Lcy07g016370 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g016370
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionVoltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
LocationChr07: 45111700 .. 45112463 (+)
RNA-Seq ExpressionLcy07g016370
SyntenyLcy07g016370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAATGAAGATATCTACAAGAGGATAGATATTTGAGATATTTTCGATATTTTTAGAAAGCATGGGGCTCTTCGAAACTCGAGTAAAGTCCACAGTAACATTAGTGTGACCCACCCCACCAAATCCAAACCCCCATCGCACACAGAATTCAAATCCTTCATCCCTATCCAATTCCCGAATTCAATCATTGCTCCATTTTCCCGATTTCCAGAATCTCACCAAACCCTAACCCTAAAATCTTCTTCTTCAGCCCCTTGTTATAAAATCTCTTTTCTAGAGCGATAAATTTCTTCACATGGAGGCGGAGACGGCGGTCGGGGCGATTCTGGGGAGGCTGGGGCGCCATTGCTATGCGGTGTTGTGTTTGGGAGTGCTTCTTTTGACGGTCGCCGTCGTTCACTACGTCGGCGACGGCGAGCCCACCGATCCGCGCGAGCGGAGCAAGCGACGCCTTCGCGCCTTGCACGGCTCGCCGATTCGCGGCGGCGATGGCGGGCGTGATGCGGCTGTGGGTTTCAATCGTGGTGTTTCGCTGTAAATTGGAGTGATTGGCGGCTAGGCTGAGTCTGAGGCAATCGCTTTTTTTTTTTTTTCTGAAGTTTTTGTAAAAGGCTAATAAATGTTTACTCCTCTCATATCCTGTGGCAAAAATGTAAATTATTTGCCCTTTTTTTGTGTGTATATATGTTTTTATGATATTAAAATGTGATATTGATTAGCATATAATAATTGAGAAATGGTTATTTGTTTGTGTTTGCTCGAA

mRNA sequence

AATTAATGAAGATATCTACAAGAGGATAGATATTTGAGATATTTTCGATATTTTTAGAAAGCATGGGGCTCTTCGAAACTCGAGTAAAGTCCACAGTAACATTAGTGTGACCCACCCCACCAAATCCAAACCCCCATCGCACACAGAATTCAAATCCTTCATCCCTATCCAATTCCCGAATTCAATCATTGCTCCATTTTCCCGATTTCCAGAATCTCACCAAACCCTAACCCTAAAATCTTCTTCTTCAGCCCCTTGTTATAAAATCTCTTTTCTAGAGCGATAAATTTCTTCACATGGAGGCGGAGACGGCGGTCGGGGCGATTCTGGGGAGGCTGGGGCGCCATTGCTATGCGGTGTTGTGTTTGGGAGTGCTTCTTTTGACGGTCGCCGTCGTTCACTACGTCGGCGACGGCGAGCCCACCGATCCGCGCGAGCGGAGCAAGCGACGCCTTCGCGCCTTGCACGGCTCGCCGATTCGCGGCGGCGATGGCGGGCGTGATGCGGCTGTGGGTTTCAATCGTGGTGTTTCGCTGTAAATTGGAGTGATTGGCGGCTAGGCTGAGTCTGAGGCAATCGCTTTTTTTTTTTTTTCTGAAGTTTTTGTAAAAGGCTAATAAATGTTTACTCCTCTCATATCCTGTGGCAAAAATGTAAATTATTTGCCCTTTTTTTGTGTGTATATATGTTTTTATGATATTAAAATGTGATATTGATTAGCATATAATAATTGAGAAATGGTTATTTGTTTGTGTTTGCTCGAA

Coding sequence (CDS)

ATGGAGGCGGAGACGGCGGTCGGGGCGATTCTGGGGAGGCTGGGGCGCCATTGCTATGCGGTGTTGTGTTTGGGAGTGCTTCTTTTGACGGTCGCCGTCGTTCACTACGTCGGCGACGGCGAGCCCACCGATCCGCGCGAGCGGAGCAAGCGACGCCTTCGCGCCTTGCACGGCTCGCCGATTCGCGGCGGCGATGGCGGGCGTGATGCGGCTGTGGGTTTCAATCGTGGTGTTTCGCTGTAA

Protein sequence

MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSPIRGGDGGRDAAVGFNRGVSL
Homology
[Close]
BLAST of Lcy07g016370 vs. ExPASy TrEMBL
Match: A0A0A0KC65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSP 60
          MEAETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRER+KRRLR LHGS 
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 IRGGDGGR 69
          I G D  R
Sbjct: 61 ILGEDAAR 68

[Close]
BLAST of Lcy07g016370 vs. ExPASy TrEMBL
Match: A0A660KR43 (MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.9e-12
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 8   GAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSPIR 63
           G +LG+LGR CYAVLCLGVLL++V + H V   EPTDPRER+ RRLR L G P R
Sbjct: 570 GGLLGKLGRQCYAVLCLGVLLVSVTIAHCVSAAEPTDPRERAGRRLRDLRGGPFR 624

[Close]
BLAST of Lcy07g016370 vs. ExPASy TrEMBL
Match: A0A5E4FUM3 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSPIR 63
          +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ER++RRLRA+HG P+R
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLR 59

[Close]
BLAST of Lcy07g016370 vs. ExPASy TrEMBL
Match: A0A7N2KN99 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 7  VGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHG 59
          V  +LG+L RHCYAVLCLGVLLL+V + HYV   EP+DPRER+ RRLRA HG
Sbjct: 4  VDGLLGKLVRHCYAVLCLGVLLLSVTIAHYVPAAEPSDPRERTIRRLRASHG 55

[Close]
BLAST of Lcy07g016370 vs. ExPASy TrEMBL
Match: A0A6J5XGV1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35900 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-11
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSPIR 63
          +LG+LGR CYAVLCLGV+LL V + +YVG  E  DP ER++RRLRA+HG P R
Sbjct: 7  LLGKLGRQCYAVLCLGVILLAVTLANYVGAEEQEDPMERTRRRLRAIHGPPFR 59

[Close]
BLAST of Lcy07g016370 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 65/79 (82.28%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 1  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSP 60
          ME ETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLR LH   
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLH--- 60

Query: 61 IRGGDGGRDAAVGFNRGVS 80
               GGRD    FNRGVS
Sbjct: 61 -----GGRDPPPVFNRGVS 71

[Close]
BLAST of Lcy07g016370 vs. NCBI nr
Match: XP_023512260.1 (syntaxin-71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 65/79 (82.28%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 1  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSP 60
          ME ETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLR LH   
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLH--- 60

Query: 61 IRGGDGGRDAAVGFNRGVS 80
               GGRD    FNRGVS
Sbjct: 61 -----GGRDPPPVFNRGVS 71

[Close]
BLAST of Lcy07g016370 vs. NCBI nr
Match: KAE8647058.1 (hypothetical protein Csa_023003, partial [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 1  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSP 60
          MEAETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRER+KRRLR LHGS 
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 IRGGD 66
          I G D
Sbjct: 61 ILGED 65

[Close]
BLAST of Lcy07g016370 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 9.2e-23
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0 

Query: 1  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHG 59
          ME ETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLR LHG
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]
BLAST of Lcy07g016370 vs. NCBI nr
Match: KAE8038882.1 (hypothetical protein FH972_011351 [Carpinus fangiana])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 8   GAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRALHGSPIR 63
           G +LG+LGR CYAVLCLGVLL++V + H V   EPTDPRER+ RRLR L G P R
Sbjct: 570 GGLLGKLGRQCYAVLCLGVLLVSVTIAHCVSAAEPTDPRERAGRRLRDLRGGPFR 624

The following BLAST results are available for this feature:
BLAST of Lcy07g016370 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g016370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC654.0e-2486.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1[more]
A0A660KR437.9e-1265.45MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1[more]
A0A5E4FUM31.8e-1164.15Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1[more]
A0A7N2KN992.3e-1169.23Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6J5XGV15.1e-1164.15Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35900 PE=... [more]
BLAST of Lcy07g016370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010620.13.4e-2582.28Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su... [more]
XP_023512260.13.4e-2582.28syntaxin-71-like [Cucurbita pepo subsp. pepo][more]
KAE8647058.11.9e-2389.23hypothetical protein Csa_023003, partial [Cucumis sativus][more]
KAG6570773.19.2e-2396.55Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su... [more]
KAE8038882.11.6e-1165.45hypothetical protein FH972_011351 [Carpinus fangiana][more]
BLAST of Lcy07g016370 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g016370.1Lcy07g016370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045490 pectin catabolic process
biological_process GO:0050896 response to stimulus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030599 pectinesterase activity