGGIGRDDVGRLCCR 237
            G+V   +GG+ GI G + GG+ G ++ G  G  EM I G+G  ++   C R
Sbjct: 126 PGSVGTEMGGVPGIVGTLTGGIMGMMMGGTPG-REMIILGVGESEISEDCWR 176

BLAST of Lcy08g002650 vs. NCBI nr
Match: HEI41854.1 (hypothetical protein [Gemmataceae bacterium])

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-04
Identity = 37/90 (41.11%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 143 VIGGEPGIMIGGVPG--IGGKPGIFMGRRPGIVLGGKPGIVIVLLGVEGAVIGGILGI-- 202
           ++GG PG+M+GG PG  +GG PG+ MG  PG+++GG PG  +++ G  G ++GG  G+  
Sbjct: 872 MMGGFPGMMMGGFPGMMMGGFPGMMMGGFPGMMMGGFPG--MMMGGFPGMMMGGFPGMMM 931

Query: 203 ---EGVVIGGVPGRVICGVLGIGEMEIGGI 226
               G+++GG PG +I G++ +G M +GG+
Sbjct: 932 GGFPGMMMGGFPGMMIGGMMMMGGMMMGGM 959

BLAST of Lcy08g002650 vs. NCBI nr
Match: XP_036199698.1 (elastin-like [Myotis myotis])

HSP 1 Score: 55.1 bits (131), Expect = 9.7e-04
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 132 VGVREIEGIVIVIGGEPGIMIGGVPGI--GGKPGIFMGRRPGIVLGGKPGIVIVLLGVEG 191
           V VR + G  +  GG PG+  GG+PG+  GG PG+  G  PG+  GG PG+     G  G
Sbjct: 12  VSVRGLPG--VGTGGLPGVGTGGLPGVVTGGLPGVGTGGLPGVGTGGHPGV-----GTGG 71

Query: 192 AVIGGILGIEGVVIGGVPGRVICGVLGIGEMEIGGIG 227
           + + G  G+ G+V GG+PG    G+ G+G  E+ G+G
Sbjct: 72  SQVCGHRGLPGMVTGGLPGVGTGGIPGVGTGELPGVG 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A3D3EVT18.6e-0636.43Uncharacterized protein OS=Lachnospiraceae bacterium OX=1898203 GN=DHW85_09090 P... [more]
A0A6J1ELR69.5e-0540.88elastin-like OS=Cucurbita moschata OX=3662 GN=LOC111434521 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
HCM13323.11.8e-0536.43hypothetical protein [Lachnospiraceae bacterium][more]
XP_022927703.12.0e-0440.88elastin-like [Cucurbita moschata][more]
KAG6588808.12.6e-0437.21hypothetical protein SDJN03_17373, partial [Cucurbita argyrosperma subsp. sorori... [more]
HEI41854.13.3e-0441.11hypothetical protein [Gemmataceae bacterium][more]
XP_036199698.19.7e-0440.21elastin-like [Myotis myotis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g002650.1Lcy08g002650.1mRNA