Lcy07g019440 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g019440
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr07: 47892403 .. 47892948 (+)
RNA-Seq ExpressionLcy07g019440
SyntenyLcy07g019440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGAAGGTCGGATAGGGCCTGTTTTCGTTTTGAGGAGGTTTGGACTCAGTTTGATGATTGCAGGGAGGTTGGAGAGAGGGGGTGGGTTGTGGCACATACATCTTCAAATGGTGATCAAGAGGATAGGGGGGAGAGATGGAGAATGAGGGTGAGGAAGGGTGCAACAGAATCATCCAGCTGGGGAAGATCTAGGAAAGGTAATTATAGGAGTCGGATATCTCTAGCCCATCGACAACTTCATAATGTGCTATCTGTGTAGGGGGATGTTCAGTCGGCTAGAACCAGTTTGGAGAACTTGTTGGGGGAGGAAGAGATTTATTGGCGCCAACGATCCCAGGTGGATTGGATGCAGTGGGGTGATAGGAATTCAAAGTGGTTCCATCAACGAGCGGCCCAGAGGAGGAGGCAAAATCATATGGAGGGGTTGGTTGATAAGGGTGGGAGGTGGGTGTCGGATGAGGAGGAGATGGGTCAGGTTGTGGCTGAATATTTCCATGAACTCTTTTCCTCTAATAATCTGCAGAATAGTGGTAGTCTGTAG

mRNA sequence

ATGTCCAGAAGGTCGGATAGGGCCTGTTTTCGTTTTGAGGAGGTTTGGACTCAGTTTGATGATTGCAGGGAGGGGGATGTTCAGTCGGCTAGAACCAGTTTGGAGAACTTGTTGGGGGAGGAAGAGATTTATTGGCGCCAACGATCCCAGGTGGATTGGATGCAGTGGGGTGATAGGAATTCAAAGTGGTTCCATCAACGAGCGGCCCAGAGGAGGAGGCAAAATCATATGGAGGGGTTGGTTGATAAGGGTGGGAGGTGGGTGTCGGATGAGGAGGAGATGGGTCAGGTTGTGGCTGAATATTTCCATGAACTCTTTTCCTCTAATAATCTGCAGAATAGTGGTAGTCTGTAG

Coding sequence (CDS)

ATGTCCAGAAGGTCGGATAGGGCCTGTTTTCGTTTTGAGGAGGTTTGGACTCAGTTTGATGATTGCAGGGAGGGGGATGTTCAGTCGGCTAGAACCAGTTTGGAGAACTTGTTGGGGGAGGAAGAGATTTATTGGCGCCAACGATCCCAGGTGGATTGGATGCAGTGGGGTGATAGGAATTCAAAGTGGTTCCATCAACGAGCGGCCCAGAGGAGGAGGCAAAATCATATGGAGGGGTTGGTTGATAAGGGTGGGAGGTGGGTGTCGGATGAGGAGGAGATGGGTCAGGTTGTGGCTGAATATTTCCATGAACTCTTTTCCTCTAATAATCTGCAGAATAGTGGTAGTCTGTAG

Protein sequence

MSRRSDRACFRFEEVWTQFDDCREGDVQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGRWVSDEEEMGQVVAEYFHELFSSNNLQNSGSL
Homology
BLAST of Lcy07g019440 vs. ExPASy TrEMBL
Match: M5XQU7 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020120mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 7   RACFRFEEVWTQFDDCREGDVQSARTS------------------LENLLGEEEIYWRQR 66
           R+ FRFE +WTQ +DC      +  TS                  L++LL  EE +W+QR
Sbjct: 211 RSFFRFESMWTQHEDCESIIANAWNTSFTGTLMYQVSTYHLLMSQLDSLLSREEAFWKQR 270

Query: 67  SQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGRWVSDEEEMGQVVAEYFHELFSS 116
           S+V W++ GDRN+++FHQRA+ R+++N+++GL D  GRW  DE+ +  VV +YF  LF+S
Sbjct: 271 SKVSWLKEGDRNTRFFHQRASNRKQRNYVKGLRDNTGRWREDEQGLQYVVLDYFTHLFTS 330

BLAST of Lcy07g019440 vs. ExPASy TrEMBL
Match: A0A2N9GC56 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24870 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.1e-17
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 24  EGDVQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDK 83
           E  +   +  L  LLG+EEI WRQRS+V W++ GDRN+K+FH RA QR+R+N MEGL D 
Sbjct: 598 EEQICCLKKELNALLGKEEIMWRQRSRVQWLREGDRNTKFFHVRANQRKRRNGMEGLFDH 657

Query: 84  GGRWVSDEEEMGQVVAEYFHELFSSNN 111
            G+WV+ ++++ QV  +YFH +FS+++
Sbjct: 658 NGQWVTGQKDIAQVTVQYFHSIFSTSH 684

BLAST of Lcy07g019440 vs. ExPASy TrEMBL
Match: A0A2N9F775 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14658 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 37/83 (44.58%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 27  VQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGR 86
           +++ +  +  LL ++EI+WRQRS+  W++ GDRN+K+FHQ+A QRR +N + G++D  GR
Sbjct: 698 IRAVQNEINMLLHQDEIHWRQRSREIWLEAGDRNTKYFHQKAKQRRGKNTIRGILDSNGR 757

Query: 87  WVSDEEEMGQVVAEYFHELFSSN 110
           W  DE+ MG++  +YF+++FSS+
Sbjct: 758 WCEDEDGMGEIAVQYFNDIFSSS 780

BLAST of Lcy07g019440 vs. ExPASy TrEMBL
Match: A0A2N9I611 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47331 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 39/102 (38.24%), Postives = 68/102 (66.67%), Query Frame = 0

Query: 13  EEVWTQFDDCREG----DVQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRA 72
           EE   Q +   +G     ++  +  +  LL +EE+YW+QR+++ W++ GDRN+K+FH +A
Sbjct: 547 EETLKQLESNNQGQHSAQIKILKMEVNELLEKEEVYWKQRARIAWLKEGDRNTKFFHSKA 606

Query: 73  AQRRRQNHMEGLVDKGGRWVSDEEEMGQVVAEYFHELFSSNN 111
            QR+++N ++GL+DK GRW  D  +M ++  EYF ++F+S N
Sbjct: 607 TQRQKKNMVKGLIDKEGRWHQDPNKMEEIAVEYFEDIFTSTN 648

BLAST of Lcy07g019440 vs. ExPASy TrEMBL
Match: A0A2N9F9E4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11522 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-15
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 21  DCREGDVQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGL 80
           D R  ++   R  L  LL +EE  WRQRS+V W+  GDRN+K+FH +A+QRRR+NH+  L
Sbjct: 709 DRRHDNINDLRRELNILLEKEERMWRQRSRVSWLTQGDRNTKYFHGKASQRRRRNHISRL 768

Query: 81  VDKGGRWVSDEEEMGQVVAEYFHELFSSNN 111
            D+ GRW    EE+  ++ EY++ LFS++N
Sbjct: 769 SDERGRWYDSNEEIAALMIEYYNTLFSTSN 798

BLAST of Lcy07g019440 vs. NCBI nr
Match: XP_024177965.2 (uncharacterized protein LOC112183883 [Rosa chinensis])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 0

Query: 1   MSRRSDRACFRFEEVWTQFDDCR-------EGDVQSAR----------TSLENLLGEEEI 60
           M RR  R  FRFE  WT  + CR       E +V   R            LE LL EE++
Sbjct: 237 MGRRRHR--FRFESFWTLHEGCRNVVKAGWEPEVNGLRMQQEECSALTAKLEGLLAEEDV 296

Query: 61  YWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGRWVSDEEEMGQVVAEYFH 114
           YW+QRS+V W+  GDRN+K+FH++A+ RR +N + GL D  G W    + M  VV  YF 
Sbjct: 297 YWKQRSKVTWLADGDRNTKFFHRKASNRRAKNRLTGLFDYNGVWHDTSQGMEDVVLHYFS 356

BLAST of Lcy07g019440 vs. NCBI nr
Match: XP_023911628.1 (uncharacterized protein LOC112023240 [Quercus suber])

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-15
Identity = 39/86 (45.35%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 24  EGDVQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDK 83
           + D  S    ++ LL ++EIYW QRS+++W+Q GDRN+K+FH +A+QRRR+N++ G+ + 
Sbjct: 758 KADFLSLSKKMDELLQKQEIYWAQRSRINWLQHGDRNTKFFHAKASQRRRKNYISGIRNS 817

Query: 84  GGRWVSDEEEMGQVVAEYFHELFSSN 110
            G+WV + EE+GQV ++YF +LF ++
Sbjct: 818 QGQWVENLEEVGQVASDYFDDLFQAS 843

BLAST of Lcy07g019440 vs. NCBI nr
Match: XP_030938668.1 (uncharacterized protein LOC115963692 [Quercus lobata])

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 38/91 (41.76%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 27  VQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGR 86
           ++S +  + N++ ++E++WRQRS+  W+  GD+N+K+FH RA+QRRR+NH+ G+ D   R
Sbjct: 609 IKSLKAEITNIIHQDELFWRQRSRSIWLPAGDKNTKYFHNRASQRRRKNHISGVFDSDER 668

Query: 87  WVSDEEEMGQVVAEYFHELFSSNNLQNSGSL 118
           W + +E++ +V   YF ELFS+ + QN  S+
Sbjct: 669 WCTSDEQIAKVAESYFQELFSTAHPQNMESV 699

BLAST of Lcy07g019440 vs. NCBI nr
Match: XP_030939698.1 (uncharacterized protein LOC115964550 [Quercus lobata])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 38/91 (41.76%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 27  VQSARTSLENLLGEEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGR 86
           ++S +  + N++ ++E++WRQRS+  W+  GD+N+K+FH RA+QRRR+NH+ G+ D   R
Sbjct: 704 IKSLKAEITNIIHQDELFWRQRSRSIWLPAGDKNTKYFHNRASQRRRKNHISGVFDSDER 763

Query: 87  WVSDEEEMGQVVAEYFHELFSSNNLQNSGSL 118
           W + +E++ +V   YF ELFS+ + QN  S+
Sbjct: 764 WCTSDEQIAKVAEFYFQELFSTAHPQNMESV 794

BLAST of Lcy07g019440 vs. NCBI nr
Match: XP_030926688.1 (uncharacterized protein LOC115953246 [Quercus lobata])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 3   RRSDRACFRFEEVWTQFDDCREGDVQSA-----------------------RTSLENLLG 62
           +R  R  FRFE +W    +C   ++++                        +T L  LL 
Sbjct: 155 KRWSRKPFRFESIWLTDLECGHTEIKNTKELLWKAEEDVLNGGNPQEVVQLKTELNLLLD 214

Query: 63  EEEIYWRQRSQVDWMQWGDRNSKWFHQRAAQRRRQNHMEGLVDKGGRWVSDEEEMGQVVA 114
            EE  WRQR+ V W+Q GDRN+K+FH  A QR+R+N ++GL D+ G W  DEE + +V+ 
Sbjct: 215 REEQMWRQRAHVKWIQSGDRNTKFFHGSATQRKRRNFIKGLKDESGVWQGDEEVVSRVLT 274

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M5XQU71.1e-1739.37Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020120mg PE=4 SV=1[more]
A0A2N9GC569.1e-1749.43Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9F7751.3e-1544.58Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9I6113.8e-1538.24Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47331 PE=4 SV=1[more]
A0A2N9F9E46.5e-1546.67Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
XP_024177965.21.6e-1540.00uncharacterized protein LOC112183883 [Rosa chinensis][more]
XP_023911628.12.7e-1545.35uncharacterized protein LOC112023240 [Quercus suber][more]
XP_030938668.14.6e-1541.76uncharacterized protein LOC115963692 [Quercus lobata][more]
XP_030939698.11.0e-1441.76uncharacterized protein LOC115964550 [Quercus lobata][more]
XP_030926688.11.3e-1436.57uncharacterized protein LOC115953246 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 31..109
NoneNo IPR availablePANTHERPTHR33710:SF24SUBFAMILY NOT NAMEDcoord: 31..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g019440.1Lcy07g019440.1mRNA