Lcy07g016440 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g016440
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zinc finger CCCH domain-containing protein 24
Location	Chr07: 45144963 .. 45146840 (+)
RNA-Seq Expression	Lcy07g016440
Synteny	Lcy07g016440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAACTACTTGAATGAACAGGTGAGTAAATTCTCTGAAGATTTTAGTTTAGTTTTTAAGTTTCTTCTTTCTTATACCTTGTTTGATCGTGGAGAAAGCGTGGACGTATTGGTTTACAGTGATGATGAGTCGAAAAACTGTCTTCGTGGTTTTTCATTGTACATTTCCTCTTAACTATAGGGCAGGCTTCTGCCCCTTCTCATGAGCTTCATCGTCTCTGCTTCATTAAAATTATTCTAAAGATTGATCATGGTTTTGTCTTGAAAATGTTCTAACTTTTGGATGGCGTTACCCCCCTTTCCCTTCTGTGAAGTAATTTGCACGCTCGTCGTATACTATTGTGAAAGCCTCTCCTCTCCTCTCCTCTTGTTCTCATTCAATTGTTGATTATTTTGGGGCATTTTAAGCAGAGCTAATTTCTTCAATCCTGTATTCGTGTAGAACCTTATATAGCTATGAACCAAGTTAAATTAAAGATATGTTGGACCTGAATATTGTATGAAAATTGATGGTTCATTTCAAGAGTTATCTGTGCTGTAGTTCTCTAGCTCACTTTCCATTGTTGTGGTTTATGGAAGGCCTCTCATAAATTGTTTATCTCGTTGTCCCCTGGCACTGAATTGATGTTTAACCTTGTGGTATCGGTATGTCTTCTTTTTTGCAGAGTATTCTTTTTAAATCCGCAAAGAAGAAGAAAGGCATGACTGTAGGTTTTGTTACTTTTGAAAGTACAGAACAGTTGAAAAGTGCTGTTGAGGTATCTCTTGTTCCAAACTTAAGCTTCTTTGATTTATAAAATTAAATTGAATTTTTGATGATTCTTCAAATTTTGGATGCAATAGGAGTTAGAAGGAAAAACCATTGGCAAAAAGAATTTGAAGGTTGCAGACATGATTCCCAGATCATTTGATAAGACAATTAAATCATCAATGGATCGAGATAATACCTATGAACCTTCAGTGGCAGTCTCTTTATCATCAAATGATGGTGAAGATGCTGCTAACATAAATGATGGGAATTCTATTCCTAATGATTTAGTTTCGAAGGGAAAAAGTGCACGTGAAGTGGTGGCTCCTCTTGCTCACATGTCATACAGTGATCAGTTGGATCATAAAAAGAACTCATTGTCGCAGGTTCTCAAAAAACTTGTAAGAGCTTTCATCCTTTACAATTTGCTTCTATAGTTAACTTCATCTTACAATTAATTATTTGTCGAATATAATTCTTGACCATTCAATTTACACTGACAGACAAGGAATGCCCGAAAAGCTTGTCCAAACGGTGTTTCTCTTCCTGAGTGGATATTAAAATCAAGGGATATAGGTACATACTTTCCTACCCGATTCTCCATTTAAATTGTTATTATTACAGACTGATCCTGATGTTTTTGTACCTTCAAGGTGGTCTTCCATGCAATTTTGAGGGTATTCTCGAATCACCAATTATAAATGGATACCGTAACAAGTGTGAGTTTTCGGTTGGATACTCTTTGGAGGGCAAGCCAACTGTGGGGTTTATGTTGGGAAATTTCAGGTCAATTCAACATTACTTTTTTTTTTTTTGTTCACTTGCTTCTTGGCCTTGAGTGATTTGTGATGGATTTAAAAATTGCGCAAGGAGGGTGTTACAGCTGTTGAAGAACCTGAAAATTGTCCCAATGTTTCTAGAATTTCTGCAACTTTCAAGCTTGCCAATTTGGAACAGATTTAAGAATGTTGGGTTTTGGCGTCAATTGACGTTAAGGTTGAATTGAGGTGTTCTGGAAGATTTAAGAAATATAATTTCCCCTGATAATCATCCAGTCGATTTCCTATTGACAATTCTATTCTGTAAAACCATGGAAGGTTCGAGAAGGACGGATTCCAAGGAAGTTGA

mRNA sequence

ATGAGGAACTACTTGAATGAACAGAGTATTCTTTTTAAATCCGCAAAGAAGAAGAAAGGCATGACTGTAGGTTTTGTTACTTTTGAAAGTACAGAACAGTTGAAAAGTGCTGTTGAGGAGTTAGAAGGAAAAACCATTGGCAAAAAGAATTTGAAGGTTGCAGACATGATTCCCAGATCATTTGATAAGACAATTAAATCATCAATGGATCGAGATAATACCTATGAACCTTCAGTGGCAGTCTCTTTATCATCAAATGATGGTGAAGATGCTGCTAACATAAATGATGGGAATTCTATTCCTAATGATTTAGTTTCGAAGGGAAAAAGTGCACGTGAAGTGGTGGCTCCTCTTGCTCACATGTCATACAGTGATCAGTTGGATCATAAAAAGAACTCATTGTCGCAGGTTCTCAAAAAACTTACAAGGAATGCCCGAAAAGCTTGTCCAAACGGTGTTTCTCTTCCTGAGTGGATATTAAAATCAAGGGATATAGGTGGTCTTCCATGCAATTTTGAGGGTATTCTCGAATCACCAATTATAAATGGATACCGTAACAAGTGTGAGTTTTCGGTTGGATACTCTTTGGAGGGCAAGCCAACTGTGGGGTTTATGTTGGGAAATTTCAGGTTCGAGAAGGACGGATTCCAAGGAAGTTGA

Coding sequence (CDS)

ATGAGGAACTACTTGAATGAACAGAGTATTCTTTTTAAATCCGCAAAGAAGAAGAAAGGCATGACTGTAGGTTTTGTTACTTTTGAAAGTACAGAACAGTTGAAAAGTGCTGTTGAGGAGTTAGAAGGAAAAACCATTGGCAAAAAGAATTTGAAGGTTGCAGACATGATTCCCAGATCATTTGATAAGACAATTAAATCATCAATGGATCGAGATAATACCTATGAACCTTCAGTGGCAGTCTCTTTATCATCAAATGATGGTGAAGATGCTGCTAACATAAATGATGGGAATTCTATTCCTAATGATTTAGTTTCGAAGGGAAAAAGTGCACGTGAAGTGGTGGCTCCTCTTGCTCACATGTCATACAGTGATCAGTTGGATCATAAAAAGAACTCATTGTCGCAGGTTCTCAAAAAACTTACAAGGAATGCCCGAAAAGCTTGTCCAAACGGTGTTTCTCTTCCTGAGTGGATATTAAAATCAAGGGATATAGGTGGTCTTCCATGCAATTTTGAGGGTATTCTCGAATCACCAATTATAAATGGATACCGTAACAAGTGTGAGTTTTCGGTTGGATACTCTTTGGAGGGCAAGCCAACTGTGGGGTTTATGTTGGGAAATTTCAGGTTCGAGAAGGACGGATTCCAAGGAAGTTGA

Protein sequence

MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRSFDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAHMSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPIINGYRNKCEFSVGYSLEGKPTVGFMLGNFRFEKDGFQGS

Homology

[Close]

BLAST of Lcy07g016440 vs. ExPASy Swiss-Prot
Match: Q8L7S3 (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=At2g28450 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.5e-59
Identity = 115/209 (55.02%), Postives = 142/209 (67.94%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           ++ +L EQ +L+KSAKK++GM VGFVTFE+ EQL+S VE L+GKT+   NLK+AD++PR+
Sbjct: 186 LKKFLGEQGVLYKSAKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRT 245

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDK                                      ND     KSAR+ V PLA+
Sbjct: 246 FDK--------------------------------------NDARKSVKSARDAVTPLAY 305

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           +SY+DQL+ KK S+ Q+LKKL RNARKACPNG SLP+W+L SRD GGL CN EGI+ESPI
Sbjct: 306 LSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGGLACNLEGIIESPI 356

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNF 210
            NGYRNKCEFSVG SL+GKPTVGF LG+F
Sbjct: 366 TNGYRNKCEFSVGLSLQGKPTVGFSLGSF 356

[Close]

BLAST of Lcy07g016440 vs. ExPASy Swiss-Prot
Match: Q96GJ1 (tRNA (uracil(54)-C(5))-methyltransferase homolog OS=Homo sapiens OX=9606 GN=TRMT2B PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 113 EVVAPLAHMSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNF 172
           +VV PL  +SY +QL  K  +  ++L++L    +    NGVS+   + KS     L C  
Sbjct: 86  DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSE---RLSCLL 145

Query: 173 EGILESPIINGYRNKCEFSVGYSLEGKP-TVGFMLGNFR 211
             I+ SP+INGYRNK  FSV    +G P TVGF LG +R
Sbjct: 146 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWR 179

[Close]

BLAST of Lcy07g016440 vs. ExPASy Swiss-Prot
Match: Q5RFM7 (tRNA (uracil(54)-C(5))-methyltransferase homolog OS=Pongo abelii OX=9601 GN=TRMT2B PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 113 EVVAPLAHMSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNF 172
           +VV PL  +SY +QL  K  +  ++L++L    +    NGVS+   + KS     L C  
Sbjct: 68  DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSE---RLSCLL 127

Query: 173 EGILESPIINGYRNKCEFSVGYSLEGKP-TVGFMLGNFR 211
             I+ SP+INGYRNK  FSV    +G P TVGF LG +R
Sbjct: 128 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWR 161

[Close]

BLAST of Lcy07g016440 vs. ExPASy Swiss-Prot
Match: Q8BNV1 (tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus OX=10090 GN=Trmt2a PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-10
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 113 EVVAPLAHMSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNF 172
           +VV PL  + Y++QL+ K+    +VL+KL +       N   LP  +L+ +      C  
Sbjct: 160 DVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNKACCPL 219

Query: 173 EGILESPIINGYRNKCEFSVGYSLEGKP-TVGFMLGNFR 211
           EG+  SP    YRNKCEF VG  ++GK  TVG  LG ++
Sbjct: 220 EGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYK 256

[Close]

BLAST of Lcy07g016440 vs. ExPASy Swiss-Prot
Match: Q8IZ69 (tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens OX=9606 GN=TRMT2A PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 113 EVVAPLAHMSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLP-CN 172
           +VV PL  + Y++QL+ K+    QVL+KL +       N   LP W+L+ R       C 
Sbjct: 170 DVVTPLWTVPYAEQLERKQLECEQVLQKLAKEI--GSTNRALLP-WLLEQRHKHNKACCP 229

Query: 173 FEGILESPIINGYRNKCEFSVGYSLEGKP-TVGFMLGNFR 211
            EG+  SP    YRNKCEF VG  ++G+  TVG  LG ++
Sbjct: 230 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYK 266

[Close]

BLAST of Lcy07g016440 vs. ExPASy TrEMBL
Match: A0A6J1CGT5 (zinc finger CCCH domain-containing protein 24 OS=Momordica charantia OX=3673 GN=LOC111011085 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.8e-98
Identity = 183/210 (87.14%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +RNYLNEQ I+FKSAKKKKGMTVGFV+FESTEQLKSAVEE+EGKTIGKKNLKVAD+IPRS
Sbjct: 177 LRNYLNEQGIIFKSAKKKKGMTVGFVSFESTEQLKSAVEEIEGKTIGKKNLKVADVIPRS 236

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           F+KT +S MDR  T E S+ V LSSND EDA N NDGNS PND VSKGKSAR+VVAPLAH
Sbjct: 237 FEKTTRSKMDRQKTSESSMTVPLSSNDAEDATN-NDGNSTPNDSVSKGKSARDVVAPLAH 296

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSLSQ+LKKLTRNARKACPNGVSLPEWILK+RDIGGLPCN EGILESP+
Sbjct: 297 MSYSDQLDHKKNSLSQLLKKLTRNARKACPNGVSLPEWILKARDIGGLPCNLEGILESPV 356

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           INGYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 357 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 385

[Close]

BLAST of Lcy07g016440 vs. ExPASy TrEMBL
Match: A0A6J1K3X1 (zinc finger CCCH domain-containing protein 24 OS=Cucurbita maxima OX=3661 GN=LOC111490955 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.1e-95
Identity = 179/210 (85.24%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +R+YL EQ + F+SAKKKKGMTVGFV FESTEQLKSAVEEL+GKTIG KNLKVAD+IPRS
Sbjct: 184 LRDYLKEQGVQFQSAKKKKGMTVGFVHFESTEQLKSAVEELDGKTIGNKNLKVADVIPRS 243

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDKTI+SS DRDN  + SVAVSLSSNDGED  NIN GN +PND VSK +SAREVVAPLAH
Sbjct: 244 FDKTIQSSRDRDNISKSSVAVSLSSNDGEDDDNINGGNCVPNDSVSKVRSAREVVAPLAH 303

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSLSQVLKKLTRNARKACP G+SLP+WILKSRDIGGLPCNFEG+L+SPI
Sbjct: 304 MSYSDQLDHKKNSLSQVLKKLTRNARKACPTGISLPDWILKSRDIGGLPCNFEGVLKSPI 363

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           I+GYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 364 IDGYRNKCEFSVGYSLEGKPTVGFMLGNFR 393

[Close]

BLAST of Lcy07g016440 vs. ExPASy TrEMBL
Match: A0A6J1H2G6 (zinc finger CCCH domain-containing protein 24 OS=Cucurbita moschata OX=3662 GN=LOC111459421 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.4e-95
Identity = 178/210 (84.76%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +R+YL EQ + F+SAKKKKGMTVGFV FESTEQLKSAVEEL+GKTIG KNLKVAD+IPRS
Sbjct: 184 LRDYLKEQGVHFQSAKKKKGMTVGFVHFESTEQLKSAVEELDGKTIGNKNLKVADVIPRS 243

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDKTI+SS DRDN  + SVAVS+SSNDGEDA +IN GN +PND VSK KSAREVVAPLAH
Sbjct: 244 FDKTIQSSRDRDNISKSSVAVSVSSNDGEDADSINGGNCVPNDSVSKVKSAREVVAPLAH 303

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSL+QVLKKLTRNARKACP G+SLP+WILKSRDIGGLPCNFEG+L+SPI
Sbjct: 304 MSYSDQLDHKKNSLTQVLKKLTRNARKACPTGISLPDWILKSRDIGGLPCNFEGVLKSPI 363

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           I+GYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 364 IDGYRNKCEFSVGYSLEGKPTVGFMLGNFR 393

[Close]

BLAST of Lcy07g016440 vs. ExPASy TrEMBL
Match: A0A0A0KDA7 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G140820 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.1e-95
Identity = 179/210 (85.24%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +RNYLNE S+LFKSAKKKKGMTVGFV+FESTEQL+S+VEEL+GK IGKKNLKVAD+IPRS
Sbjct: 185 LRNYLNELSVLFKSAKKKKGMTVGFVSFESTEQLRSSVEELQGKIIGKKNLKVADVIPRS 244

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           F+K IKSS+D DN+   S A SLSSNDGEDA NINDG+S PND V KGKSAREVVAPLAH
Sbjct: 245 FEKKIKSSIDCDNSSVSSAAFSLSSNDGEDAGNINDGSSTPNDSVLKGKSAREVVAPLAH 304

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSL  VLKKLTRNARKACP+GVSLPEWILKSRDIGG+ C+FEGI+ESPI
Sbjct: 305 MSYSDQLDHKKNSLLHVLKKLTRNARKACPHGVSLPEWILKSRDIGGIACSFEGIIESPI 364

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           INGYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 365 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 394

[Close]

BLAST of Lcy07g016440 vs. ExPASy TrEMBL
Match: A0A5D3CSW9 (Zinc finger CCCH domain-containing protein 24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00210 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.4e-95
Identity = 178/210 (84.76%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +RNYLNEQS+LFKSAKKKKGMTVGFV+FESTEQL+S+VEEL+GK IGKKNLKVAD+IPRS
Sbjct: 183 LRNYLNEQSVLFKSAKKKKGMTVGFVSFESTEQLRSSVEELQGKIIGKKNLKVADVIPRS 242

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           F+K IKSSMD DN+   S A SL S+DG+DA NINDG+S PND V KGKSAREVVAPLAH
Sbjct: 243 FEKKIKSSMDCDNSSVSSAAFSLPSDDGQDAGNINDGSSTPNDSVLKGKSAREVVAPLAH 302

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSL  VLKKLTRNARKACP+GVSLPEWILKSRDIGG+ C+FEGI+ESPI
Sbjct: 303 MSYSDQLDHKKNSLLHVLKKLTRNARKACPHGVSLPEWILKSRDIGGIACSFEGIIESPI 362

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           INGYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 363 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 392

[Close]

BLAST of Lcy07g016440 vs. NCBI nr
Match: XP_022140397.1 (zinc finger CCCH domain-containing protein 24 [Momordica charantia])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 183/210 (87.14%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +RNYLNEQ I+FKSAKKKKGMTVGFV+FESTEQLKSAVEE+EGKTIGKKNLKVAD+IPRS
Sbjct: 177 LRNYLNEQGIIFKSAKKKKGMTVGFVSFESTEQLKSAVEEIEGKTIGKKNLKVADVIPRS 236

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           F+KT +S MDR  T E S+ V LSSND EDA N NDGNS PND VSKGKSAR+VVAPLAH
Sbjct: 237 FEKTTRSKMDRQKTSESSMTVPLSSNDAEDATN-NDGNSTPNDSVSKGKSARDVVAPLAH 296

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSLSQ+LKKLTRNARKACPNGVSLPEWILK+RDIGGLPCN EGILESP+
Sbjct: 297 MSYSDQLDHKKNSLSQLLKKLTRNARKACPNGVSLPEWILKARDIGGLPCNLEGILESPV 356

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           INGYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 357 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 385

[Close]

BLAST of Lcy07g016440 vs. NCBI nr
Match: XP_023534370.1 (zinc finger CCCH domain-containing protein 24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 181/210 (86.19%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +R+YL EQ I F+SAKKKKGMTVGFV FESTEQLKSAVEEL+GKTIG KNLKVAD+IPRS
Sbjct: 184 LRDYLKEQGIHFQSAKKKKGMTVGFVHFESTEQLKSAVEELDGKTIGNKNLKVADVIPRS 243

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDKTI+SS DRDN  + SVAVSLSSNDGEDA +IN GN +PND VSK KSAREVVAPLAH
Sbjct: 244 FDKTIQSSRDRDNISKSSVAVSLSSNDGEDADSINGGNCVPNDSVSKVKSAREVVAPLAH 303

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSL+QVLKKLTRNARKACP G+SLP+WILKSRDIGGLPCNFEGIL+SPI
Sbjct: 304 MSYSDQLDHKKNSLTQVLKKLTRNARKACPTGISLPDWILKSRDIGGLPCNFEGILKSPI 363

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           I+GYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 364 IDGYRNKCEFSVGYSLEGKPTVGFMLGNFR 393

[Close]

BLAST of Lcy07g016440 vs. NCBI nr
Match: XP_022995395.1 (zinc finger CCCH domain-containing protein 24 [Cucurbita maxima])

HSP 1 Score: 359.4 bits (921), Expect = 2.2e-95
Identity = 179/210 (85.24%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +R+YL EQ + F+SAKKKKGMTVGFV FESTEQLKSAVEEL+GKTIG KNLKVAD+IPRS
Sbjct: 184 LRDYLKEQGVQFQSAKKKKGMTVGFVHFESTEQLKSAVEELDGKTIGNKNLKVADVIPRS 243

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDKTI+SS DRDN  + SVAVSLSSNDGED  NIN GN +PND VSK +SAREVVAPLAH
Sbjct: 244 FDKTIQSSRDRDNISKSSVAVSLSSNDGEDDDNINGGNCVPNDSVSKVRSAREVVAPLAH 303

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSLSQVLKKLTRNARKACP G+SLP+WILKSRDIGGLPCNFEG+L+SPI
Sbjct: 304 MSYSDQLDHKKNSLSQVLKKLTRNARKACPTGISLPDWILKSRDIGGLPCNFEGVLKSPI 363

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           I+GYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 364 IDGYRNKCEFSVGYSLEGKPTVGFMLGNFR 393

[Close]

BLAST of Lcy07g016440 vs. NCBI nr
Match: XP_022958090.1 (zinc finger CCCH domain-containing protein 24 [Cucurbita moschata])

HSP 1 Score: 358.2 bits (918), Expect = 5.0e-95
Identity = 178/210 (84.76%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +R+YL EQ + F+SAKKKKGMTVGFV FESTEQLKSAVEEL+GKTIG KNLKVAD+IPRS
Sbjct: 184 LRDYLKEQGVHFQSAKKKKGMTVGFVHFESTEQLKSAVEELDGKTIGNKNLKVADVIPRS 243

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDKTI+SS DRDN  + SVAVS+SSNDGEDA +IN GN +PND VSK KSAREVVAPLAH
Sbjct: 244 FDKTIQSSRDRDNISKSSVAVSVSSNDGEDADSINGGNCVPNDSVSKVKSAREVVAPLAH 303

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSL+QVLKKLTRNARKACP G+SLP+WILKSRDIGGLPCNFEG+L+SPI
Sbjct: 304 MSYSDQLDHKKNSLTQVLKKLTRNARKACPTGISLPDWILKSRDIGGLPCNFEGVLKSPI 363

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           I+GYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 364 IDGYRNKCEFSVGYSLEGKPTVGFMLGNFR 393

[Close]

BLAST of Lcy07g016440 vs. NCBI nr
Match: XP_038901963.1 (zinc finger CCCH domain-containing protein 24 [Benincasa hispida])

HSP 1 Score: 358.2 bits (918), Expect = 5.0e-95
Identity = 180/210 (85.71%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           +RNYLNEQSILF  AKKKKGMTVGFV+F+STEQLKS+VEEL+GK IGKKNLKVAD+IPRS
Sbjct: 184 LRNYLNEQSILFNFAKKKKGMTVGFVSFKSTEQLKSSVEELQGKVIGKKNLKVADVIPRS 243

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           F+KTIKS +D DN+   SV VSL+SNDGEDAANINDG+S P+D VSKGKSAREVVAPLAH
Sbjct: 244 FEKTIKSLIDCDNSSVSSVVVSLTSNDGEDAANINDGSSTPSDSVSKGKSAREVVAPLAH 303

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           MSYSDQLDHKKNSL  VLKKLTRNARKACP+GVSLPEWILKSRDIGG+ C+FEGILESPI
Sbjct: 304 MSYSDQLDHKKNSLLHVLKKLTRNARKACPHGVSLPEWILKSRDIGGIACSFEGILESPI 363

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNFR 211
           I+GYRNKCEFSVGYSLEGKPTVGFMLGNFR
Sbjct: 364 IDGYRNKCEFSVGYSLEGKPTVGFMLGNFR 393

[Close]

BLAST of Lcy07g016440 vs. TAIR 10
Match: AT2G28450.1 (zinc finger (CCCH-type) family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.5e-60
Identity = 115/209 (55.02%), Postives = 142/209 (67.94%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           ++ +L EQ +L+KSAKK++GM VGFVTFE+ EQL+S VE L+GKT+   NLK+AD++PR+
Sbjct: 186 LKKFLGEQGVLYKSAKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRT 245

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDK                                      ND     KSAR+ V PLA+
Sbjct: 246 FDK--------------------------------------NDARKSVKSARDAVTPLAY 305

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           +SY+DQL+ KK S+ Q+LKKL RNARKACPNG SLP+W+L SRD GGL CN EGI+ESPI
Sbjct: 306 LSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGGLACNLEGIIESPI 356

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNF 210
            NGYRNKCEFSVG SL+GKPTVGF LG+F
Sbjct: 366 TNGYRNKCEFSVGLSLQGKPTVGFSLGSF 356

[Close]

BLAST of Lcy07g016440 vs. TAIR 10
Match: AT2G28450.2 (zinc finger (CCCH-type) family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.5e-60
Identity = 115/209 (55.02%), Postives = 142/209 (67.94%), Query Frame = 0


Query: 1   MRNYLNEQSILFKSAKKKKGMTVGFVTFESTEQLKSAVEELEGKTIGKKNLKVADMIPRS 60
           ++ +L EQ +L+KSAKK++GM VGFVTFE+ EQL+S VE L+GKT+   NLK+AD++PR+
Sbjct: 186 LKKFLGEQGVLYKSAKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRT 245

Query: 61  FDKTIKSSMDRDNTYEPSVAVSLSSNDGEDAANINDGNSIPNDLVSKGKSAREVVAPLAH 120
           FDK                                      ND     KSAR+ V PLA+
Sbjct: 246 FDK--------------------------------------NDARKSVKSARDAVTPLAY 305

Query: 121 MSYSDQLDHKKNSLSQVLKKLTRNARKACPNGVSLPEWILKSRDIGGLPCNFEGILESPI 180
           +SY+DQL+ KK S+ Q+LKKL RNARKACPNG SLP+W+L SRD GGL CN EGI+ESPI
Sbjct: 306 LSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGGLACNLEGIIESPI 356

Query: 181 INGYRNKCEFSVGYSLEGKPTVGFMLGNF 210
            NGYRNKCEFSVG SL+GKPTVGF LG+F
Sbjct: 366 TNGYRNKCEFSVGLSLQGKPTVGFSLGSF 356

The following BLAST results are available for this feature:

BLAST of Lcy07g016440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7S3	3.5e-59	55.02	Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q96GJ1	3.9e-10	41.41	tRNA (uracil(54)-C(5))-methyltransferase homolog OS=Homo sapiens OX=9606 GN=TRMT...	[more]
Q5RFM7	3.9e-10	41.41	tRNA (uracil(54)-C(5))-methyltransferase homolog OS=Pongo abelii OX=9601 GN=TRMT...	[more]
Q8BNV1	8.7e-10	37.37	tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus OX=10090 GN=Trmt2a ...	[more]
Q8IZ69	1.9e-09	39.00	tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens OX=9606 GN=TRMT2A P...	[more]

BLAST of Lcy07g016440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGT5	8.8e-98	87.14	zinc finger CCCH domain-containing protein 24 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1K3X1	1.1e-95	85.24	zinc finger CCCH domain-containing protein 24 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1H2G6	2.4e-95	84.76	zinc finger CCCH domain-containing protein 24 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0KDA7	3.1e-95	85.24	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G140820 P...	[more]
A0A5D3CSW9	5.4e-95	84.76	Zinc finger CCCH domain-containing protein 24 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy07g016440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140397.1	1.8e-97	87.14	zinc finger CCCH domain-containing protein 24 [Momordica charantia]	[more]
XP_023534370.1	1.3e-95	86.19	zinc finger CCCH domain-containing protein 24 [Cucurbita pepo subsp. pepo]	[more]
XP_022995395.1	2.2e-95	85.24	zinc finger CCCH domain-containing protein 24 [Cucurbita maxima]	[more]
XP_022958090.1	5.0e-95	84.76	zinc finger CCCH domain-containing protein 24 [Cucurbita moschata]	[more]
XP_038901963.1	5.0e-95	85.71	zinc finger CCCH domain-containing protein 24 [Benincasa hispida]	[more]

BLAST of Lcy07g016440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28450.1	2.5e-60	55.02	zinc finger (CCCH-type) family protein	[more]
AT2G28450.2	2.5e-60	55.02	zinc finger (CCCH-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..105
None	No IPR available	PANTHER	PTHR45904:SF2	TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A	coord: 2..210
None	No IPR available	PANTHER	PTHR45904	TRNA (URACIL-5-)-METHYLTRANSFERASE	coord: 2..210
None	No IPR available	CDD	cd00590	RRM_SF	coord: 8..53 e-value: 1.00752E-5 score: 40.3661
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..57 e-value: 2.2E-6 score: 29.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 16..52 e-value: 1.4E-5 score: 24.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g016440.1	Lcy07g016440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding