Lcy07g015670 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g015670
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr07: 44519003 .. 44520210 (+)
RNA-Seq Expression	Lcy07g015670
Synteny	Lcy07g015670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATGGTGAGCAAGAATATCACAACAGAGGAGGCGGAGAGGGTTGGCGAAATCCTAGGCATTAAGAAAACAAACTCCCTAGGAGTTTACCTAAGAATACTTTCGCCTCTAGGAATAATTCCCTCGTGTTGAGAAGATTAGGGTCAAAATTGAAAGTATGCTACAAGGTTGGAACGAGAGACTTTTCTCAGTAGGTGGCAAAGAGGTTTTGATCAAGACAGTCATCCAAGTCATCCTTGCGTATACAATGAGTTGTTAAGCTTCCCAAAGGCTTTTACGACGATATAAATAAGATTTGTGCTAGATTTTGGTGGGGCGACATAGGGGACAAAAGGAAAATTCATTGGACCAGTTGGAAGAAGATTTGCAAAAGCAAGGATAGGGGTGGTTTAGGTTTTAGGGACATTAACTCCTTTAACCAAGCCCTCCTGGCCAAATAGAGTTGGAGGATAATGAGAAATCCTGATAGTCTATTATATAAAGTTTTAAGGGATGAAAACTTTCTTAATGCCCCTGCAGGTGGGAATGCCTCCTTGGTATGGAAAAGCATCGTGTGGGGAAGAGAGTTGTTTAAGGATGGTTTTAGATGGCGGGTGGGCAATGGGCACTACATATATATTGGCCAAGGCCCTTGGATTCCTAGACAAGGAAATAGGCCCCCCTGGTGGTGCCTTCGGTGTTGAGAGGGAAGATAATCAAATAGCTGATTAAGGAGAATGAGGGGTGGGATGAAGCGCTGATCTATAGACATTTCATCCCCTTGGATGTTGAAAACATTTTAGATATTCCTCTGGGGAATAGGAATTTGAGGGTTGAAATAATTTGGAATGCTGACCCTAAAGGTGTCTTTAGTGTTAAAAGCGCCTATCATTTAAAGGAGAACAAGCTGCAAGTTAAGGAGGCCTCGGGTTCTGATATCAAAGCTCAAAGGAAGAGTTGGAGGTCTATTCGGGGTCTCAACATCATCCCAAGAGCTAAAATTGGTTTGTGGAAGATCATTAAAAACTCAATCCCTTCTAAAGAAAATCTTCTATCTAGAGGCTTGGATATTAACCCAATCGGTGATATGTGCAGGTGCTACAAGAAATCTTCGAGCCACATATTCTGGAGCTGTAAAAAGGTAAAGCATATATGGCCTATTTTTTTTCCCAAATCTTATGGGCATTTCGGGTCTTTGCAGGGAAAACATCAATATGGGCGAGTAG

mRNA sequence

ATGATTATGGTGAGCAAGAATATCACAACAGAGGAGGCGGAGAGGCTGATTAAGGAGAATGAGGGGTGGGATGAAGCGCTGATCTATAGACATTTCATCCCCTTGGATGTTGAAAACATTTTAGATATTCCTCTGGGGAATAGGAATTTGAGGGTTGAAATAATTTGGAATGCTGACCCTAAAGGTGTCTTTAGTGTTAAAAGCGCCTATCATTTAAAGGAGAACAAGCTGCAAGTTAAGGAGGCCTCGGGTTCTGATATCAAAGCTCAAAGGAAGAGTTGGAGGTCTATTCGGGGTCTCAACATCATCCCAAGAGCTAAAATTGGTGCTACAAGAAATCTTCGAGCCACATATTCTGGAGCTGTAAAAAGGGAAAACATCAATATGGGCGAGTAG

Coding sequence (CDS)

ATGATTATGGTGAGCAAGAATATCACAACAGAGGAGGCGGAGAGGCTGATTAAGGAGAATGAGGGGTGGGATGAAGCGCTGATCTATAGACATTTCATCCCCTTGGATGTTGAAAACATTTTAGATATTCCTCTGGGGAATAGGAATTTGAGGGTTGAAATAATTTGGAATGCTGACCCTAAAGGTGTCTTTAGTGTTAAAAGCGCCTATCATTTAAAGGAGAACAAGCTGCAAGTTAAGGAGGCCTCGGGTTCTGATATCAAAGCTCAAAGGAAGAGTTGGAGGTCTATTCGGGGTCTCAACATCATCCCAAGAGCTAAAATTGGTGCTACAAGAAATCTTCGAGCCACATATTCTGGAGCTGTAAAAAGGGAAAACATCAATATGGGCGAGTAG

Protein sequence

MIMVSKNITTEEAERLIKENEGWDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPKGVFSVKSAYHLKENKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGATRNLRATYSGAVKRENINMGE

Homology

[Close]

BLAST of Lcy07g015670 vs. ExPASy TrEMBL
Match: B8AFP4 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_06800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 2   IMVSKNITTEEAERLIKENEGWDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPK 61
           I   +N        LI ++E WD   I +HF+P+D E IL+I L +R     I W+ D  
Sbjct: 356 ISAKRNCRLRWVSDLIDQSESWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDRL 415

Query: 62  GVFSVKSAYHLKENKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGATR 113
           G FSV+SAYHL     QV E S S      ++W ++   N   + KI A R
Sbjct: 416 GRFSVRSAYHLAIALAQVDEGSSSSGNGNSRAWNALWKCNAPQKVKIFAWR 466

[Close]

BLAST of Lcy07g015670 vs. ExPASy TrEMBL
Match: A0A2N9GJ35 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 23   WDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPKGVFSVKSAYHLKENKLQVKEA 82
            WD  L+ R F+P DVE I  IPL +R     +IW+   +GVFSV+SAYH+  N+ Q +EA
Sbjct: 1314 WDVNLLDRFFLPRDVEAIKSIPLSHRRPADLLIWSGTKRGVFSVRSAYHMLLNQSQAREA 1373

Query: 83   -SGSDIKAQRKS-WRSIRGLNIIPRAKIGATRNLRA 117
             S S   +QRK  W +I   ++ P+ K+   R  +A
Sbjct: 1374 MSSSASGSQRKQPWSAIWAASVQPKVKLFIWRACKA 1409

[Close]

BLAST of Lcy07g015670 vs. ExPASy TrEMBL
Match: A0A2N9FB16 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12200 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 23   WDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPKGVFSVKSAYHLKENKLQVKEA 82
            WD  L+ R F+P DVE I  IPL +R     +IW+   +GVFSV+SAYH+  N+ Q +EA
Sbjct: 1168 WDVNLLDRFFLPRDVEAIKSIPLSHRRPADLLIWSGTKRGVFSVRSAYHMLLNQSQAREA 1227

Query: 83   -SGSDIKAQRKS-WRSIRGLNIIPRAKIGATRNLRA 117
             S S   +QRK  W +I   ++ P+ K+   R  +A
Sbjct: 1228 MSSSASGSQRKQPWSAIWAASVQPKVKLFIWRACKA 1263

[Close]

BLAST of Lcy07g015670 vs. ExPASy TrEMBL
Match: B8B9K5 (zf-RVT domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30257 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 2   IMVSKNITTEEAERLIKENEGWDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPK 61
           I   +N        LI  +  WD   I  HF+P+DVE IL+I L +R     I W+ D  
Sbjct: 85  ISAKRNCRLRWVSDLIDRSGSWDTDKISHHFLPMDVEAILNIRLSSRLEEDFIAWHPDRL 144

Query: 62  GVFSVKSAYHLKENKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGATR 113
           G FSV+SAYHL     QV + S S      ++W ++   N   + KI A R
Sbjct: 145 GRFSVRSAYHLAVALAQVDDGSSSSGNGSSRAWNALWKCNAPQKVKIFAWR 195

[Close]

BLAST of Lcy07g015670 vs. ExPASy TrEMBL
Match: A0A6P9F758 (uncharacterized protein LOC118349891 OS=Juglans regia OX=51240 GN=LOC118349891 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 23  WDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPKGVFSVKSAYHLKENKLQVKEA 82
           W+E  I   F   + + I+ IPL  R++   +IW    KG+FSVKSAYHL+E++ +V   
Sbjct: 788 WNEGFIKSIFSKEEADMIISIPLSKRDVDDRMIWGPSKKGIFSVKSAYHLEESRSRVSIG 847

Query: 83  SGSDIKAQRKSWRSIRGLNI 103
             S+     K W+SI GLNI
Sbjct: 848 ESSEQNGLGKLWKSIWGLNI 867

[Close]

BLAST of Lcy07g015670 vs. NCBI nr
Match: EEC72938.1 (hypothetical protein OsI_06800 [Oryza sativa Indica Group])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 2   IMVSKNITTEEAERLIKENEGWDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPK 61
           I   +N        LI ++E WD   I +HF+P+D E IL+I L +R     I W+ D  
Sbjct: 356 ISAKRNCRLRWVSDLIDQSESWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDRL 415

Query: 62  GVFSVKSAYHLKENKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGATR 113
           G FSV+SAYHL     QV E S S      ++W ++   N   + KI A R
Sbjct: 416 GRFSVRSAYHLAIALAQVDEGSSSSGNGNSRAWNALWKCNAPQKVKIFAWR 466

[Close]

BLAST of Lcy07g015670 vs. NCBI nr
Match: EEC84030.1 (hypothetical protein OsI_30257 [Oryza sativa Indica Group])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 2   IMVSKNITTEEAERLIKENEGWDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPK 61
           I   +N        LI  +  WD   I  HF+P+DVE IL+I L +R     I W+ D  
Sbjct: 85  ISAKRNCRLRWVSDLIDRSGSWDTDKISHHFLPMDVEAILNIRLSSRLEEDFIAWHPDRL 144

Query: 62  GVFSVKSAYHLKENKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGATR 113
           G FSV+SAYHL     QV + S S      ++W ++   N   + KI A R
Sbjct: 145 GRFSVRSAYHLAVALAQVDDGSSSSGNGSSRAWNALWKCNAPQKVKIFAWR 195

[Close]

BLAST of Lcy07g015670 vs. NCBI nr
Match: XP_035551723.1 (uncharacterized protein LOC118349891 [Juglans regia])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 23  WDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPKGVFSVKSAYHLKENKLQVKEA 82
           W+E  I   F   + + I+ IPL  R++   +IW    KG+FSVKSAYHL+E++ +V   
Sbjct: 788 WNEGFIKSIFSKEEADMIISIPLSKRDVDDRMIWGPSKKGIFSVKSAYHLEESRSRVSIG 847

Query: 83  SGSDIKAQRKSWRSIRGLNI 103
             S+     K W+SI GLNI
Sbjct: 848 ESSEQNGLGKLWKSIWGLNI 867

[Close]

BLAST of Lcy07g015670 vs. NCBI nr
Match: KAG8387873.1 (hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia])

HSP 1 Score: 67.8 bits (164), Expect = 8.0e-08
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 16  LIKENEG-WDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADPKGVFSVKSAYHLKE 75
           LI  N G WD  LI R F P D   I  IPLG+ N R  +IWN    G F+V+SAYHL +
Sbjct: 121 LINPNTGWWDSDLIDRVFCPEDASIIKTIPLGSNNNRDRLIWNFSSSGFFAVRSAYHLAK 180

Query: 76  NKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGA 111
           +  + + AS S+ K    SW+ I    + P+ ++ A
Sbjct: 181 DIDRRRAASSSNPKPPSLSWQFIWKTRVPPKIRVFA 216

[Close]

BLAST of Lcy07g015670 vs. NCBI nr
Match: KAA0031740.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 1   MIMVSKNITTEEAERLIKENEGWDEALIYRHFIPLDVENILDIPLGNRNLRVEIIWNADP 60
           +++V +++       LI  +  WDE LI  +FI     +I++IPL N   + +I W +DP
Sbjct: 43  LVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDP 102

Query: 61  KGVFSVKSAYHLKENKLQVKEASGSDIKAQRKSWRSIRGLNIIPRAKIGATR 113
           K  F VKS Y +  +     EAS S+ K Q K  ++I     +P+AKI   R
Sbjct: 103 KDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAKIWVWR 154

The following BLAST results are available for this feature:

BLAST of Lcy07g015670 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g015670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B8AFP4	6.0e-09	36.94	Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX...	[more]
A0A2N9GJ35	1.0e-08	41.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1	[more]
A0A2N9FB16	1.0e-08	41.67	CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1220...	[more]
B8B9K5	3.0e-08	36.04	zf-RVT domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_3...	[more]
A0A6P9F758	3.0e-08	41.25	uncharacterized protein LOC118349891 OS=Juglans regia OX=51240 GN=LOC118349891 P...	[more]

BLAST of Lcy07g015670 vs. NCBI nr


Match Name	E-value	Identity	Description
EEC72938.1	1.2e-08	36.94	hypothetical protein OsI_06800 [Oryza sativa Indica Group]	[more]
EEC84030.1	6.1e-08	36.04	hypothetical protein OsI_30257 [Oryza sativa Indica Group]	[more]
XP_035551723.1	6.1e-08	41.25	uncharacterized protein LOC118349891 [Juglans regia]	[more]
KAG8387873.1	8.0e-08	40.63	hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia]	[more]
KAA0031740.1	1.0e-07	33.93	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]

BLAST of Lcy07g015670 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g015670.1	Lcy07g015670.1	mRNA