Lcy07g017690 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g017690
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTranscription factor E2F isoform 1
LocationChr07: 46312702 .. 46314554 (-)
RNA-Seq ExpressionLcy07g017690
SyntenyLcy07g017690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGACATAAGGGCGGAGTTGTCTTTTCCCTTTCTCCGTTTGTCTTCATATTCGAACAGAGAAAAACGCACCGTAAAAAAATTGCCACCGTGCAACGTCCATTCACGCCACTTCTCGTAGCGCCAATCGAGCTACAGGTTACGGCTAAGGTGAGTACTGAGTCATCTTCCTCCTCGGCGTAGTCTTTGGTTTTGTTGTTTTTTGGGTGTGTCCAAGTCCTCAGATTCTTCTCTCTTTTCTTGTTGTCGAAAAAATTCAAATGGCGAAGACAAGAATCTATACGCCCACTCACAAGTAACCACTGTTTGTGTTCTCTGGGAGAAAATTCAATTATTCACTATCATTTTCTTTGTGGGTTCTGTTTTCTTGCTATTTCCAGAGAGAATCCAGCGCTCTCAAGGAGAATTTCACTCCATTCAACTGTTTTCTCATGTTTCGTTTCTTCTACTTGGAAATCGAGTCGTTGGTTCATTTGATTGCCTTTGAAGGGAATCTTACATACATGGATTGAAATTTTTGTGCTAATTTTAGTTTACACGTGTAGTGATGAGAATGTATGGCATTGGGCTAGGGTTTTAGGAAGTTCGATTGGTTGCAACATTGGGAAATCTGATTATTGTTGGTTGGATTTGAGAGACATTGTCATTTTGTTCGTTCTGCTTTGCGTCTGTCTGTGGTCAGGTGTATGCCAGTATGAATTATGAAGATAATTGCATATTTGAAACTAGGGTTTGCCAGAGGCTTTTTGGTTACTCGTACACTCTTTTCTGTGAATGAATTTATACCCTGAATCTGCCTTGATTGTGGTTCATATCTGTGAAATTATGCACGGGAACGCAGCTGACCTGAACTGAGACCTTCATTTGGTCATGTACGTGTTTATTTGATAATTGTTGAAATGTATTGCAGGCACAGTCCTTTTTCTTTATAATAATTTGCTGTTTTCTATCTGGACATCTCTTGAATTGAGTTGTACTCGTCTCTGCACCGTTCATGAGTTTGCTTCGTTTCTTTACTCCAATATTTACTATTGCCTTTGTATATTAGCTGATTGGTAGAAACTTTATTTCAACTTTTAGTACAAATGTGTGAACATTCAATGTCTTGCAGATGCGGTTGGTTTTGCTATGTAATATTTTGCTCTTACCAAAAACATGAACAACTTCTGCTGTCAAGTGTTAGGCCCTGAGCTGCTGTGAATCATTCTTTTTCTTTATACACACAAATGCAGGCCTTTCATGCTATTTTGTCATGTTATTAGTTGCTATTATTATGACTGACAAGAAACTTTCGTTCTGTGTCTTGTTTTAAACGTCCCTCTGTGCCAGTGTGTTGATATGTATATGGAACTTCACTCTTTTGCTTGTTCAGATGCTTACTTCATTTTTAAAGTTCTTTTGATCTAAGCATCATTGGAATGCTCAGCTTATCAAATTATTGGGAACCTTTATCATATGAACATGTAAAAGAACCATTTTTGAGAATTTAATGTGTTTGCTCTTGGTTAATCTTTTGGTTCTTGGTTATCTCCTAGTTGTGCTTTGGTTTGTAGATTGTTTGTAACTTGACATGGTTTTTTGTTTTCAGCTTCTTTGGGCAGCCTTACATGGGAAACAAACCCGTGAAGCAACCACAGGAACAAAGGGAAGAAATCTTCTTGAAGATAGTGCCTCCTCTGGACCAAGCTTATGTTAGGTGGCTCGCTCGGGATCTTGAGAGGATTCATGGCTTCACTCCAAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGATGTGAGTTTAGACGATCCAGATCTGGCACATTTACTGAAGTAG

mRNA sequence

ATGAAAGGACATAAGGGCGGAGTTGTCTTTTCCCTTTCTCCGTTTGTCTTCATATTCGAACAGAGAAAAACGCACCGTAAAAAAATTGCCACCGTGCAACGTCCATTCACGCCACTTCTCGTAGCGCCAATCGAGCTACAGGTTACGGCTAAGGGAATCTTACATACATGGATTGAAATTTTTGTGCTAATTTTAGTTTACACGTGTAGTGATGAGAATGTATGGCATTGGGCTAGGGTTTTAGGAAGTTCGATTGGTTGCAACATTGGGAAATCTGATTATTGTTGGTTGGATTTGAGAGACATTGTCATTTTGTTCGTTCTGCTTTGCGTCTGTCTGTGGTCAGGTGTATGCCACTTCTTTGGGCAGCCTTACATGGGAAACAAACCCGTGAAGCAACCACAGGAACAAAGGGAAGAAATCTTCTTGAAGATAGTGCCTCCTCTGGACCAAGCTTATGTTAGGTGGCTCGCTCGGGATCTTGAGAGGATTCATGGCTTCACTCCAAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGATGTGAGTTTAGACGATCCAGATCTGGCACATTTACTGAAGTAG

Coding sequence (CDS)

ATGAAAGGACATAAGGGCGGAGTTGTCTTTTCCCTTTCTCCGTTTGTCTTCATATTCGAACAGAGAAAAACGCACCGTAAAAAAATTGCCACCGTGCAACGTCCATTCACGCCACTTCTCGTAGCGCCAATCGAGCTACAGGTTACGGCTAAGGGAATCTTACATACATGGATTGAAATTTTTGTGCTAATTTTAGTTTACACGTGTAGTGATGAGAATGTATGGCATTGGGCTAGGGTTTTAGGAAGTTCGATTGGTTGCAACATTGGGAAATCTGATTATTGTTGGTTGGATTTGAGAGACATTGTCATTTTGTTCGTTCTGCTTTGCGTCTGTCTGTGGTCAGGTGTATGCCACTTCTTTGGGCAGCCTTACATGGGAAACAAACCCGTGAAGCAACCACAGGAACAAAGGGAAGAAATCTTCTTGAAGATAGTGCCTCCTCTGGACCAAGCTTATGTTAGGTGGCTCGCTCGGGATCTTGAGAGGATTCATGGCTTCACTCCAAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGATGTGAGTTTAGACGATCCAGATCTGGCACATTTACTGAAGTAG

Protein sequence

MKGHKGGVVFSLSPFVFIFEQRKTHRKKIATVQRPFTPLLVAPIELQVTAKGILHTWIEIFVLILVYTCSDENVWHWARVLGSSIGCNIGKSDYCWLDLRDIVILFVLLCVCLWSGVCHFFGQPYMGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLAHLLK
Homology
[Close]
BLAST of Lcy07g017690 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.6e-38
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGNKPVKQ + QREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDVSLDDPDLAHL K
Sbjct: 61  RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Lcy07g017690 vs. ExPASy TrEMBL
Match: A0A061GNT1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-36
Identity = 74/85 (87.06%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 119 HFFGQPYMGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPP 178
           H+ G   MGNKPVK  QEQREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPP
Sbjct: 60  HWLGSLIMGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPP 119

Query: 179 DHYIEFMRLNGWLDVSLDDPDLAHL 204
           DHYIE+MRLNGWLDV LDDPDLAHL
Sbjct: 120 DHYIEYMRLNGWLDVKLDDPDLAHL 142

[Close]
BLAST of Lcy07g017690 vs. ExPASy TrEMBL
Match: A0A061GZN3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGNKPVK  QEQREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1   MGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDV LDDPDLAHL K
Sbjct: 61  RLNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Lcy07g017690 vs. ExPASy TrEMBL
Match: A0A6J0ZWT3 (uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC110412594 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGNKPVK  QEQREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1   MGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDV LDDPDLAHL K
Sbjct: 61  RLNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Lcy07g017690 vs. ExPASy TrEMBL
Match: A0A5A7V7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001040 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGN+PVKQPQ   EE+FLKIVPPLDQ YVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNRPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDVSLDDPDLA LLK
Sbjct: 61  RLNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of Lcy07g017690 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-37
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGNKPVKQ + QREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDVSLDDPDLAHL K
Sbjct: 61  RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Lcy07g017690 vs. NCBI nr
Match: XP_038901668.1 (uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901671.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901672.1 uncharacterized protein LOC120088440 [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-37
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGN+ VKQPQEQR EIFLKIVPPLDQAY+RWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNRAVKQPQEQRGEIFLKIVPPLDQAYLRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDVSLDDPDLAHL K
Sbjct: 61  RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Lcy07g017690 vs. NCBI nr
Match: EOY31525.1 (Uncharacterized protein TCM_038446 [Theobroma cacao])

HSP 1 Score: 162.2 bits (409), Expect = 4.9e-36
Identity = 74/85 (87.06%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 119 HFFGQPYMGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPP 178
           H+ G   MGNKPVK  QEQREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPP
Sbjct: 60  HWLGSLIMGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPP 119

Query: 179 DHYIEFMRLNGWLDVSLDDPDLAHL 204
           DHYIE+MRLNGWLDV LDDPDLAHL
Sbjct: 120 DHYIEYMRLNGWLDVKLDDPDLAHL 142

[Close]
BLAST of Lcy07g017690 vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao])

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGNKPVK  QEQREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1   MGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDV LDDPDLAHL K
Sbjct: 61  RLNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Lcy07g017690 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 5.4e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 185
           MGN+PVKQPQ   EE+FLKIVPPLDQ YVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNRPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 186 RLNGWLDVSLDDPDLAHLLK 206
           RLNGWLDVSLDDPDLA LLK
Sbjct: 61  RLNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of Lcy07g017690 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEF 185
           MGNK     +E+REEI LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEF
Sbjct: 1   MGNK-ATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEF 60

Query: 186 MRLNGWLDVSLDDPDLAHLLK 206
           MRLNG LDV LDDPDLAHL K
Sbjct: 61  MRLNGSLDVDLDDPDLAHLFK 80

[Close]
BLAST of Lcy07g017690 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 126 MGNKPVKQPQEQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEF 185
           MGNK     +E+REEI LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEF
Sbjct: 1   MGNK-ATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEF 60

Query: 186 MRLNGWLDVSLDDPDLAHLLK 206
           MRLNG LDV LDDPDLAHL K
Sbjct: 61  MRLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:
BLAST of Lcy07g017690 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g017690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DJ995.6e-3895.00uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A061GNT12.4e-3687.06Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1[more]
A0A061GZN31.5e-3591.25Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ... [more]
A0A6J0ZWT31.5e-3591.25uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A5A7V7T42.6e-3591.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Lcy07g017690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152955.11.2e-3795.00uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha... [more]
XP_038901668.12.6e-3793.75uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 unchara... [more]
EOY31525.14.9e-3687.06Uncharacterized protein TCM_038446 [Theobroma cacao][more]
XP_021278844.13.2e-3591.25uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacte... [more]
KAA0061729.15.4e-3591.25uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa][more]
BLAST of Lcy07g017690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22210.11.2e-2770.37unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G22210.21.2e-2770.37unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g017690.1Lcy07g017690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0010020 chloroplast fission
cellular_component GO:0032153 cell division site
cellular_component GO:0009507 chloroplast
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding