Lcy08g002600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g002600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor bHLH160
Location	Chr08: 3795769 .. 3798678 (-)
RNA-Seq Expression	Lcy08g002600
Synteny	Lcy08g002600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAGAGAGAGAGAGGAGGATGAAACTCTCTCAAACCTACTTTTCCCTTCGCTCATTGCTTCCGAATGCTAGACGATCAAAGGTTTGTGAGTTTAGTTCATGAACTTTCAAGTTTGTGTCTATTTGGTCTTTAAAATTTAAAAAGTGTTTAACAGATCTCTGAACTTTCAATTTTGTGCCCAGTAGATTTCTAAACTCTAAAAGTATCTAATACTTTTTTTGACAACATGTGGGGTGGGAGATTTGAACTTCTTAACCTTAGTCAAAGGTACAAGTTTTTTATGCCGGTTAAGCTATACTTTTGTTGGCTTTAAAAATTATAATAGGTCTATGTACTTTCAATTTTGTGTCTAATATGTCTCTAACATATTAAAAAATTTAAAATTAACGGTTTTATTAGATATACAATTAATTGGACAACCCTAAAAACTTTTGTGCCTAGTATATCCGTTTGTTTTAAAAATAGTCAAGTAGGTCAAAAACCTTTTAGACCTACGCATGGGTGTCACGTACGGACGTACCCCTTTCTGCTTTAGGGTTCTACCTCTCTTATATTGTATCATTCTTTCCTTCTCTAATCCTTTTGTGCTTAGGGTTTCTGTTGAGTATCCTACATTGAAAAAATAAGGAGACCTCATAATCTTTATAATATATATACACAGACTACTCTCTTCTCGTTGCCAATTGGTTTTGAGATGGAACTCCATGTTTATCTTATGATTTGAGTTTCTGTCAAGCAGAAAAGATGGAGCTCAACAACCATAATCGACAAAGTTGTAGACTACATTCCCACACTAGAGAAAGAGATAGAGAAGCTGAAGCAAAAGAAACAGGATTTGGTAAAAGCAAAAGAAACCACCAATAATGATAAAAGAGTTGAAAATGAAGGGTTATTGGAATCTGATAATCCAACTATTTCAATCCACCAACTTAGAAGATTAGGAGAAGTGATCATCCAAATATGCATAAACATGAACCAAAGAAAAGTTATTTTGTTGTCAACTTTGATCCATAAAGCTGAAGCAGAAGGCTTGCGGATCATTGCTGCTTCGACAGTTTCTCTTTGTGATGACCATCGGATACTTACCTGCCATTTGCATCTTCAGGTATTTTTCATTTACTATTCTTAATTACAATTATTTTCCAAAACTTTTTTTTTTTTCATTTTTTTGGTTCATTTTGAGCCTTCAATCAGCTTGGACAAAATATATATATATATATATTAGAAGAAAACCCGGAGGATTTTCTAACTTTTATTAGGTTAAATTAGAAGTTTAGTTTCTAAACTTTCATGGTTGTGTCAATTTGATCCTTGAACTTTAAAAAGCGTATAAGTCTTTGAACTTTCAATTTTGTGTTTAATAGGTCTCTAAACTTTAAAAATGTCTAATAAATCCCTGAACTTTCAATTTTATGTTTAATAGGTTCCTGACCTATTCGAGATATCAATTAGATATAAAATTGATTCTTATGTCTATTGTGACACCTAAACTTCTAATTTGGTATTTAATAGGCTTGTGAATTTTAAAAAATGTCGAATAAGTCGTCAAAGACTTATTACACACAAAATTGAAAATTATGCCAAGCTACACTCATGTTGGCAATGTTATATGCTAGTATTTGTAGATATCCCGAATTGGATTGTCCTTTACCTTCATATTCTTCCTCAAGTAAAAGAAGAAATGGCAAGAAAATTACCTCAAATAAAACAACTTTCCATTTTGATTACTTTGAATATATACCTTTAATCGATAATTAATGTGTGATTTGTGCAGATGGATAGGAGTTTACAAGAAGCTATTGACTATGAATCAATATTAAGAAAAAGGGTAATCTCTTGGTTATGTTGATTCATTTACATACATACCATTATCTTAGACATCGATTAAGGAAATTTATAAATTTATTGAGTTCATTTTGAACATTTTGTTTAAATATTTTGCCTTCAAGCTTTGAAACTTTTCAACTATGTCTTTGTACTTGACATATATACAACATGCACTTGTGTTCATGTTATTAAACATCATTAATAAAATGATAATCTGACATACTTATTAGTGTAATTTGTTGTGTGTTACCCATTTCATGCTAACTAAGACAAAGTTTGATTTAAAACGAGTATGTTGTTGGTATTTATGTCTGTTGCAGCGTGATTTTGATGCATATGGCAAATGTTACCAGGTAATGTATAGTGAAAAGAGTGTAAGAGTATTTTTTGCAGATTGGTGTTCTATTTCACTTAATTACCACGAATACAATCATCCAATTTTATGTAAAGAAAAGAATCATATGATAAAATCTAAGACTAAGTTAAGAAAAAAAAATATATGTGCGAGAAATATCAAAGAGAAATATGTTAGGAATTGATTTCACTTATTAAACTAATATTCAACTAATGGAAGATTAGTTCACTTATCAAAGAGAAATATGTTAGGGTCTCTGCGTGCGATCGCATTGTCTTGCGTCTAATGTGCACTGGAACTACGCTACGCACGCGTTAGTCTACGTCACCCCTGGAATGCGCCTGGTGGCCCCATGCGCACCTCCTTGTCGTAGTGCATGCGCCCCTGCTAACCTCACAATGGCCAGCAGCCTTTCGGCCTGTTTTGCACGCCTTTGACGTCTACTTGGGTTGCTCCTTTTTGGCTCTCTTTTTCTTCCTTGAAAGCCCTCTTGCACTCTCCTATCTTGCCGAACGTGTCATGGACTTACACTTCAATGATTGGGTACACCCTCCTCCTATGTCTCTCGGGTGTGATGGGCTTCCCACACCCTTGCATAGTGCCGAGTGGTGGCATTGACAACTGCTTTAGGTGATGTCCATGCGAGACCCACCTCATGCAAGTTTAGATCCTCCTCATGGGCTGGTGTTGGCATGGATGGGGAGTGTGCCTGAGTTTGGGTGA

mRNA sequence

ATGCTAAAGAGAGAGAGAGGAGGATGAAACTCTCTCAAACCTACTTTTCCCTTCGCTCATTGCTTCCGAATGCTAGACGATCAAAGAAAAGATGGAGCTCAACAACCATAATCGACAAAGTTGTAGACTACATTCCCACACTAGAGAAAGAGATAGAGAAGCTGAAGCAAAAGAAACAGGATTTGGTAAAAGCAAAAGAAACCACCAATAATGATAAAAGAGTTGAAAATGAAGGGTTATTGGAATCTGATAATCCAACTATTTCAATCCACCAACTTAGAAGATTAGGAGAAGTGATCATCCAAATATGCATAAACATGAACCAAAGAAAAGTTATTTTGTTGTCAACTTTGATCCATAAAGCTGAAGCAGAAGGCTTGCGGATCATTGCTGCTTCGACAGTTTCTCTTTGTGATGACCATCGGATACTTACCTGCCATTTGCATCTTCAGATGGATAGGAGTTTACAAGAAGCTATTGACTATGAATCAATATTAAGAAAAAGGCGTGATTTTGATGCATATGGCAAATGTTACCAGGTGATGTCCATGCGAGACCCACCTCATGCAAGTTTAGATCCTCCTCATGGGCTGGTGTTGGCATGGATGGGGAGTGTGCCTGAGTTTGGGTGA

Coding sequence (CDS)

ATGAAACTCTCTCAAACCTACTTTTCCCTTCGCTCATTGCTTCCGAATGCTAGACGATCAAAGAAAAGATGGAGCTCAACAACCATAATCGACAAAGTTGTAGACTACATTCCCACACTAGAGAAAGAGATAGAGAAGCTGAAGCAAAAGAAACAGGATTTGGTAAAAGCAAAAGAAACCACCAATAATGATAAAAGAGTTGAAAATGAAGGGTTATTGGAATCTGATAATCCAACTATTTCAATCCACCAACTTAGAAGATTAGGAGAAGTGATCATCCAAATATGCATAAACATGAACCAAAGAAAAGTTATTTTGTTGTCAACTTTGATCCATAAAGCTGAAGCAGAAGGCTTGCGGATCATTGCTGCTTCGACAGTTTCTCTTTGTGATGACCATCGGATACTTACCTGCCATTTGCATCTTCAGATGGATAGGAGTTTACAAGAAGCTATTGACTATGAATCAATATTAAGAAAAAGGCGTGATTTTGATGCATATGGCAAATGTTACCAGGTGATGTCCATGCGAGACCCACCTCATGCAAGTTTAGATCCTCCTCATGGGCTGGTGTTGGCATGGATGGGGAGTGTGCCTGAGTTTGGGTGA

Protein sequence

MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKETTNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAEGLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKRRDFDAYGKCYQVMSMRDPPHASLDPPHGLVLAWMGSVPEFG

Homology

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BLAST of Lcy08g002600 vs. ExPASy Swiss-Prot
Match: F4I8F9 (Transcription factor bHLH160 OS=Arabidopsis thaliana OX=3702 GN=BHLH160 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 54/165 (32.73%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLP--NARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAK 60
           M+L  +Y +L +LLP  ++  SKK+WS+ +IID V+ YIP L+ E+ +L  +KQ LV+  
Sbjct: 74  MRLHASYLTLGTLLPDHSSSSSKKKWSAPSIIDNVITYIPKLQNEVGELTLRKQKLVE-- 133

Query: 61  ETTNNDKRVENEGLLESDNPTISIHQLRRLG----EVIIQICINMNQRKVILLSTLIHKA 120
                         LE   P+I    +  LG    E ++QIC+          S L+H  
Sbjct: 134 --------------LERRGPSIRAISVLELGESGYEAVVQICLKKENEDE--FSNLLHVM 193

Query: 121 EAEGLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILR 160
           E +GL +++AST  +C + R++  + H++MD    E  DY ++L+
Sbjct: 194 EVQGLSVLSASTSQVCREQRVVCYNFHVKMDEKPCEGDDYITVLK 220

[Close]

BLAST of Lcy08g002600 vs. ExPASy Swiss-Prot
Match: A2WZ60 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. indica OX=39946 GN=IRO2 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-07
Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 2   KLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKETT 61
           +L++ Y SLR+LLP+A  +KK  S  T + +V+ YIP L+K++E L++KK++L     T 
Sbjct: 83  QLNELYSSLRALLPDADHTKK-LSIPTTVSRVLKYIPELQKQVENLERKKKELTTTSTTN 142

Query: 62  NNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMN-QRKVILLSTLIHKAEAEGLR 121
                + ++ + E   P +S   +  + E+++Q+ +  N    V+ LS  I   E EGL 
Sbjct: 143 CKPGVLGSQLMSEGMAPIVSATCINDM-EIMVQVSLLSNVAGSVLPLSKCIKVLENEGLH 202

Query: 122 IIAASTVSLCDDHRILTCHL 141
            I++ST S   +    + HL
Sbjct: 203 FISSSTSSGFGNRTFYSIHL 220

[Close]

BLAST of Lcy08g002600 vs. ExPASy Swiss-Prot
Match: Q0JFZ0 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRO2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-07
Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 2   KLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKETT 61
           +L++ Y SLR+LLP+A  +K   S  T + +V+ YIP L+K++E L++KK++L     T 
Sbjct: 83  QLNELYSSLRALLPDADHTK--LSIPTTVSRVLKYIPELQKQVENLERKKKELTTTSTTN 142

Query: 62  NNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMN-QRKVILLSTLIHKAEAEGLR 121
                + ++ + E   P +S   +  + E+++Q+ +  N    V+ LS  I   E EGL 
Sbjct: 143 CKPGVLGSQLMSEGMAPIVSATCINDM-EIMVQVSLLSNVAGSVLPLSKCIKVLENEGLH 202

Query: 122 IIAASTVSLCDDHRILTCHL 141
            I++ST S   +    + HL
Sbjct: 203 FISSSTSSGFGNRTFYSIHL 219

[Close]

BLAST of Lcy08g002600 vs. ExPASy Swiss-Prot
Match: Q9FYE6 (Transcription factor bHLH101 OS=Arabidopsis thaliana OX=3702 GN=BHLH101 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 40/143 (27.97%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 2   KLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKETT 61
           KL+  Y SLR+LLP + + K++ S    + +VV YIP  ++E+++L ++K++L+K     
Sbjct: 80  KLNALYSSLRALLPLSDQ-KRKLSIPMTVARVVKYIPEQKQELQRLSRRKEELLKRISRK 139

Query: 62  NNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAEGLRI 121
            + +++ N+ +++S + + S  ++        +I + +   K   +S ++ + E  GL +
Sbjct: 140 THQEQLRNKAMMDSIDSS-SSQRIAANWLTDTEIAVQIATSKWTSVSDMLLRLEENGLNV 199

Query: 122 IAASTVSLCDDHRILTCHLHLQM 145
           I+ S+ S+    RI    LHLQM
Sbjct: 200 ISVSS-SVSSTARIFYT-LHLQM 218

[Close]

BLAST of Lcy08g002600 vs. ExPASy TrEMBL
Match: A0A1S3BLZ5 (transcription factor bHLH100 OS=Cucumis melo OX=3656 GN=LOC103491303 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43
Identity = 117/175 (66.86%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKE- 60
           ++LS +YFSLRSLLPNARRSKKRWSS TIIDKVVDYIPTL+KEIEK+ QKKQ+L+KAKE 
Sbjct: 121 LELSHSYFSLRSLLPNARRSKKRWSSGTIIDKVVDYIPTLQKEIEKMNQKKQNLIKAKER 180

Query: 61  --TTNNDKRV-----ENEGL----LESDNPTISIHQLRRLGEVIIQICINMNQRKVILLS 120
             + NN +RV     ENEGL      + NPT+SIHQL   GEVIIQICIN        LS
Sbjct: 181 IMSNNNAERVLVSVDENEGLDNQYYNNINPTVSIHQLCE-GEVIIQICINPRNSNNNKLS 240

Query: 121 TLIHKAEAEGLRIIAASTVSLC-DDHRILTCHLHLQ-MDRSLQEAIDYESILRKR 162
            LI KAE EGLRII ASTVS+   DH+ILT HLH+Q MDRSLQEA D +SI RKR
Sbjct: 241 NLIQKAEEEGLRIIGASTVSVSHHDHQILTSHLHVQMMDRSLQEAADNKSISRKR 294

[Close]

BLAST of Lcy08g002600 vs. ExPASy TrEMBL
Match: A0A6J1DXT5 (transcription factor bHLH160 OS=Momordica charantia OX=3673 GN=LOC111025515 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 5.7e-43
Identity = 105/167 (62.87%), Postives = 126/167 (75.45%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           MKLSQTYFSLRSLLPN+RRSKKRWSS+ IIDKV++YIPT+EKEIEK K KK++L+KAKE 
Sbjct: 79  MKLSQTYFSLRSLLPNSRRSKKRWSSSRIIDKVIEYIPTVEKEIEKQKHKKEELIKAKEM 138

Query: 61  ---TNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMN---QRKVILLSTLIHKA 120
               NN++RV       +   T+S H L   GEVIIQICIN     +   IL S+LI KA
Sbjct: 139 RNYNNNNERV-------TAAATVSTHPLSNSGEVIIQICINQKPAAENYCILFSSLIRKA 198

Query: 121 EAEGLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           EAEG+ II ASTVS+  DH  LTCHLH+QM+ SLQE+ DYES+LRK+
Sbjct: 199 EAEGITIIGASTVSVSGDHPTLTCHLHVQMNWSLQESADYESLLRKK 238

[Close]

BLAST of Lcy08g002600 vs. ExPASy TrEMBL
Match: A0A6J1HFM3 (transcription factor bHLH160 OS=Cucurbita moschata OX=3662 GN=LOC111463877 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-42
Identity = 101/161 (62.73%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           M+LSQ YFSLRSLLPNARRSKKRWSSTTII+KVVDYIPTL+KEIE +K+KKQ ++K K  
Sbjct: 90  MELSQLYFSLRSLLPNARRSKKRWSSTTIINKVVDYIPTLQKEIENMKEKKQKMIKEKGK 149

Query: 61  TNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAEGLR 120
           +N    V+ +  LE+DN ++ +HQ+ + GEVIIQICIN  +  +I  S LI KAE EGLR
Sbjct: 150 SNERVLVDEKEGLENDNLSVLVHQVCK-GEVIIQICIN-QRNNMITFSNLIQKAEEEGLR 209

Query: 121 IIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           II ASTV +   H  LT HLH QMD+S++E  DY+SILRKR
Sbjct: 210 IIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKR 248

[Close]

BLAST of Lcy08g002600 vs. ExPASy TrEMBL
Match: A0A6J1HVK8 (transcription factor bHLH160 OS=Cucurbita maxima OX=3661 GN=LOC111467064 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-41
Identity = 100/161 (62.11%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           M+LSQ YFSLRSLLPNARRSKKRWSSTTII+KVVDYIPTL+KEIE +K+KKQ ++K K  
Sbjct: 90  MELSQLYFSLRSLLPNARRSKKRWSSTTIINKVVDYIPTLQKEIENMKEKKQKMIKEKGK 149

Query: 61  TNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAEGLR 120
           +N    V+ +  LE+DN ++ +HQ+ + GEVIIQICI   +  +I  S LI KAE +GLR
Sbjct: 150 SNERVLVDEKEGLENDNLSVLVHQVCK-GEVIIQICIK-QRNNMINFSNLIQKAEEDGLR 209

Query: 121 IIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           II AS +S+ D H  LT HLH QMDRS++E  DY+SILRKR
Sbjct: 210 IIGASALSVSDHHPTLTSHLHFQMDRSVEEGDDYKSILRKR 248

[Close]

BLAST of Lcy08g002600 vs. ExPASy TrEMBL
Match: A0A2R6RGL8 (Transcription factor bHLH100 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06717 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-24
Identity = 73/164 (44.51%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKK---QDLVKA 60
           MKL+ +Y +LRSLLPNARRSKK+WS+  IID+V++YIP LE E+EKL  KK   Q + K 
Sbjct: 83  MKLNASYLALRSLLPNARRSKKKWSAPVIIDRVLEYIPELEDEVEKLTAKKQTIQSITKG 142

Query: 61  KETTNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAE 120
           K T N +   E EG      PT+S++++R  GEVIIQIC+  ++ +V   S L+   E E
Sbjct: 143 KRTLNQNPCSELEG------PTVSVNEVRE-GEVIIQICMARDKGEV--FSNLVENVEGE 202

Query: 121 GLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           G+ I +AST+S+C++      HLH+QM+       DY  +++ +
Sbjct: 203 GMSIASASTLSVCEERE--CHHLHIQMNGRFSLEADYIGVIKDK 235

[Close]

BLAST of Lcy08g002600 vs. NCBI nr
Match: XP_031743831.1 (transcription factor bHLH160 [Cucumis sativus] >KAE8647334.1 hypothetical protein Csa_004052 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-46
Identity = 120/173 (69.36%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           +KLS +YFSLRSLLPNARRSKKRWS+ TIIDKVVDYIPTL+KEIE + QKKQ L+KAK+ 
Sbjct: 124 LKLSHSYFSLRSLLPNARRSKKRWSAGTIIDKVVDYIPTLQKEIENMNQKKQKLIKAKKN 183

Query: 61  -TNNDKRV-----ENEGL---LESDNPTISIHQLRRLGEVIIQICIN--MNQRKVILLST 120
            +NN++RV     ENEGL     + NPT+SIHQL + GEVIIQICIN   N  K   LS 
Sbjct: 184 MSNNNERVSVSVEENEGLDQYYNNINPTVSIHQLCK-GEVIIQICINPRNNNNK---LSN 243

Query: 121 LIHKAEAEGLRIIAASTVSLCDDHRILTCHLHLQ-MDRSLQEAIDYESILRKR 162
           LI KAEAEGLRII ASTVS+  DH+ILT HLH+Q MDRSLQEA DYES+LRKR
Sbjct: 244 LIEKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKR 292

[Close]

BLAST of Lcy08g002600 vs. NCBI nr
Match: XP_038888939.1 (transcription factor bHLH160 [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-45
Identity = 112/164 (68.29%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           M+LS +YFSLRSLLPNARRSKKRWSS TIIDKVVDYIPTL+KEIE + QKKQ L+KAKE 
Sbjct: 120 MQLSHSYFSLRSLLPNARRSKKRWSSGTIIDKVVDYIPTLQKEIENMNQKKQKLIKAKEM 179

Query: 61  TNNDKRV--ENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVIL-LSTLIHKAEAE 120
           +N    +  ENEGL  ++NPT+SIHQL + GEVIIQICIN     VI+  S LI KA+AE
Sbjct: 180 SNERVLLVDENEGL--NNNPTVSIHQLCK-GEVIIQICINQRNNNVIINFSNLIQKAQAE 239

Query: 121 GLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           GL II ASTVS+  DH  L+ HLH+QMDRS+QEA DY+SILRK+
Sbjct: 240 GLCIIGASTVSVSHDHLTLSFHLHIQMDRSVQEAADYKSILRKK 280

[Close]

BLAST of Lcy08g002600 vs. NCBI nr
Match: XP_008449406.1 (PREDICTED: transcription factor bHLH100 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.3e-43
Identity = 117/175 (66.86%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKE- 60
           ++LS +YFSLRSLLPNARRSKKRWSS TIIDKVVDYIPTL+KEIEK+ QKKQ+L+KAKE 
Sbjct: 121 LELSHSYFSLRSLLPNARRSKKRWSSGTIIDKVVDYIPTLQKEIEKMNQKKQNLIKAKER 180

Query: 61  --TTNNDKRV-----ENEGL----LESDNPTISIHQLRRLGEVIIQICINMNQRKVILLS 120
             + NN +RV     ENEGL      + NPT+SIHQL   GEVIIQICIN        LS
Sbjct: 181 IMSNNNAERVLVSVDENEGLDNQYYNNINPTVSIHQLCE-GEVIIQICINPRNSNNNKLS 240

Query: 121 TLIHKAEAEGLRIIAASTVSLC-DDHRILTCHLHLQ-MDRSLQEAIDYESILRKR 162
            LI KAE EGLRII ASTVS+   DH+ILT HLH+Q MDRSLQEA D +SI RKR
Sbjct: 241 NLIQKAEEEGLRIIGASTVSVSHHDHQILTSHLHVQMMDRSLQEAADNKSISRKR 294

[Close]

BLAST of Lcy08g002600 vs. NCBI nr
Match: XP_022159073.1 (transcription factor bHLH160 [Momordica charantia])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-42
Identity = 105/167 (62.87%), Postives = 126/167 (75.45%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           MKLSQTYFSLRSLLPN+RRSKKRWSS+ IIDKV++YIPT+EKEIEK K KK++L+KAKE 
Sbjct: 79  MKLSQTYFSLRSLLPNSRRSKKRWSSSRIIDKVIEYIPTVEKEIEKQKHKKEELIKAKEM 138

Query: 61  ---TNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMN---QRKVILLSTLIHKA 120
               NN++RV       +   T+S H L   GEVIIQICIN     +   IL S+LI KA
Sbjct: 139 RNYNNNNERV-------TAAATVSTHPLSNSGEVIIQICINQKPAAENYCILFSSLIRKA 198

Query: 121 EAEGLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           EAEG+ II ASTVS+  DH  LTCHLH+QM+ SLQE+ DYES+LRK+
Sbjct: 199 EAEGITIIGASTVSVSGDHPTLTCHLHVQMNWSLQESADYESLLRKK 238

[Close]

BLAST of Lcy08g002600 vs. NCBI nr
Match: XP_023553728.1 (transcription factor bHLH160 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-42
Identity = 103/161 (63.98%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKET 60
           M+LSQ YFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTL+KEIE +K+KKQ ++K K  
Sbjct: 90  MELSQLYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLQKEIENMKEKKQKMIKEKGK 149

Query: 61  TNNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAEGLR 120
           +N    V+ +  LE+DN ++ +HQ+ + GEVIIQICIN  +  +I  S LI KAE EGLR
Sbjct: 150 SNERVLVDEKEGLENDNLSVLVHQVCK-GEVIIQICIN-QRNNMIKFSNLIQKAEEEGLR 209

Query: 121 IIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILRKR 162
           II ASTV +   H  LT HLH QMDRS++E  DY+SILRKR
Sbjct: 210 IIGASTVCVSPHHPTLTSHLHFQMDRSVEEGDDYKSILRKR 248

[Close]

BLAST of Lcy08g002600 vs. TAIR 10
Match: AT1G71200.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 54/165 (32.73%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 1   MKLSQTYFSLRSLLP--NARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAK 60
           M+L  +Y +L +LLP  ++  SKK+WS+ +IID V+ YIP L+ E+ +L  +KQ LV+  
Sbjct: 74  MRLHASYLTLGTLLPDHSSSSSKKKWSAPSIIDNVITYIPKLQNEVGELTLRKQKLVE-- 133

Query: 61  ETTNNDKRVENEGLLESDNPTISIHQLRRLG----EVIIQICINMNQRKVILLSTLIHKA 120
                         LE   P+I    +  LG    E ++QIC+          S L+H  
Sbjct: 134 --------------LERRGPSIRAISVLELGESGYEAVVQICLKKENEDE--FSNLLHVM 193

Query: 121 EAEGLRIIAASTVSLCDDHRILTCHLHLQMDRSLQEAIDYESILR 160
           E +GL +++AST  +C + R++  + H++MD    E  DY ++L+
Sbjct: 194 EVQGLSVLSASTSQVCREQRVVCYNFHVKMDEKPCEGDDYITVLK 220

[Close]

BLAST of Lcy08g002600 vs. TAIR 10
Match: AT5G04150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-05
Identity = 40/143 (27.97%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 2   KLSQTYFSLRSLLPNARRSKKRWSSTTIIDKVVDYIPTLEKEIEKLKQKKQDLVKAKETT 61
           KL+  Y SLR+LLP + + K++ S    + +VV YIP  ++E+++L ++K++L+K     
Sbjct: 80  KLNALYSSLRALLPLSDQ-KRKLSIPMTVARVVKYIPEQKQELQRLSRRKEELLKRISRK 139

Query: 62  NNDKRVENEGLLESDNPTISIHQLRRLGEVIIQICINMNQRKVILLSTLIHKAEAEGLRI 121
            + +++ N+ +++S + + S  ++        +I + +   K   +S ++ + E  GL +
Sbjct: 140 THQEQLRNKAMMDSIDSS-SSQRIAANWLTDTEIAVQIATSKWTSVSDMLLRLEENGLNV 199

Query: 122 IAASTVSLCDDHRILTCHLHLQM 145
           I+ S+ S+    RI    LHLQM
Sbjct: 200 ISVSS-SVSSTARIFYT-LHLQM 218

The following BLAST results are available for this feature:

BLAST of Lcy08g002600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I8F9	2.2e-15	32.73	Transcription factor bHLH160 OS=Arabidopsis thaliana OX=3702 GN=BHLH160 PE=3 SV=...	[more]
A2WZ60	2.2e-07	32.14	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. indica OX=399...	[more]
Q0JFZ0	8.3e-07	31.43	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FYE6	1.7e-04	27.97	Transcription factor bHLH101 OS=Arabidopsis thaliana OX=3702 GN=BHLH101 PE=1 SV=...	[more]

BLAST of Lcy08g002600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLZ5	2.6e-43	66.86	transcription factor bHLH100 OS=Cucumis melo OX=3656 GN=LOC103491303 PE=4 SV=1	[more]
A0A6J1DXT5	5.7e-43	62.87	transcription factor bHLH160 OS=Momordica charantia OX=3673 GN=LOC111025515 PE=4...	[more]
A0A6J1HFM3	6.3e-42	62.73	transcription factor bHLH160 OS=Cucurbita moschata OX=3662 GN=LOC111463877 PE=4 ...	[more]
A0A6J1HVK8	1.8e-41	62.11	transcription factor bHLH160 OS=Cucurbita maxima OX=3661 GN=LOC111467064 PE=4 SV...	[more]
A0A2R6RGL8	4.6e-24	44.51	Transcription factor bHLH100 like OS=Actinidia chinensis var. chinensis OX=15908...	[more]

BLAST of Lcy08g002600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743831.1	3.9e-46	69.36	transcription factor bHLH160 [Cucumis sativus] >KAE8647334.1 hypothetical protei...	[more]
XP_038888939.1	1.5e-45	68.29	transcription factor bHLH160 [Benincasa hispida]	[more]
XP_008449406.1	5.3e-43	66.86	PREDICTED: transcription factor bHLH100 [Cucumis melo]	[more]
XP_022159073.1	1.2e-42	62.87	transcription factor bHLH160 [Momordica charantia]	[more]
XP_023553728.1	2.0e-42	63.98	transcription factor bHLH160 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy08g002600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71200.1	1.6e-16	32.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G04150.1	1.2e-05	27.97	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..64
None	No IPR available	PANTHER	PTHR13935:SF104	TRANSCRIPTION FACTOR BHLH160	coord: 1..157
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 1..70 e-value: 5.8E-8 score: 34.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 2..55
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 1..157
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..40 score: 8.701928

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g002600.1	Lcy08g002600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity