Lcy08g000550 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g000550
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	periaxin-like
Location	Chr08: 867093 .. 868284 (-)
RNA-Seq Expression	Lcy08g000550
Synteny	Lcy08g000550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTCTCCACTCCTCTACCATCGTATACTCTCTCGTATTAAGTGCTTTTATGTTAATGAGCTTCGATTCTTTGATCATGGTTGTAAGCGCAAGACATCTTTTAGAGACGCCATTACCTAAGGTACCCGAAGAGCATCCAAATTCAGAAATACCCACTTTGCCAAAGCCTGAGCTTCCTCCATTACCGAAGGTTGAGTTGCCCCCATTGCCTCATTTTCCACCATTGGAAAAGCCGAAACTGCCTGAATTGCCAAAGCCTGAATTTCTTAAGTTGCCTAAATTACCGAATGTGCCTAACTTGAGATTCCCAAATTACCAGAATTGCCAAACGTGCCTAAACGAGTACTCCCTAAGTTACCTGAAATGTCACCCCTTCCAAAGCCTGTTCTACCTACTCTTCCAAAGGACATACCTATCCCTTCGTTCAACCCACCACACACAACCACTACCAATCCTTGAATATATAGCATATATTCAACTTTGTTCTACAATTGTTGAATTAAATATACATTCATACACGACTGATCCGAAGCTATATTTGTCTTTTTTTTTTCTTTTTTAAATGATCATTTATAGTCGATGATGTAGGGTTTGTTTTACCTATGTTGTTTCCATTCTTATCAGTGTTTCGATCGTTATAGGATATGTTGCAACGTTATATTACAAAAAAATATTGATCAGTGTTTTCTTTGGTGCTAATTTTAATGATATTCTTATGTATTTTTCATCCTCTCTGTTGTTAGCAATGGTTGTTAATGGAAATGAACATTCTGGAAGAACTTCTTCAAATAGTAATTACATCATTATTTGAAAATAAGATTCTAAAAAGAAAAAATCTTCTTCCTCACTAAATCTAATTAACAAAGAAACTAACCCTTCTTAGTGAACAAAACCAACATAATTGGATATGCAATAATTATAGTAAACCATATGATTGTATAACACATGATGGGAAGGAAGGATATTTTTGTAACTTTAGATGAATTTCTTCCTGACAACAAGAAGCTCAAAGTCAAATTAAAGGAAAATGAGATATATATTCTTATCAAGACAAAGAATGGAGCATAAAGAATTATTGATGGATGTACTCAAAAAAAAAAAAAAAGAATTATTGATGTGTATTATTATGTTCTAGGTCCCAAATACAATTTCTTAAGTGTTGGGCATCTTCTACTAAAAAGACGTGA

mRNA sequence

ATGGCTAGTCTCCACTCCTCTACCATCGTATACTCTCTCGTATTAAGTGCTTTTATGTTAATGAGCTTCGATTCTTTGATCATGGTTGTAAGCGCAAGACATCTTTTAGAGACGCCATTACCTAAGGTACCCGAAGAGCATCCAAATTCAGAAATACCCACTTTGCCAAAGCCTGAGCTTCCTCCATTACCGAAGGTTGAGTTGCCCCCATTGCCTCATTTTCCACCATTGGAAAAGCCGAAACTGCCTGAATTGCCAAAGCCTGAATTTCTTAAGTTGCCTAAATTACCGAATGTGCCTAACTTGAGATTCCCAAATTACCAGAATTGCCAAACGTGCCTAAACGAGTCCCAAATACAATTTCTTAAGTGTTGGGCATCTTCTACTAAAAAGACGTGA

Coding sequence (CDS)

ATGGCTAGTCTCCACTCCTCTACCATCGTATACTCTCTCGTATTAAGTGCTTTTATGTTAATGAGCTTCGATTCTTTGATCATGGTTGTAAGCGCAAGACATCTTTTAGAGACGCCATTACCTAAGGTACCCGAAGAGCATCCAAATTCAGAAATACCCACTTTGCCAAAGCCTGAGCTTCCTCCATTACCGAAGGTTGAGTTGCCCCCATTGCCTCATTTTCCACCATTGGAAAAGCCGAAACTGCCTGAATTGCCAAAGCCTGAATTTCTTAAGTTGCCTAAATTACCGAATGTGCCTAACTTGAGATTCCCAAATTACCAGAATTGCCAAACGTGCCTAAACGAGTCCCAAATACAATTTCTTAAGTGTTGGGCATCTTCTACTAAAAAGACGTGA

Protein sequence

MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPELPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNLRFPNYQNCQTCLNESQIQFLKCWASSTKKT

Homology

[Close]

BLAST of Lcy08g000550 vs. ExPASy Swiss-Prot
Match: Q9LXB7 (Protein PELPK2 OS=Arabidopsis thaliana OX=3702 GN=PELPK2 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 14  VLSAFMLMSFDSLIMV---VSARHLLETPLPKVPEEHPNSEIPTLPKPELPPL---PKVE 73
           +LS F+++   +L+ V   V AR LLE P P++P        P LPKPE+P L   PK+E
Sbjct: 11  LLSPFLIICLIALLSVPVSVGARRLLEEPKPEIP------TFPELPKPEMPKLPEFPKLE 70

Query: 74  LPPLPHFPPLEKPKLPELPKPE---FLKLPKLPNVPNLRFP 106
           LP LP  P  E PKLPE+ KPE   F +LPK+P  P   FP
Sbjct: 71  LPKLPEIPKPEMPKLPEIQKPELPTFPELPKMPEFPKFDFP 105

[Close]

BLAST of Lcy08g000550 vs. ExPASy Swiss-Prot
Match: Q9LXB8 (Protein PELPK1 OS=Arabidopsis thaliana OX=3702 GN=PELPK1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-08
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 3   SLHSSTIVYSLVLSAFMLMSFDSLI---MVVSARHLLETPLPKVPEEHPNSEIPTLPK-- 62
           +L   ++  +L+ S  +++   +L+     V AR LLE P P++P      ++P LPK  
Sbjct: 2   ALMKKSLSAALLSSPLLIICLIALLADPFSVGARRLLEDPKPEIP------KLPELPKFE 61

Query: 63  -PELPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLP--------KLPNVPNLRFPNY 108
            P+LP  PK ELP LP FP  E PK+PE+PKPE  K+P        KLP++P L  P +
Sbjct: 62  VPKLPEFPKPELPKLPEFPKPELPKIPEIPKPELPKVPEIPKPEETKLPDIPKLELPKF 114

[Close]

BLAST of Lcy08g000550 vs. ExPASy TrEMBL
Match: A0A5A7SML8 (Periaxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002000 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPEL 60
           MA+   ST+   L+L   M+MSFD LIM VSARHLLETPLP VPEE P  EIPTLPKPEL
Sbjct: 1   MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIPTLPKPEL 60

Query: 61  PPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPN 102
           PPLPKVELPPLPH PPLEKPK+PELPKPE  KLP+LP VPN
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPN 101

[Close]

BLAST of Lcy08g000550 vs. ExPASy TrEMBL
Match: A0A6J1CK42 (periaxin-like OS=Momordica charantia OX=3673 GN=LOC111012169 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 76/107 (71.03%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPEL 60
           MASL  ST V  L++SAF+ MS DSLIM ++ARHLLETP PK+PEE P  EIPTLP PEL
Sbjct: 1   MASLRFSTFVLPLLVSAFIWMSCDSLIMTINARHLLETPSPKIPEELPKPEIPTLPNPEL 60

Query: 61  PPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNLRFPNY 108
            PLPKVELPPLPH PPLEKPKLPEL KPE  KLP+LPNVP    P +
Sbjct: 61  LPLPKVELPPLPHLPPLEKPKLPELSKPELPKLPELPNVPKSELPKF 107

[Close]

BLAST of Lcy08g000550 vs. ExPASy TrEMBL
Match: A0A1S3C0Y7 (periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495382 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPEL 60
           MA+   ST+   L+L   M+MSFD LIM VSARHLLETPLP VPEE P  EIPTLPKPEL
Sbjct: 1   MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIPTLPKPEL 60

Query: 61  PPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPN 102
           PPLPKVELPPLPH PPLEKPK+PELPKPE  KLP+LP VPN
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPN 101

[Close]

BLAST of Lcy08g000550 vs. ExPASy TrEMBL
Match: A0A6J1CLX4 (uncharacterized protein LOC111012168 OS=Momordica charantia OX=3673 GN=LOC111012168 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 78/108 (72.22%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVP-EEHPNSEIPTLPKPE 60
           MASL  ST V  L++S F+ MS DSLIM VSARHLLETP PKV  EE P  EIPTLPKPE
Sbjct: 1   MASLCFSTFVLPLLVSTFIWMSCDSLIMTVSARHLLETPSPKVVLEELPKPEIPTLPKPE 60

Query: 61  LPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNLRFPNY 108
           LPPLPKVELPPLPH PP EKPKLPEL KPE  KLP+LPNVP    P +
Sbjct: 61  LPPLPKVELPPLPHLPPFEKPKLPELSKPELPKLPELPNVPKPELPKF 108

[Close]

BLAST of Lcy08g000550 vs. ExPASy TrEMBL
Match: A0A5A7SPG9 (Periaxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001980 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFM-LMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPE 60
           M++   ST    L+    M +MSFD  IM  SARHLLETPLPKVPEE P  EIPTL KPE
Sbjct: 1   MSTHRYSTFASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIPTLAKPE 60

Query: 61  LPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNL 103
           LPPLPK ELPPLPH PPLEKPKLPEL KPE  KLP+LP VPNL
Sbjct: 61  LPPLPKFELPPLPHLPPLEKPKLPELSKPELPKLPELPKVPNL 103

[Close]

BLAST of Lcy08g000550 vs. NCBI nr
Match: XP_022141914.1 (periaxin-like [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-28
Identity = 76/107 (71.03%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPEL 60
           MASL  ST V  L++SAF+ MS DSLIM ++ARHLLETP PK+PEE P  EIPTLP PEL
Sbjct: 1   MASLRFSTFVLPLLVSAFIWMSCDSLIMTINARHLLETPSPKIPEELPKPEIPTLPNPEL 60

Query: 61  PPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNLRFPNY 108
            PLPKVELPPLPH PPLEKPKLPEL KPE  KLP+LPNVP    P +
Sbjct: 61  LPLPKVELPPLPHLPPLEKPKLPELSKPELPKLPELPNVPKSELPKF 107

[Close]

BLAST of Lcy08g000550 vs. NCBI nr
Match: XP_008455139.1 (PREDICTED: periaxin-like [Cucumis melo] >KAA0031443.1 periaxin-like [Cucumis melo var. makuwa] >TYK06894.1 periaxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-28
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPEL 60
           MA+   ST+   L+L   M+MSFD LIM VSARHLLETPLP VPEE P  EIPTLPKPEL
Sbjct: 1   MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIPTLPKPEL 60

Query: 61  PPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPN 102
           PPLPKVELPPLPH PPLEKPK+PELPKPE  KLP+LP VPN
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPN 101

[Close]

BLAST of Lcy08g000550 vs. NCBI nr
Match: XP_022141913.1 (uncharacterized protein LOC111012168 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 78/108 (72.22%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVP-EEHPNSEIPTLPKPE 60
           MASL  ST V  L++S F+ MS DSLIM VSARHLLETP PKV  EE P  EIPTLPKPE
Sbjct: 1   MASLCFSTFVLPLLVSTFIWMSCDSLIMTVSARHLLETPSPKVVLEELPKPEIPTLPKPE 60

Query: 61  LPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNLRFPNY 108
           LPPLPKVELPPLPH PP EKPKLPEL KPE  KLP+LPNVP    P +
Sbjct: 61  LPPLPKVELPPLPHLPPFEKPKLPELSKPELPKLPELPNVPKPELPKF 108

[Close]

BLAST of Lcy08g000550 vs. NCBI nr
Match: XP_038888721.1 (protein PELPK1-like [Benincasa hispida])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-25
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFMLMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPEL 60
           MA L  ST V+S++L  F+L++FD L+M V+ARHLLETPLPKVPE+ P  +IPTL KPEL
Sbjct: 1   MAILRFSTFVFSVILGTFLLINFDYLVMTVNARHLLETPLPKVPEDLPKPKIPTLQKPEL 60

Query: 61  PPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNLRFPNY 108
           PPLPKVELPPLPH PP EKPK+PE PKPE  K  +LP V  L  P +
Sbjct: 61  PPLPKVELPPLPHLPPFEKPKVPEFPKPELPKSLELPEVSKLDLPKF 107

[Close]

BLAST of Lcy08g000550 vs. NCBI nr
Match: XP_008455138.1 (PREDICTED: periaxin-like [Cucumis melo] >KAA0031441.1 periaxin-like [Cucumis melo var. makuwa] >TYK06892.1 periaxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.6e-24
Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASLHSSTIVYSLVLSAFM-LMSFDSLIMVVSARHLLETPLPKVPEEHPNSEIPTLPKPE 60
           M++   ST    L+    M +MSFD  IM  SARHLLETPLPKVPEE P  EIPTL KPE
Sbjct: 1   MSTHRYSTFASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIPTLAKPE 60

Query: 61  LPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLPKLPNVPNL 103
           LPPLPK ELPPLPH PPLEKPKLPEL KPE  KLP+LP VPNL
Sbjct: 61  LPPLPKFELPPLPHLPPLEKPKLPELSKPELPKLPELPKVPNL 103

[Close]

BLAST of Lcy08g000550 vs. TAIR 10
Match: AT5G09520.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-10
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 14  VLSAFMLMSFDSLIMV---VSARHLLETPLPKVPEEHPNSEIPTLPKPELPPL---PKVE 73
           +LS F+++   +L+ V   V AR LLE P P++P        P LPKPE+P L   PK+E
Sbjct: 11  LLSPFLIICLIALLSVPVSVGARRLLEEPKPEIP------TFPELPKPEMPKLPEFPKLE 70

Query: 74  LPPLPHFPPLEKPKLPELPKPE---FLKLPKLPNVPNLRFP 106
           LP LP  P  E PKLPE+ KPE   F +LPK+P  P   FP
Sbjct: 71  LPKLPEIPKPEMPKLPEIQKPELPTFPELPKMPEFPKFDFP 105

[Close]

BLAST of Lcy08g000550 vs. TAIR 10
Match: AT5G09530.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-09
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 3   SLHSSTIVYSLVLSAFMLMSFDSLI---MVVSARHLLETPLPKVPEEHPNSEIPTLPK-- 62
           +L   ++  +L+ S  +++   +L+     V AR LLE P P++P      ++P LPK  
Sbjct: 2   ALMKKSLSAALLSSPLLIICLIALLADPFSVGARRLLEDPKPEIP------KLPELPKFE 61

Query: 63  -PELPPLPKVELPPLPHFPPLEKPKLPELPKPEFLKLP--------KLPNVPNLRFPNY 108
            P+LP  PK ELP LP FP  E PK+PE+PKPE  K+P        KLP++P L  P +
Sbjct: 62  VPKLPEFPKPELPKLPEFPKPELPKIPEIPKPELPKVPEIPKPEETKLPDIPKLELPKF 114

The following BLAST results are available for this feature:

BLAST of Lcy08g000550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXB7	7.6e-09	46.53	Protein PELPK2 OS=Arabidopsis thaliana OX=3702 GN=PELPK2 PE=3 SV=1	[more]
Q9LXB8	8.4e-08	38.66	Protein PELPK1 OS=Arabidopsis thaliana OX=3702 GN=PELPK1 PE=2 SV=1	[more]

BLAST of Lcy08g000550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SML8	2.6e-28	75.25	Periaxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002000 ...	[more]
A0A6J1CK42	2.6e-28	71.03	periaxin-like OS=Momordica charantia OX=3673 GN=LOC111012169 PE=4 SV=1	[more]
A0A1S3C0Y7	2.6e-28	75.25	periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495382 PE=4 SV=1	[more]
A0A6J1CLX4	8.4e-27	72.22	uncharacterized protein LOC111012168 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5A7SPG9	1.8e-24	69.90	Periaxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001980 ...	[more]

BLAST of Lcy08g000550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141914.1	5.4e-28	71.03	periaxin-like [Momordica charantia]	[more]
XP_008455139.1	5.4e-28	75.25	PREDICTED: periaxin-like [Cucumis melo] >KAA0031443.1 periaxin-like [Cucumis mel...	[more]
XP_022141913.1	1.7e-26	72.22	uncharacterized protein LOC111012168 [Momordica charantia]	[more]
XP_038888721.1	2.5e-25	64.49	protein PELPK1-like [Benincasa hispida]	[more]
XP_008455138.1	3.6e-24	69.90	PREDICTED: periaxin-like [Cucumis melo] >KAA0031441.1 periaxin-like [Cucumis mel...	[more]

BLAST of Lcy08g000550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09520.1	5.4e-10	46.53	hydroxyproline-rich glycoprotein family protein	[more]
AT5G09530.1	6.0e-09	38.66	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..61
None	No IPR available	PANTHER	PTHR33088:SF28	PROTEIN PELPK1-RELATED	coord: 1..107
IPR044659	Protein PELPK-like	PANTHER	PTHR33088	MUCIN-2	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g000550.1	Lcy08g000550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane