Lcy07g018150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g018150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ORF43m
Location	Chr07: 46776939 .. 46777112 (+)
RNA-Seq Expression	Lcy07g018150
Synteny	Lcy07g018150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGAGTCAGCGACTCTCTTAGGGTTCCCTCATCTGAGATCCTTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCTTTCAACCCTTTGAGCAAAATGCGGCAAAAGGAAGGAAAATCCATATGGACAATACCCATTGTCTCCACCCCATAG

mRNA sequence

ATGGACGGAGTCAGCGACTCTCTTAGGGTTCCCTCATCTGAGATCCTTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCTTTCAACCCTTTGAGCAAAATGCGGCAAAAGGAAGGAAAATCCATATGGACAATACCCATTGTCTCCACCCCATAG

Coding sequence (CDS)

ATGGACGGAGTCAGCGACTCTCTTAGGGTTCCCTCATCTGAGATCCTTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCTTTCAACCCTTTGAGCAAAATGCGGCAAAAGGAAGGAAAATCCATATGGACAATACCCATTGTCTCCACCCCATAG

Protein sequence

MDGVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSIWTIPIVSTP

Homology

[Close]

BLAST of Lcy07g018150 vs. ExPASy TrEMBL
Match: A0A2G2UXE5 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34938 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 3   GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGK-SIWTIPIVSTP 58
           GV  S RVPSSEI GEEDQVGPCEQLDALSPFNPLS+MRQK+ K + WT PI+STP
Sbjct: 159 GVGGSPRVPSSEISGEEDQVGPCEQLDALSPFNPLSEMRQKKRKENPWTDPIISTP 214

[Close]

BLAST of Lcy07g018150 vs. ExPASy TrEMBL
Match: A0A5K1B0R4 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13303 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3  GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSIWTIPIVSTP 58
          GV  S RV SS I GEEDQVGPCEQLDALSPFNPLS+MRQKEG   WT PIVSTP
Sbjct: 9  GVGGSPRVTSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGNP-WTDPIVSTP 62

[Close]

BLAST of Lcy07g018150 vs. ExPASy TrEMBL
Match: A0A200PP77 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8595g6 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSI 49
          GV  SLRVPSS I GEEDQVGPCEQLDALSPFNPLS+MRQKEGKS+
Sbjct: 9  GVGGSLRVPSSRIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSM 54

[Close]

BLAST of Lcy07g018150 vs. ExPASy TrEMBL
Match: A0A6B9QFK3 (ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSI 49
          GV  SLRVPSS I GEEDQVGPCEQLDALSPFNPLS+MRQKEGKS+
Sbjct: 9  GVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSM 54

[Close]

BLAST of Lcy07g018150 vs. ExPASy TrEMBL
Match: A0A6B9QF48 (ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSI 49
          GV  SLRVPSS I GEEDQVGPCEQLDALSPFNPLS+MRQKEGKS+
Sbjct: 9  GVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSM 54

[Close]

BLAST of Lcy07g018150 vs. NCBI nr
Match: PHT25431.1 (hypothetical protein CQW23_34938 [Capsicum baccatum])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 3   GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGK-SIWTIPIVSTP 58
           GV  S RVPSSEI GEEDQVGPCEQLDALSPFNPLS+MRQK+ K + WT PI+STP
Sbjct: 159 GVGGSPRVPSSEISGEEDQVGPCEQLDALSPFNPLSEMRQKKRKENPWTDPIISTP 214

[Close]

BLAST of Lcy07g018150 vs. NCBI nr
Match: KAF3670896.1 (hypothetical protein FXO38_06869 [Capsicum annuum])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 3  GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGK-SIWTIPIVSTP 58
          GV  S RVPSSEI GEEDQVGPCEQLDALSPFNPLS+MRQK+ K + WT PI+STP
Sbjct: 37 GVGGSPRVPSSEISGEEDQVGPCEQLDALSPFNPLSEMRQKKRKENPWTDPIISTP 92

[Close]

BLAST of Lcy07g018150 vs. NCBI nr
Match: VVW90859.1 (unnamed protein product [Nymphaea colorata])

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3  GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSIWTIPIVSTP 58
          GV  S RV SS I GEEDQVGPCEQLDALSPFNPLS+MRQKEG   WT PIVSTP
Sbjct: 9  GVGGSPRVTSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGNP-WTDPIVSTP 62

[Close]

BLAST of Lcy07g018150 vs. NCBI nr
Match: KAG9438669.1 (hypothetical protein H6P81_021389 [Aristolochia fimbriata])

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3   GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSIWTIPIVSTP 58
           GV  S RVPSS I GEEDQVGPCEQLDALSPFNPLS+M QK  ++ WT PIVSTP
Sbjct: 104 GVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMWQKRKENPWTDPIVSTP 158

[Close]

BLAST of Lcy07g018150 vs. NCBI nr
Match: KAG9438444.1 (hypothetical protein H6P81_021614 [Aristolochia fimbriata])

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3   GVSDSLRVPSSEILGEEDQVGPCEQLDALSPFNPLSKMRQKEGKSIWTIPIVSTP 58
           GV  S RVPSS I GEEDQVGPCEQLDALSPFNPLS+M QK  ++ WT PIVSTP
Sbjct: 156 GVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMWQKRKENPWTDPIVSTP 210

The following BLAST results are available for this feature:

BLAST of Lcy07g018150 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g018150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2UXE5	1.6e-14	78.57	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34938 PE=4 SV=1	[more]
A0A5K1B0R4	1.0e-13	80.00	Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13303 PE=4 SV...	[more]
A0A200PP77	3.0e-13	86.96	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8595g6 PE=4 SV=1	[more]
A0A6B9QFK3	5.1e-13	86.96	ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1	[more]
A0A6B9QF48	5.1e-13	86.96	ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1	[more]

BLAST of Lcy07g018150 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT25431.1	3.3e-14	78.57	hypothetical protein CQW23_34938 [Capsicum baccatum]	[more]
KAF3670896.1	3.3e-14	78.57	hypothetical protein FXO38_06869 [Capsicum annuum]	[more]
VVW90859.1	2.1e-13	80.00	unnamed protein product [Nymphaea colorata]	[more]
KAG9438669.1	2.8e-13	76.36	hypothetical protein H6P81_021389 [Aristolochia fimbriata]	[more]
KAG9438444.1	2.8e-13	76.36	hypothetical protein H6P81_021614 [Aristolochia fimbriata]	[more]

BLAST of Lcy07g018150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g018150.1	Lcy07g018150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006101	citrate metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004108	citrate (Si)-synthase activity