Lcy08g000980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g000980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type domain-containing protein
Location	Chr08: 1421954 .. 1422703 (-)
RNA-Seq Expression	Lcy08g000980
Synteny	Lcy08g000980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACGAATCATCAATCTTTGTCGGGCTTCTAACATCGGTATGTCAGTAAAAATTAAACCTCCAACTTCAAGACCTCAACAAGTTCAAACTCAAAACTCTTCATCGTTGGTCGAAGAAATCAACCTCAAATTCAAAGTCCAACTCAAATGGCATCAATTCCGAGTAGCCCAAGAAGGCAACTCGAATGCAACAACGTTGGTTGGTCAATACACAACTCGAAGACTTCCCTTAGTAGCTTACCGACTTCCTATTGCCATCTTCAACCATGACGACGAGACTCTGACACAATATCTGTCGTGGCAACTCGAAAGGTACGACGACATCATTAACATCCAAATTGTAGCTGAGGAGATATTAAAACATTGGGTTAAAGTCAGAGAGGAAGGGAATTCGAGTGTGTTTGAGAAAATTTATCCTCTTCAAGTTACGATGGAGTTCTGTAATTTTGAGATGCATTATGATGCAAGACAACGACGACCATCATCGATGATTGGAAATGTGAATTTCGACAGGATGGTTCCGACGAGAGAAGATGCTATGGAGAAGATGCTGAAGAGAGTGGAAATTGGTGATGATGAAAGTTGTTGTGTGATTTGCTTGGAAGAGATGACCAAAAAAGAGGAAGAAAAGATTGTGATAATGGAAATGCCTTGCTTGCATTTGTTTCATGAAGAATGTATAAAGAAGTGGTTGAAAACCAGTCATTGTTGTCCAACTTGTAGATTTTCAATGCCCACAAAATAA

mRNA sequence

ATGGCGGAACGAATCATCAATCTTTGTCGGGCTTCTAACATCGGTATGTCAGTAAAAATTAAACCTCCAACTTCAAGACCTCAACAAGTTCAAACTCAAAACTCTTCATCGTTGGTCGAAGAAATCAACCTCAAATTCAAAGTCCAACTCAAATGGCATCAATTCCGAGTAGCCCAAGAAGGCAACTCGAATGCAACAACGTTGGTTGGTCAATACACAACTCGAAGACTTCCCTTAGTAGCTTACCGACTTCCTATTGCCATCTTCAACCATGACGACGAGACTCTGACACAATATCTGTCGTGGCAACTCGAAAGGTACGACGACATCATTAACATCCAAATTGTAGCTGAGGAGATATTAAAACATTGGGTTAAAGTCAGAGAGGAAGGGAATTCGAGTGTGTTTGAGAAAATTTATCCTCTTCAAGTTACGATGGAGTTCTGTAATTTTGAGATGCATTATGATGCAAGACAACGACGACCATCATCGATGATTGGAAATGTGAATTTCGACAGGATGGTTCCGACGAGAGAAGATGCTATGGAGAAGATGCTGAAGAGAGTGGAAATTGGTGATGATGAAAGTTGTTGTGTGATTTGCTTGGAAGAGATGACCAAAAAAGAGGAAGAAAAGATTGTGATAATGGAAATGCCTTGCTTGCATTTGTTTCATGAAGAATGTATAAAGAAGTGGTTGAAAACCAGTCATTGTTGTCCAACTTGTAGATTTTCAATGCCCACAAAATAA

Coding sequence (CDS)

ATGGCGGAACGAATCATCAATCTTTGTCGGGCTTCTAACATCGGTATGTCAGTAAAAATTAAACCTCCAACTTCAAGACCTCAACAAGTTCAAACTCAAAACTCTTCATCGTTGGTCGAAGAAATCAACCTCAAATTCAAAGTCCAACTCAAATGGCATCAATTCCGAGTAGCCCAAGAAGGCAACTCGAATGCAACAACGTTGGTTGGTCAATACACAACTCGAAGACTTCCCTTAGTAGCTTACCGACTTCCTATTGCCATCTTCAACCATGACGACGAGACTCTGACACAATATCTGTCGTGGCAACTCGAAAGGTACGACGACATCATTAACATCCAAATTGTAGCTGAGGAGATATTAAAACATTGGGTTAAAGTCAGAGAGGAAGGGAATTCGAGTGTGTTTGAGAAAATTTATCCTCTTCAAGTTACGATGGAGTTCTGTAATTTTGAGATGCATTATGATGCAAGACAACGACGACCATCATCGATGATTGGAAATGTGAATTTCGACAGGATGGTTCCGACGAGAGAAGATGCTATGGAGAAGATGCTGAAGAGAGTGGAAATTGGTGATGATGAAAGTTGTTGTGTGATTTGCTTGGAAGAGATGACCAAAAAAGAGGAAGAAAAGATTGTGATAATGGAAATGCCTTGCTTGCATTTGTTTCATGAAGAATGTATAAAGAAGTGGTTGAAAACCAGTCATTGTTGTCCAACTTGTAGATTTTCAATGCCCACAAAATAA

Protein sequence

MAERIINLCRASNIGMSVKIKPPTSRPQQVQTQNSSSLVEEINLKFKVQLKWHQFRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQIVAEEILKHWVKVREEGNSSVFEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGNVNFDRMVPTREDAMEKMLKRVEIGDDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTSHCCPTCRFSMPTK

Homology

[Close]

BLAST of Lcy08g000980 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 176 PTREDAMEKMLKRVEIGD----DESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKK 235
           P  + A+E  L RVEI D     E+ C +C E    + E +    EMPC HLFH++CI  
Sbjct: 174 PASKSAIES-LPRVEISDCHIGSEANCAVCTEIFETETEAR----EMPCKHLFHDDCIVP 233

Query: 236 WLKTSHCCPTCRFSMPTK 250
           WL   + CP CRF +P++
Sbjct: 234 WLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Lcy08g000980 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 189 VEIGDDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTSHCCPTCRFSMP 248
           VEI   E  CVICLEE   +E     + EMPC H FH  CI+KWL     CP CR+ MP
Sbjct: 104 VEIDGCEGECVICLEEWKSEE----TVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMP 158

[Close]

BLAST of Lcy08g000980 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07
Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 176 PTREDAMEKMLKRVEIGD----DESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKK 235
           P  + A+E  L RVEI D     E+ C +C E      E  I   EMPC H+FH +CI  
Sbjct: 190 PASKSAIES-LPRVEISDCHTKAEANCAVCTEVF----EAGIEGREMPCKHIFHGDCIVP 249

Query: 236 WLKTSHCCPTCRFSMPT 249
           WL   + CP CRF +P+
Sbjct: 250 WLSIRNSCPVCRFELPS 261

[Close]

BLAST of Lcy08g000980 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07
Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 176 PTREDAMEKMLKRVEIGDD-ESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLK 235
           P  + A+E + + V  G   E  C +CL E     EE+   +EMPC HLFH  CI  WL 
Sbjct: 53  PAAKTAVENLPRTVIRGSQAELKCPVCLLEF----EEEETAIEMPCHHLFHSNCILPWLS 112

Query: 236 TSHCCPTCRFSMPT 249
            ++ CP CR  +PT
Sbjct: 113 KTNSCPLCRHELPT 122

[Close]

BLAST of Lcy08g000980 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 176 PTREDAMEKMLKRVEIGDD-ESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLK 235
           P  +  +E + + V  G   E  C +CL E     EE+   +EMPC HLFH  CI  WL 
Sbjct: 53  PAAKTVVENLPRTVIRGSQAELKCPVCLLEF----EEEETAIEMPCHHLFHSSCILPWLS 112

Query: 236 TSHCCPTCRFSMPT 249
            ++ CP CR+ +PT
Sbjct: 113 KTNSCPLCRYELPT 122

[Close]

BLAST of Lcy08g000980 vs. ExPASy TrEMBL
Match: A0A5D3C4K6 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001670 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 8.9e-54
Identity = 127/267 (47.57%), Postives = 176/267 (65.92%), Query Frame = 0


Query: 1   MAERIINLCR---ASNIGMSVKIKPPTSRPQ---QVQTQNSSSLVEEINLKFKVQLKWHQ 60
           MAE I N+CR    S +GMS++I  P  R Q   Q+   +S +LVE+I LKFKVQLK   
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQTSSPTLVEQICLKFKVQLKCQH 60

Query: 61  FRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQ 120
           F+V + GN ++TTLV ++   +     ++LPI+IF H D+TL + L  + + Y DIINI+
Sbjct: 61  FQVWEGGNGHSTTLVREHIRSQHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIINIE 120

Query: 121 IVAEEILKHWV-KVRE----EGNSSV-FEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGN 180
           ++A EI+KHWV KV E    E NS+V F+KIYPL++ +     +M    + R     +  
Sbjct: 121 LLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPR-----LAM 180

Query: 181 VNFDRMVPTREDAMEKMLKRVE------IGDDESC-CVICLEEMTKKEE-EKIVIMEMPC 240
           ++   MVPT + A+E MLKRVE       GDDES  CV+CLEE++K+E+  +  +++MPC
Sbjct: 181 IDQPLMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPC 240

Query: 241 LHLFHEECIKKWLKTSHCCPTCRFSMP 248
           LH+FHEECI+KWLKTSH CPTCRFSMP
Sbjct: 241 LHMFHEECIRKWLKTSHYCPTCRFSMP 262

[Close]

BLAST of Lcy08g000980 vs. ExPASy TrEMBL
Match: E5GCQ3 (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 8.9e-54
Identity = 127/267 (47.57%), Postives = 176/267 (65.92%), Query Frame = 0


Query: 1   MAERIINLCR---ASNIGMSVKIKPPTSRPQ---QVQTQNSSSLVEEINLKFKVQLKWHQ 60
           MAE I N+CR    S +GMS++I  P  R Q   Q+   +S +LVE+I LKFKVQLK   
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQTSSPTLVEQICLKFKVQLKCQH 60

Query: 61  FRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQ 120
           F+V + GN ++TTLV ++   +     ++LPI+IF H D+TL + L  + + Y DIINI+
Sbjct: 61  FQVWEGGNGHSTTLVREHIRSQHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIINIE 120

Query: 121 IVAEEILKHWV-KVRE----EGNSSV-FEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGN 180
           ++A EI+KHWV KV E    E NS+V F+KIYPL++ +     +M    + R     +  
Sbjct: 121 LLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPR-----LAM 180

Query: 181 VNFDRMVPTREDAMEKMLKRVE------IGDDESC-CVICLEEMTKKEE-EKIVIMEMPC 240
           ++   MVPT + A+E MLKRVE       GDDES  CV+CLEE++K+E+  +  +++MPC
Sbjct: 181 IDQPLMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPC 240

Query: 241 LHLFHEECIKKWLKTSHCCPTCRFSMP 248
           LH+FHEECI+KWLKTSH CPTCRFSMP
Sbjct: 241 LHMFHEECIRKWLKTSHYCPTCRFSMP 262

[Close]

BLAST of Lcy08g000980 vs. ExPASy TrEMBL
Match: A0A0A0K7L0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.9e-52
Identity = 127/267 (47.57%), Postives = 179/267 (67.04%), Query Frame = 0


Query: 1   MAERIINLCR---ASNIGMSVKIKPPTSRPQ---QVQT-QNSSSLVEEINLKFKVQLK-W 60
           MAE+I   CR    S IGMS++I  P  R Q   Q++T  NS +LV++I+L FKV++K  
Sbjct: 1   MAEQIFGPCRYGSGSYIGMSLRITDPDLRHQPQSQIRTPPNSPTLVKQIDLNFKVEVKCQ 60

Query: 61  HQFRVAQEGNSN-ATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDII 120
           H F+  + GNS  AT L+ ++ +   PL   +LP++IF H D+TL + L  + + Y  II
Sbjct: 61  HYFQAGEGGNSTFATALLSEHISSHHPLPTLQLPVSIFKHGDKTLKRLLFREFQIYRAII 120

Query: 121 NIQIVAEEILKHWVKVREEGNSS--VFEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGNV 180
           NI++V +EI+KHWVK  +E NS+  VFE+IYPL++T+E   ++M +   Q  P  ++ + 
Sbjct: 121 NIELVVDEIIKHWVKKVDEENSTSQVFEEIYPLEITIELLVYQMIHAIDQ--PHEIMMDQ 180

Query: 181 NFDRMVPTREDAMEKMLKRVE------IGDDESC-CVICLEEMTK-KEEEKIVIMEMPCL 240
               MVPT E AME MLK+VE       GD++S  CVICLEE++K K+  + V+++MPCL
Sbjct: 181 PQVMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVICLEEISKEKKGSEAVVLQMPCL 240

Query: 241 HLFHEECIKKWLKTSHCCPTCRFSMPT 249
           H+FHEECI+KWLK SH CPTCRFSMPT
Sbjct: 241 HMFHEECIRKWLKRSHYCPTCRFSMPT 265

[Close]

BLAST of Lcy08g000980 vs. ExPASy TrEMBL
Match: A0A5A7SPE2 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001670 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-49
Identity = 119/269 (44.24%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 1   MAERIINLCR-ASNIGMSVKIKPPTSRPQQVQ-----TQNSSSLVEEINLKFKVQLKWHQ 60
           MA +I N+CR    +GMS++I    +   + +      QNSS  V+ I+L FKVQLK   
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 61  FRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQ 120
           F V ++G +  T+ + ++T+R  PL  Y+LPI+IF H D+ L QYL  +   Y + INI 
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINIT 120

Query: 121 IVAEEILKHWVK--------VREEGNS---SVFEKIYPLQVTMEFCNFEMHYDARQRRPS 180
           +VA+ +++HWVK         +EE N+   +VF+KIYPL++T+E    + + +       
Sbjct: 121 LVADRLIQHWVKRVEEDDHEYQEENNNHDFNVFQKIYPLEITLEMQIIQRYVE----ESP 180

Query: 181 SMIGNVNFDRMVPTREDAMEKMLKRVEIG-DDESC-CVICLEEMTKKEEEKI--VIMEMP 240
            MI       MVPT + A+E ML+RVE   DDE   CVICLEE++ KEEE+    +++MP
Sbjct: 181 IMI-------MVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKEEEETEKSVLQMP 240

Query: 241 CLHLFHEECIKKWLKTSHCCPTCRFSMPT 249
           CLH+FH ECI KWLKTSH CPTCRFSMPT
Sbjct: 241 CLHMFHGECINKWLKTSHYCPTCRFSMPT 258

[Close]

BLAST of Lcy08g000980 vs. ExPASy TrEMBL
Match: A0A5D3C6G9 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001680 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 8.6e-49
Identity = 119/265 (44.91%), Postives = 174/265 (65.66%), Query Frame = 0


Query: 1   MAERIINLCRASN--IGMSVKIKPPTSR---PQ-QVQTQ-NSSSLVEEINLKFKVQLKWH 60
           MAE+ ++ C ++   +GMS++I  P  R   PQ Q+QTQ NS +LV++I+L FK+Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  QFRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINI 120
            F   +EG++ ATTL+ ++   +    A +LPI+IF   D+TL + L  + + +  I+N+
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQPTFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVNV 120

Query: 121 QIVAEEILKHWV-KVRE--EGNSSVFEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGNVN 180
           ++V +EI+KHW+ KV E  E NS VF +IYPL++ +E     M   A   +P  ++    
Sbjct: 121 ELVVDEIIKHWIRKVEEDQENNSRVFAEIYPLEIRIELLVCRM-IPAIIDQPQEVM---- 180

Query: 181 FDRMVPTREDAMEKMLKRVE-------IGDDESCCVICLEEMTKKEEEK-IVIMEMPCLH 240
              MVPT ++AME MLKRVE       +GDD   CVICLE++ K+E+    V+++MPCLH
Sbjct: 181 ---MVPTSDNAMESMLKRVENNEELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLH 240

Query: 241 LFHEECIKKWLKTSHCCPTCRFSMP 248
           +FHEECI+KWLKTSH CPTCRFSMP
Sbjct: 241 MFHEECIRKWLKTSHFCPTCRFSMP 257

[Close]

BLAST of Lcy08g000980 vs. NCBI nr
Match: ADN34252.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo] >KAA0031412.1 putative zinc finger protein [Cucumis melo var. makuwa] >TYK06863.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-53
Identity = 127/267 (47.57%), Postives = 176/267 (65.92%), Query Frame = 0


Query: 1   MAERIINLCR---ASNIGMSVKIKPPTSRPQ---QVQTQNSSSLVEEINLKFKVQLKWHQ 60
           MAE I N+CR    S +GMS++I  P  R Q   Q+   +S +LVE+I LKFKVQLK   
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQTSSPTLVEQICLKFKVQLKCQH 60

Query: 61  FRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQ 120
           F+V + GN ++TTLV ++   +     ++LPI+IF H D+TL + L  + + Y DIINI+
Sbjct: 61  FQVWEGGNGHSTTLVREHIRSQHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIINIE 120

Query: 121 IVAEEILKHWV-KVRE----EGNSSV-FEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGN 180
           ++A EI+KHWV KV E    E NS+V F+KIYPL++ +     +M    + R     +  
Sbjct: 121 LLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPR-----LAM 180

Query: 181 VNFDRMVPTREDAMEKMLKRVE------IGDDESC-CVICLEEMTKKEE-EKIVIMEMPC 240
           ++   MVPT + A+E MLKRVE       GDDES  CV+CLEE++K+E+  +  +++MPC
Sbjct: 181 IDQPLMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPC 240

Query: 241 LHLFHEECIKKWLKTSHCCPTCRFSMP 248
           LH+FHEECI+KWLKTSH CPTCRFSMP
Sbjct: 241 LHMFHEECIRKWLKTSHYCPTCRFSMP 262

[Close]

BLAST of Lcy08g000980 vs. NCBI nr
Match: KAA0031411.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 8.0e-49
Identity = 119/269 (44.24%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 1   MAERIINLCR-ASNIGMSVKIKPPTSRPQQVQ-----TQNSSSLVEEINLKFKVQLKWHQ 60
           MA +I N+CR    +GMS++I    +   + +      QNSS  V+ I+L FKVQLK   
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 61  FRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQ 120
           F V ++G +  T+ + ++T+R  PL  Y+LPI+IF H D+ L QYL  +   Y + INI 
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINIT 120

Query: 121 IVAEEILKHWVK--------VREEGNS---SVFEKIYPLQVTMEFCNFEMHYDARQRRPS 180
           +VA+ +++HWVK         +EE N+   +VF+KIYPL++T+E    + + +       
Sbjct: 121 LVADRLIQHWVKRVEEDDHEYQEENNNHDFNVFQKIYPLEITLEMQIIQRYVE----ESP 180

Query: 181 SMIGNVNFDRMVPTREDAMEKMLKRVEIG-DDESC-CVICLEEMTKKEEEKI--VIMEMP 240
            MI       MVPT + A+E ML+RVE   DDE   CVICLEE++ KEEE+    +++MP
Sbjct: 181 IMI-------MVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKEEEETEKSVLQMP 240

Query: 241 CLHLFHEECIKKWLKTSHCCPTCRFSMPT 249
           CLH+FH ECI KWLKTSH CPTCRFSMPT
Sbjct: 241 CLHMFHGECINKWLKTSHYCPTCRFSMPT 258

[Close]

BLAST of Lcy08g000980 vs. NCBI nr
Match: ADN34253.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo] >TYK06864.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-48
Identity = 119/265 (44.91%), Postives = 174/265 (65.66%), Query Frame = 0


Query: 1   MAERIINLCRASN--IGMSVKIKPPTSR---PQ-QVQTQ-NSSSLVEEINLKFKVQLKWH 60
           MAE+ ++ C ++   +GMS++I  P  R   PQ Q+QTQ NS +LV++I+L FK+Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  QFRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINI 120
            F   +EG++ ATTL+ ++   +    A +LPI+IF   D+TL + L  + + +  I+N+
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQPTFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVNV 120

Query: 121 QIVAEEILKHWV-KVRE--EGNSSVFEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGNVN 180
           ++V +EI+KHW+ KV E  E NS VF +IYPL++ +E     M   A   +P  ++    
Sbjct: 121 ELVVDEIIKHWIRKVEEDQENNSRVFAEIYPLEIRIELLVCRM-IPAIIDQPQEVM---- 180

Query: 181 FDRMVPTREDAMEKMLKRVE-------IGDDESCCVICLEEMTKKEEEK-IVIMEMPCLH 240
              MVPT ++AME MLKRVE       +GDD   CVICLE++ K+E+    V+++MPCLH
Sbjct: 181 ---MVPTSDNAMESMLKRVENNEELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLH 240

Query: 241 LFHEECIKKWLKTSHCCPTCRFSMP 248
           +FHEECI+KWLKTSH CPTCRFSMP
Sbjct: 241 MFHEECIRKWLKTSHFCPTCRFSMP 257

[Close]

BLAST of Lcy08g000980 vs. NCBI nr
Match: KAA0031413.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 6.8e-48
Identity = 118/265 (44.53%), Postives = 174/265 (65.66%), Query Frame = 0


Query: 1   MAERIINLCRASN--IGMSVKIKPPTSR---PQ-QVQTQ-NSSSLVEEINLKFKVQLKWH 60
           MAE+ ++ C ++   +GMS++I  P  R   PQ Q+QTQ NS +LV++I+L FK+Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  QFRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINI 120
            F   +EG++ ATTL+ ++   +    A +LPI+IF   D+TL + L  + + +  I+N+
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQPTFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVNV 120

Query: 121 QIVAEEILKHWV-KVRE--EGNSSVFEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGNVN 180
           ++V +EI+KHW+ KV E  E +S VF +IYPL++ +E     M   A   +P  ++    
Sbjct: 121 ELVVDEIIKHWIRKVEEDQENSSRVFAEIYPLEIRIELLVCRM-IPAIIDQPQEVM---- 180

Query: 181 FDRMVPTREDAMEKMLKRVE-------IGDDESCCVICLEEMTKKEEEK-IVIMEMPCLH 240
              MVPT ++AME MLKRVE       +GDD   CVICLE++ K+E+    V+++MPCLH
Sbjct: 181 ---MVPTSDNAMESMLKRVENNKELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLH 240

Query: 241 LFHEECIKKWLKTSHCCPTCRFSMP 248
           +FHEECI+KWLKTSH CPTCRFSMP
Sbjct: 241 MFHEECIRKWLKTSHFCPTCRFSMP 257

[Close]

BLAST of Lcy08g000980 vs. NCBI nr
Match: TYK06862.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 6.8e-48
Identity = 118/269 (43.87%), Postives = 166/269 (61.71%), Query Frame = 0


Query: 1   MAERIINLCR-ASNIGMSVKIKPPTSRPQQVQ-----TQNSSSLVEEINLKFKVQLKWHQ 60
           MA +I N+CR    +GMS++I    +   + +      QNSS  V+ I+L FKVQLK   
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 61  FRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQ 120
           F V ++G +  T+ + ++T+R  PL  Y+LPI+IF H D+ L QYL  +   Y + IN  
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINTT 120

Query: 121 IVAEEILKHWVK--------VREEGNS---SVFEKIYPLQVTMEFCNFEMHYDARQRRPS 180
           +VA+ +++HWVK         +EE N+   +VF+KIYPL++T+E    + + +       
Sbjct: 121 LVADRLIQHWVKRVEEDDHEHQEENNNHDFNVFQKIYPLEITLEMRIIQRYVE----ESP 180

Query: 181 SMIGNVNFDRMVPTREDAMEKMLKRVEIG-DDESC-CVICLEEMTKKEEEKI--VIMEMP 240
            MI       MVPT + A+E ML+RVE   DDE   CVICLEE++ KEEE+    +++MP
Sbjct: 181 IMI-------MVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKEEEESEKSVLQMP 240

Query: 241 CLHLFHEECIKKWLKTSHCCPTCRFSMPT 249
           CLH+FH ECI KWLKTSH CPTCRFSMPT
Sbjct: 241 CLHMFHGECINKWLKTSHYCPTCRFSMPT 258

[Close]

BLAST of Lcy08g000980 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-10
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 176 PTREDAMEKMLKRVEIGD----DESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKK 235
           P  + A+E  L RVEI D     E+ C +C E    + E +    EMPC HLFH++CI  
Sbjct: 174 PASKSAIES-LPRVEISDCHIGSEANCAVCTEIFETETEAR----EMPCKHLFHDDCIVP 233

Query: 236 WLKTSHCCPTCRFSMPTK 250
           WL   + CP CRF +P++
Sbjct: 234 WLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Lcy08g000980 vs. TAIR 10
Match: AT5G60820.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-09
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 177 TREDAMEKMLKRVEIGDDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTS 236
           + ED ME         DD  CC +C EEM   +E    + E+PC H +H ECI  WL   
Sbjct: 358 SNEDVMEN-------DDDAVCCAVCKEEMIVGKE----VAELPCRHKYHSECIVPWLGIR 417

Query: 237 HCCPTCRFSMPT 249
           + CP CRF +P+
Sbjct: 418 NTCPVCRFELPS 418

[Close]

BLAST of Lcy08g000980 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 189 VEIGDDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTSHCCPTCRFSMP 248
           VEI   E  CVICLEE   +E     + EMPC H FH  CI+KWL     CP CR+ MP
Sbjct: 104 VEIDGCEGECVICLEEWKSEE----TVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMP 158

[Close]

BLAST of Lcy08g000980 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-09
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 193 DDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTSHCCPTCRFSM--PTK 250
           +D+  C +CLE+   KE     +M  PC H+FHEECI  WLKT   CP CRF +  PTK
Sbjct: 139 EDDKRCSVCLEDFEPKE----TVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVILKPTK 193

[Close]

BLAST of Lcy08g000980 vs. TAIR 10
Match: AT3G58720.2 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-09
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 193 DDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTSHCCPTCRFSM--PTK 250
           +D+  C +CLE+   KE     +M  PC H+FHEECI  WLKT   CP CRF +  PTK
Sbjct: 167 EDDKRCSVCLEDFEPKE----TVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVILKPTK 221

The following BLAST results are available for this feature:

BLAST of Lcy08g000980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T5	1.1e-08	41.03	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
Q9LQX2	2.4e-08	50.85	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
Q9SNB6	4.6e-07	41.56	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q3T0W3	4.6e-07	40.54	E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1	[more]
Q9P0P0	4.6e-07	39.19	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]

BLAST of Lcy08g000980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4K6	8.9e-54	47.57	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCQ3	8.9e-54	47.57	Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0K7L0	2.9e-52	47.57	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 P...	[more]
A0A5A7SPE2	3.9e-49	44.24	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3C6G9	8.6e-49	44.91	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Lcy08g000980 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34252.1	1.8e-53	47.57	hypothetical zinc finger protein [Cucumis melo subsp. melo] >KAA0031412.1 putati...	[more]
KAA0031411.1	8.0e-49	44.24	putative zinc finger protein [Cucumis melo var. makuwa]	[more]
ADN34253.1	1.8e-48	44.91	hypothetical zinc finger protein [Cucumis melo subsp. melo] >TYK06864.1 putative...	[more]
KAA0031413.1	6.8e-48	44.53	putative zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK06862.1	6.8e-48	43.87	putative zinc finger protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy08g000980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59550.1	7.8e-10	41.03	zinc finger (C3HC4-type RING finger) family protein	[more]
AT5G60820.1	1.0e-09	40.28	RING/U-box superfamily protein	[more]
AT1G26800.1	1.7e-09	50.85	RING/U-box superfamily protein	[more]
AT3G58720.1	2.3e-09	49.15	RING/U-box superfamily protein	[more]
AT3G58720.2	2.3e-09	49.15	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 198..242 e-value: 7.7E-7 score: 38.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 198..243 e-value: 1.2E-10 score: 41.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 198..243 score: 12.917115
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 197..243 e-value: 0.0038 score: 10.8
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 167..249 e-value: 2.3E-17 score: 64.4
None	No IPR available	PANTHER	PTHR15710:SF77	OS07G0631200 PROTEIN	coord: 116..248
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 116..248
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 190..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g000980.1	Lcy08g000980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process
molecular_function	GO:0008270	zinc ion binding