Lcy07g013330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g013330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Lipid-A-disaccharide synthase
Location	Chr07: 42500802 .. 42502466 (+)
RNA-Seq Expression	Lcy07g013330
Synteny	Lcy07g013330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTGGAAATGCTGCTCGGAGCGACGACGAATGATGCGGGGCCTTCTCAACGACGTGAAAAGGTACTTATCGAACTATAGAGTAGCTGCTAATGCCGTCGAAATGGCTACAAAACACGGCGAATTGAGGGTATTCATTGTGGCCGGAGAAGTCTCCGGCGACACCATCGGCTCTCGTCTCATGACATCTCTGAGGACGCTGTCTCCTGTTCCAGTTCATTTTTCCGGCGTCGGAGGGTAAGCTGTTACTTGTTTGAAGTGTCAGTATCGTCTGTTTGAAGGAATTTCTTTCTGTTTTTCCCATTCTTCGACTTGGGTCACTGATGTTCGCCTTAAAATGCAAAATGTTGGTTTAATTTTGGACTTGTAAGTTGCAATTTTGTTCTTGTGTGCTTACATGCTGAACGTTTATGGTCGAACCAACGAATTGTTTTAATTTCTGCCACTTTGGTCTCTTCTTCTGTGATTTAAGCTGTCTGTTGATATCTATCTCTGCAGCTACTGGTTTTTTTTAACTAATTCCCCGTCAAAATTTCACCCATCTGTTGTTTCAGCCCCATGATGTCCAAACAAGGACTCAAGTCTCTATTCCCCATGGAGGATATTGCAGTAATGGGAATATGGGAGCTATTTCCGCATCTAAAGAAGATCAAAGTGAGTAATTCAAACATAATATATTTGGCGTTTCACTGTTTCTCTTTTTTTGTACAAGAGAGAAAAAAAAGTTTCCCCATAGTCATACATACAACTATTTTACAAGAAACAAGCTTTTAATCAAAGAATGAAAAATACAAAAGTAAAAGGGGAAGTAAGTTGAAAGTTTTTATGAAAAAGCCCCTTTAATCGATGTTCATCAGAAAAAGTTATGCAATAATGAAAAAGCTTGTTGATAGCACACCAAGTAGTTCCCAAGAATTTGATGAGATTCCATAAATCAAACTAAGGTTTCATGAATTATTTTTCATCCCAATCATCTGTTCATGTTAGTAATAATAATGATTACTAATTGATTTGTAAGATTTGTTTTATATGATTGTTGTTTCTTATGTGTCATGAGATTTGTGGATTGCACAATTTTTGGCCTGGATTTTTTTTTTTTTTCCTTTTTTAAATGTGGAGACTTTGGCAATACCAGGAAAAGCTTAAGATGACAGTTGAGGCTGCTGTTGTGTTTCAACCTCACGTCGTTGTCACAGTGGATTCTAAAGGGTTCTCTTTCCGTCTCCTAAAGCAGATACGTGGTAATTTGCTCCAGCATCTTGGAGGCTATTGAGTTTTGTTACTTGCTTATACAATTAGAACCGCATGGGAACAATGAGGTGGTTTTGCAGCTAGATACAGACACCAGAGATTGGATGGTCCAGTACATTTCCATTACGTAGCACCATCATTCTGGGCTTGGAAAGGGGGTGAAAAAAGGCTAAAAGGTCTCACTGAATTTGTTGATCATATTTTATGCATACTTCCAAATGAAGAAGAAGTTTGCAAATCAAATGGATTGGCAGCAACCTTCGTGGGGCATCCCATTCTGGAGGATACATTAGACTTGAATGCAGTAAGATATGTCTTAATCCTGGTTCATGCAGAGTGTATAAATTCATCATCTTTGAACTCAATTCTTGAAAAAGTGGGCTGCATTCATGGTCATTTCTCCTTACTCTAA

mRNA sequence

ATGTACTGGAAATGCTGCTCGGAGCGACGACGAATGATGCGGGGCCTTCTCAACGACGTGAAAAGGTACTTATCGAACTATAGAGTAGCTGCTAATGCCGTCGAAATGGCTACAAAACACGGCGAATTGAGGGTATTCATTGTGGCCGGAGAAGTCTCCGGCGACACCATCGGCTCTCGTCTCATGACATCTCTGAGGACGCTGTCTCCTGTTCCAGTTCATTTTTCCGGCGTCGGAGGCCCCATGATGTCCAAACAAGGACTCAAGTCTCTATTCCCCATGGAGGATATTGCAGTAATGGGAATATGGGAGCTATTTCCGCATCTAAAGAAGATCAAAGAAAAGCTTAAGATGACAGTTGAGGCTGCTGTTGTGTTTCAACCTCACGTCGTTGTCACAGTGGATTCTAAAGGGTTCTCTTTCCGTCTCCTAAAGCAGATACGTGCTAGATACAGACACCAGAGATTGGATGGTCCAGTACATTTCCATTACGTAGCACCATCATTCTGGGCTTGGAAAGGGGGTGAAAAAAGGCTAAAAGGTCTCACTGAATTTGTTGATCATATTTTATGCATACTTCCAAATGAAGAAGAAGTTTGCAAATCAAATGGATTGGCAGCAACCTTCGTGGGGCATCCCATTCTGGAGGATACATTAGACTTGAATGCAGTAAGATATGTCTTAATCCTGGTTCATGCAGAGTGTATAAATTCATCATCTTTGAACTCAATTCTTGAAAAAGTGGGCTGCATTCATGGTCATTTCTCCTTACTCTAA

Coding sequence (CDS)

ATGTACTGGAAATGCTGCTCGGAGCGACGACGAATGATGCGGGGCCTTCTCAACGACGTGAAAAGGTACTTATCGAACTATAGAGTAGCTGCTAATGCCGTCGAAATGGCTACAAAACACGGCGAATTGAGGGTATTCATTGTGGCCGGAGAAGTCTCCGGCGACACCATCGGCTCTCGTCTCATGACATCTCTGAGGACGCTGTCTCCTGTTCCAGTTCATTTTTCCGGCGTCGGAGGCCCCATGATGTCCAAACAAGGACTCAAGTCTCTATTCCCCATGGAGGATATTGCAGTAATGGGAATATGGGAGCTATTTCCGCATCTAAAGAAGATCAAAGAAAAGCTTAAGATGACAGTTGAGGCTGCTGTTGTGTTTCAACCTCACGTCGTTGTCACAGTGGATTCTAAAGGGTTCTCTTTCCGTCTCCTAAAGCAGATACGTGCTAGATACAGACACCAGAGATTGGATGGTCCAGTACATTTCCATTACGTAGCACCATCATTCTGGGCTTGGAAAGGGGGTGAAAAAAGGCTAAAAGGTCTCACTGAATTTGTTGATCATATTTTATGCATACTTCCAAATGAAGAAGAAGTTTGCAAATCAAATGGATTGGCAGCAACCTTCGTGGGGCATCCCATTCTGGAGGATACATTAGACTTGAATGCAGTAAGATATGTCTTAATCCTGGTTCATGCAGAGTGTATAAATTCATCATCTTTGAACTCAATTCTTGAAAAAGTGGGCTGCATTCATGGTCATTTCTCCTTACTCTAA

Protein sequence

MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSRLMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTVEAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLKGLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNAVRYVLILVHAECINSSSLNSILEKVGCIHGHFSLL

Homology

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BLAST of Lcy07g013330 vs. ExPASy Swiss-Prot
Match: F4IF99 (Probable lipid-A-disaccharide synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXB PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-80
Identity = 140/206 (67.96%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 21  KRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSRLMTSLRTLSPVPVHFSGVGG 80
           KRY S+++ A + ++ A   GELRVFIV+GEVSGD IGSRLM+SL+ LSP+P+ F+GVGG
Sbjct: 19  KRY-SSFQAAKSVIDKAAIDGELRVFIVSGEVSGDNIGSRLMSSLKKLSPLPIRFNGVGG 78

Query: 81  PMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTVEAAVVFQPHVVVTVDSKGFS 140
            +M K+GL SLFPMED+AVMG+WEL PHL K + KLK T++AAV F+PHVVVTVDSKGFS
Sbjct: 79  SLMCKKGLNSLFPMEDLAVMGVWELLPHLYKFRVKLKETIDAAVKFKPHVVVTVDSKGFS 138

Query: 141 FRLLKQIRARYRHQRLDG-PVHFHYVAPSFWAWKGGEKRLKGLTEFVDHILCILPNEEEV 200
           FRLLK++RARY+ QRL+   VHFHYVAPSFWAWKGGE RL GL+EFVDH+ CILPNEE V
Sbjct: 139 FRLLKELRARYKQQRLENCSVHFHYVAPSFWAWKGGESRLGGLSEFVDHLFCILPNEERV 198

Query: 201 CKSNGLAATFVGHPILEDTLDLNAVR 226
           C+ +G+ ATFVGHP+LED  + + VR
Sbjct: 199 CREHGVEATFVGHPVLEDASEFDLVR 223

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BLAST of Lcy07g013330 vs. ExPASy Swiss-Prot
Match: B6IST7 (Lipid-A-disaccharide synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=lpxB PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-37
Identity = 77/178 (43.26%), Postives = 113/178 (63.48%), Query Frame = 0


Query: 43  LRVFIVAGEVSGDTIGSRLMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGI 102
           L +F++AGE SGD +G RLM +LR      V F+GVGGP M++QGL+SLFPMED+A+ G+
Sbjct: 4   LLIFLIAGEPSGDVLGGRLMAALREAMEGHVEFAGVGGPRMAEQGLQSLFPMEDLALFGL 63

Query: 103 WELFPHLKKIKEKLKMTVEAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHF 162
            EL P L  + ++L  T +A +   P  VV++D+  F FR+ +++R       L      
Sbjct: 64  AELLPRLPTLLKRLDQTTKAVLERTPDAVVSIDAPDFCFRVEQRLRRAGARMPL-----I 123

Query: 163 HYVAPSFWAWKGGEKRLKGLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLD 221
           HYVAP+ WAW+ G  R + + +F+DH+L +LP E    ++ GL  TFVGHP++E   D
Sbjct: 124 HYVAPTVWAWRPG--RARKVAKFLDHLLALLPFEPPYFEAVGLPCTFVGHPVVESGAD 174

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BLAST of Lcy07g013330 vs. ExPASy Swiss-Prot
Match: Q0BS63 (Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=lpxB PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.2e-35
Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 0


Query: 45  VFIVAGEVSGDTIGSRLMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWE 104
           ++IVAGE SGD +G+RL+ +LR ++P  + F+G+GGP M + G +SLFPM ++AVMG+ E
Sbjct: 6   IYIVAGEHSGDVLGARLIHALRAINP-SIRFAGIGGPRMEECGFQSLFPMHELAVMGLIE 65

Query: 105 LFPHLKKIKEKLKMTVEAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHY 164
           + P + K++ +L+ TV+     +P +V+T+DS GF  RLL+ I+         G    HY
Sbjct: 66  ILPRVLKLRRRLQQTVQDIETRRPDLVLTIDSPGFCLRLLRAIQP-------FGIKRVHY 125

Query: 165 VAPSFWAWKGGEKRLKGLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLD 221
           VAP  WAW+  E R+K      + +LC+LP EE+      +   FVGHP+LE   D
Sbjct: 126 VAPQVWAWR--EHRVKRFPGLWERMLCLLPFEEKWFAERNVPGQFVGHPVLESGAD 171

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BLAST of Lcy07g013330 vs. ExPASy Swiss-Prot
Match: Q5FUA3 (Lipid-A-disaccharide synthase OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=lpxB PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.0e-34
Identity = 82/203 (40.39%), Postives = 121/203 (59.61%), Query Frame = 0


Query: 17  LNDVKRYLSNYRVAANAVEMAT---KHGELRVFIVAGEVSGDTIGSRLMTSLRTLSPVPV 76
           +N +    S+ + +A+  + AT   ++G + ++I+AGE SGD IG+RLM +L    P  V
Sbjct: 1   MNSLPESGSDGQSSADPSQKATSLPRYGRV-IWILAGEASGDVIGARLMQALHAQDPSLV 60

Query: 77  HFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTVEAAVVFQPHVVVT 136
            F+GVGG  M   GL SLFPM D+AVMG+ E+ P L+++ ++L   V+   + +P +VVT
Sbjct: 61  -FAGVGGGRMEALGLHSLFPMSDLAVMGLVEVVPRLRQLSQRLLEAVQDIELRKPDLVVT 120

Query: 137 VDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLKGLTEFVDHILCIL 196
           +DS GF+ RLL++I          G    HYVAP  WAW+  E R+K      D +LC+L
Sbjct: 121 IDSPGFTLRLLQKIER-------SGIKRVHYVAPQVWAWR--ENRVKEFPGLWDRLLCLL 180

Query: 197 PNEEEVCKSNGLAATFVGHPILE 217
           P E +     GL   FVGHP+L+
Sbjct: 181 PFEPDWFAQRGLEGRFVGHPVLQ 192

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BLAST of Lcy07g013330 vs. ExPASy Swiss-Prot
Match: Q5LSU1 (Lipid-A-disaccharide synthase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=lpxB PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-33
Identity = 73/188 (38.83%), Postives = 110/188 (58.51%), Query Frame = 0


Query: 31  ANAVEMATKHGEL-RVFIVAGEVSGDTIGSRLMTSLRTLSPVPVHFSGVGGPMMSKQGLK 90
           A  V +  + G L RVFI+AGE SGD +G  LM  LR L P  V F GVGGP M  +GL 
Sbjct: 4   AGPVPVCCRAGRLMRVFILAGEPSGDRLGGALMAGLRQLCP-DVQFDGVGGPAMESEGLS 63

Query: 91  SLFPMEDIAVMGIWELFPHLKKIKEKLKMTVEAAVVFQPHVVVTVDSKGFSFRLLKQIRA 150
           S FPM ++++MG+ E+ P    +K ++  T +A +  +P V++T+DS  FS R+ + ++ 
Sbjct: 64  SRFPMAELSIMGLVEVLPKYFHLKRRIAETAQAVLAMRPDVMITIDSPDFSLRVARLVKD 123

Query: 151 RYRHQRLDGPVHFHYVAPSFWAWKGGEKRLKGLTEFVDHILCILPNEEEVCKSNGLAATF 210
               + +      HYVAPS WAW+ G  R   + + +DH+L +LP E    +  G+   F
Sbjct: 124 ASDIRTV------HYVAPSVWAWRPG--RADKMAKVIDHVLALLPFEPPYMERAGMECDF 182

Query: 211 VGHPILED 218
           VGHP++ +
Sbjct: 184 VGHPVVTE 182

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BLAST of Lcy07g013330 vs. ExPASy TrEMBL
Match: A0A6J1D8V2 (Lipid-A-disaccharide synthase OS=Momordica charantia OX=3673 GN=LOC111018109 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 4.4e-112
Identity = 199/222 (89.64%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           MY K CSER R+MR  LND+KRY SN R+AANAVEMA KHGELRVFIVAGEVSGDTIGSR
Sbjct: 4   MYGKLCSERWRVMRSFLNDMKRYASNSRIAANAVEMAAKHGELRVFIVAGEVSGDTIGSR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LMTSLRTLSPVPV FSGVGGPMMSK+GLKSLFPMEDIAVMGIWELFPHLKKI+E LKMTV
Sbjct: 64  LMTSLRTLSPVPVRFSGVGGPMMSKKGLKSLFPMEDIAVMGIWELFPHLKKIRENLKMTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA++FQPHVVVTVDSKGFSFRLLKQIRARYRH++LDGPVHFHYVAPSFWAWKGGEKRLK
Sbjct: 124 EAAIMFQPHVVVTVDSKGFSFRLLKQIRARYRHEKLDGPVHFHYVAPSFWAWKGGEKRLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLN 223
           GL E VDHILCILPNE+EVCKSNGLAATFVGHPILEDTL LN
Sbjct: 184 GLIELVDHILCILPNEDEVCKSNGLAATFVGHPILEDTLQLN 225

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BLAST of Lcy07g013330 vs. ExPASy TrEMBL
Match: A0A6J1FY39 (Lipid-A-disaccharide synthase OS=Cucurbita moschata OX=3662 GN=LOC111448939 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.7e-111
Identity = 198/223 (88.79%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           MYWKCCSERRRMMRG L+++ RYLS YRVAANA EM+  HGELRVFIVAGEVSGDTI SR
Sbjct: 4   MYWKCCSERRRMMRGFLSNMNRYLSTYRVAANAFEMSANHGELRVFIVAGEVSGDTIASR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LMTSLRTLSPVPV FSGVGG MMSKQGLKSLFPMEDIAVMGIWELFPHL KI+EKLK TV
Sbjct: 64  LMTSLRTLSPVPVRFSGVGGSMMSKQGLKSLFPMEDIAVMGIWELFPHLMKIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VFQPHVVVTVDSKGFSFRLLKQIRARYR+ +L  PVHFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFQPHVVVTVDSKGFSFRLLKQIRARYRNDKLACPVHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNA 224
           GL EFVDHILCILPNE EVCKSNGLAATFVGHPILEDTLDLNA
Sbjct: 184 GLVEFVDHILCILPNEAEVCKSNGLAATFVGHPILEDTLDLNA 226

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BLAST of Lcy07g013330 vs. ExPASy TrEMBL
Match: A0A6J1JCQ5 (Lipid-A-disaccharide synthase OS=Cucurbita maxima OX=3661 GN=LOC111483845 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.8e-110
Identity = 198/223 (88.79%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           MYWK CSERRRMMRG LN++ RYLS YRVAANA EM+ KHGELRVFIVAGEVSGDTI SR
Sbjct: 4   MYWKGCSERRRMMRGFLNNMNRYLSTYRVAANAFEMSAKHGELRVFIVAGEVSGDTIASR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LMTSLRTLSPVPV FSGVGG MMSKQGLKSLFPMEDIAVMGIWELFPHL KI+EKLK TV
Sbjct: 64  LMTSLRTLSPVPVRFSGVGGSMMSKQGLKSLFPMEDIAVMGIWELFPHLMKIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VFQPHVVVTVDSKGFSFRLLKQIRARYR+ +L  PVHFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFQPHVVVTVDSKGFSFRLLKQIRARYRNDKLACPVHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNA 224
           GL EFVDHILCILPNE EVCKSNGLAATFVGHPILEDTL+LNA
Sbjct: 184 GLVEFVDHILCILPNEAEVCKSNGLAATFVGHPILEDTLELNA 226

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BLAST of Lcy07g013330 vs. ExPASy TrEMBL
Match: A0A1S3C378 (Lipid-A-disaccharide synthase OS=Cucumis melo OX=3656 GN=LOC103496344 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.9e-109
Identity = 192/225 (85.33%), Postives = 207/225 (92.00%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           M WKCC +R+R+M+ LLN+ KRYLSNYRVAANA EM+ KHGELRVFIVAGEVSGDTI SR
Sbjct: 4   MNWKCCLQRQRVMQSLLNNTKRYLSNYRVAANAFEMSAKHGELRVFIVAGEVSGDTIASR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LM SLRTLSPVPV+FSGVGGPMMSKQGLKSLF MEDIAVMGIWELF HLK I+EKLK TV
Sbjct: 64  LMASLRTLSPVPVNFSGVGGPMMSKQGLKSLFLMEDIAVMGIWELFSHLKSIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VF+PHV+VTVDSKGFSFRLLKQIRARYR  ++DGP+HFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFEPHVIVTVDSKGFSFRLLKQIRARYRRHKMDGPLHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNAVR 226
           GL EFVDHILCILPNEEEVCKSN LAATFVGHPILED LDLN VR
Sbjct: 184 GLVEFVDHILCILPNEEEVCKSNRLAATFVGHPILEDALDLNVVR 228

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BLAST of Lcy07g013330 vs. ExPASy TrEMBL
Match: A0A5D3CRH5 (Lipid-A-disaccharide synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00160 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.5e-108
Identity = 190/222 (85.59%), Postives = 205/222 (92.34%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           M WKCC +R+R+M+ LLN+ KRYLSNYRVAANA EM+ KHGELRVFIVAGEVSGDTI SR
Sbjct: 4   MNWKCCLQRQRVMQSLLNNTKRYLSNYRVAANAFEMSAKHGELRVFIVAGEVSGDTIASR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LM SLRTLSPVPV+FSGVGGPMMSKQGLKSLF MEDIAVMGIWELF HLK I+EKLK TV
Sbjct: 64  LMASLRTLSPVPVNFSGVGGPMMSKQGLKSLFLMEDIAVMGIWELFSHLKSIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VF+PHV+VTVDSKGFSFRLLKQIRARYR  ++DGP+HFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFEPHVIVTVDSKGFSFRLLKQIRARYRRHKMDGPLHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLN 223
           GL EFVDHILCILPNEEEVCKSN LAATFVGHPILED LDLN
Sbjct: 184 GLVEFVDHILCILPNEEEVCKSNRLAATFVGHPILEDALDLN 225

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BLAST of Lcy07g013330 vs. NCBI nr
Match: XP_038900510.1 (probable lipid-A-disaccharide synthase, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 425.2 bits (1092), Expect = 3.9e-115
Identity = 200/226 (88.50%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           +YWKCC ERR +M+GLLN+ KRYLSNY+VAANA EMA KHGELRVFIVAGEVSGDTIGSR
Sbjct: 4   IYWKCCLERRPVMQGLLNNTKRYLSNYQVAANAFEMAAKHGELRVFIVAGEVSGDTIGSR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LM+SLRTLSPVPVHFSG+GGPMMSKQGL+SLFPMEDIAVMGIWELFPHL++I+EKLK TV
Sbjct: 64  LMSSLRTLSPVPVHFSGIGGPMMSKQGLESLFPMEDIAVMGIWELFPHLRRIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VFQPHVVVTVDSKGFSFRLLKQIRARYR ++LDGP+HFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFQPHVVVTVDSKGFSFRLLKQIRARYRCRKLDGPLHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNAVRY 227
           GL EFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTL+LN VRY
Sbjct: 184 GLVEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLELNVVRY 229

[Close]

BLAST of Lcy07g013330 vs. NCBI nr
Match: XP_038900509.1 (probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 418.7 bits (1075), Expect = 3.7e-113
Identity = 197/222 (88.74%), Postives = 214/222 (96.40%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           +YWKCC ERR +M+GLLN+ KRYLSNY+VAANA EMA KHGELRVFIVAGEVSGDTIGSR
Sbjct: 4   IYWKCCLERRPVMQGLLNNTKRYLSNYQVAANAFEMAAKHGELRVFIVAGEVSGDTIGSR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LM+SLRTLSPVPVHFSG+GGPMMSKQGL+SLFPMEDIAVMGIWELFPHL++I+EKLK TV
Sbjct: 64  LMSSLRTLSPVPVHFSGIGGPMMSKQGLESLFPMEDIAVMGIWELFPHLRRIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VFQPHVVVTVDSKGFSFRLLKQIRARYR ++LDGP+HFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFQPHVVVTVDSKGFSFRLLKQIRARYRCRKLDGPLHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLN 223
           GL EFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTL+LN
Sbjct: 184 GLVEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLELN 225

[Close]

BLAST of Lcy07g013330 vs. NCBI nr
Match: KAG6570556.1 (putative lipid-A-disaccharide synthase, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414.8 bits (1065), Expect = 5.3e-112
Identity = 200/223 (89.69%), Postives = 208/223 (93.27%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           MYWKCCSERRRMMRG LN++ RYLS YRVAANA EM+ KHGELRVFIVAGEVSGDTI SR
Sbjct: 4   MYWKCCSERRRMMRGFLNNMNRYLSTYRVAANAFEMSAKHGELRVFIVAGEVSGDTIASR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LMTSLRTLSPVPV FSGVGG MMSKQGLKSLFPMEDIAVMGIWELFPHL KI+EKLK TV
Sbjct: 64  LMTSLRTLSPVPVRFSGVGGSMMSKQGLKSLFPMEDIAVMGIWELFPHLMKIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VFQPHVVVTVDSKGFSFRLLKQIRARYR+ +L  PVHFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFQPHVVVTVDSKGFSFRLLKQIRARYRNDKLACPVHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNA 224
           GL EFVDHILCILPNE EVCKSNGLAATFVGHPILEDTLDLNA
Sbjct: 184 GLVEFVDHILCILPNEAEVCKSNGLAATFVGHPILEDTLDLNA 226

[Close]

BLAST of Lcy07g013330 vs. NCBI nr
Match: XP_022149752.1 (probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 414.1 bits (1063), Expect = 9.0e-112
Identity = 199/222 (89.64%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           MY K CSER R+MR  LND+KRY SN R+AANAVEMA KHGELRVFIVAGEVSGDTIGSR
Sbjct: 4   MYGKLCSERWRVMRSFLNDMKRYASNSRIAANAVEMAAKHGELRVFIVAGEVSGDTIGSR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LMTSLRTLSPVPV FSGVGGPMMSK+GLKSLFPMEDIAVMGIWELFPHLKKI+E LKMTV
Sbjct: 64  LMTSLRTLSPVPVRFSGVGGPMMSKKGLKSLFPMEDIAVMGIWELFPHLKKIRENLKMTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA++FQPHVVVTVDSKGFSFRLLKQIRARYRH++LDGPVHFHYVAPSFWAWKGGEKRLK
Sbjct: 124 EAAIMFQPHVVVTVDSKGFSFRLLKQIRARYRHEKLDGPVHFHYVAPSFWAWKGGEKRLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLN 223
           GL E VDHILCILPNE+EVCKSNGLAATFVGHPILEDTL LN
Sbjct: 184 GLIELVDHILCILPNEDEVCKSNGLAATFVGHPILEDTLQLN 225

[Close]

BLAST of Lcy07g013330 vs. NCBI nr
Match: XP_023512770.1 (probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.8 bits (1057), Expect = 4.5e-111
Identity = 199/223 (89.24%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MYWKCCSERRRMMRGLLNDVKRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSR 60
           MYWKCCSERRRMMRG LN++ RYLS YRVAANA EM+ KHGELRVFIVAGEVSGDTI SR
Sbjct: 4   MYWKCCSERRRMMRGFLNNMNRYLSTYRVAANAFEMSAKHGELRVFIVAGEVSGDTIASR 63

Query: 61  LMTSLRTLSPVPVHFSGVGGPMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTV 120
           LMTSLRTLSPVPV FSGVGG MMSKQGLKSLFPMEDIAVMGIWEL PHL KI+EKLK TV
Sbjct: 64  LMTSLRTLSPVPVRFSGVGGSMMSKQGLKSLFPMEDIAVMGIWELCPHLMKIREKLKRTV 123

Query: 121 EAAVVFQPHVVVTVDSKGFSFRLLKQIRARYRHQRLDGPVHFHYVAPSFWAWKGGEKRLK 180
           EAA+VFQPHVVVTVDSKGFSFRLLKQIRARYR+ +L  PVHFHYVAPSFWAWKGGE+RLK
Sbjct: 124 EAAIVFQPHVVVTVDSKGFSFRLLKQIRARYRNDKLACPVHFHYVAPSFWAWKGGEERLK 183

Query: 181 GLTEFVDHILCILPNEEEVCKSNGLAATFVGHPILEDTLDLNA 224
           GL EFVDHILCILPNE EVCKSNGLAATFVGHPILEDTLDLNA
Sbjct: 184 GLVEFVDHILCILPNEAEVCKSNGLAATFVGHPILEDTLDLNA 226

[Close]

BLAST of Lcy07g013330 vs. TAIR 10
Match: AT2G04560.1 (transferases, transferring glycosyl groups )

HSP 1 Score: 300.4 bits (768), Expect = 1.4e-81
Identity = 140/206 (67.96%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 21  KRYLSNYRVAANAVEMATKHGELRVFIVAGEVSGDTIGSRLMTSLRTLSPVPVHFSGVGG 80
           KRY S+++ A + ++ A   GELRVFIV+GEVSGD IGSRLM+SL+ LSP+P+ F+GVGG
Sbjct: 19  KRY-SSFQAAKSVIDKAAIDGELRVFIVSGEVSGDNIGSRLMSSLKKLSPLPIRFNGVGG 78

Query: 81  PMMSKQGLKSLFPMEDIAVMGIWELFPHLKKIKEKLKMTVEAAVVFQPHVVVTVDSKGFS 140
            +M K+GL SLFPMED+AVMG+WEL PHL K + KLK T++AAV F+PHVVVTVDSKGFS
Sbjct: 79  SLMCKKGLNSLFPMEDLAVMGVWELLPHLYKFRVKLKETIDAAVKFKPHVVVTVDSKGFS 138

Query: 141 FRLLKQIRARYRHQRLDG-PVHFHYVAPSFWAWKGGEKRLKGLTEFVDHILCILPNEEEV 200
           FRLLK++RARY+ QRL+   VHFHYVAPSFWAWKGGE RL GL+EFVDH+ CILPNEE V
Sbjct: 139 FRLLKELRARYKQQRLENCSVHFHYVAPSFWAWKGGESRLGGLSEFVDHLFCILPNEERV 198

Query: 201 CKSNGLAATFVGHPILEDTLDLNAVR 226
           C+ +G+ ATFVGHP+LED  + + VR
Sbjct: 199 CREHGVEATFVGHPVLEDASEFDLVR 223

The following BLAST results are available for this feature:

BLAST of Lcy07g013330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IF99	1.9e-80	67.96	Probable lipid-A-disaccharide synthase, mitochondrial OS=Arabidopsis thaliana OX...	[more]
B6IST7	3.4e-37	43.26	Lipid-A-disaccharide synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW...	[more]
Q0BS63	9.2e-35	41.48	Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis (strain ATCC BAA-126...	[more]
Q5FUA3	6.0e-34	40.39	Lipid-A-disaccharide synthase OS=Gluconobacter oxydans (strain 621H) OX=290633 G...	[more]
Q5LSU1	3.0e-33	38.83	Lipid-A-disaccharide synthase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 151...	[more]

BLAST of Lcy07g013330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8V2	4.4e-112	89.64	Lipid-A-disaccharide synthase OS=Momordica charantia OX=3673 GN=LOC111018109 PE=...	[more]
A0A6J1FY39	3.7e-111	88.79	Lipid-A-disaccharide synthase OS=Cucurbita moschata OX=3662 GN=LOC111448939 PE=4...	[more]
A0A6J1JCQ5	1.8e-110	88.79	Lipid-A-disaccharide synthase OS=Cucurbita maxima OX=3661 GN=LOC111483845 PE=4 S...	[more]
A0A1S3C378	5.9e-109	85.33	Lipid-A-disaccharide synthase OS=Cucumis melo OX=3656 GN=LOC103496344 PE=4 SV=1	[more]
A0A5D3CRH5	8.5e-108	85.59	Lipid-A-disaccharide synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Lcy07g013330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900510.1	3.9e-115	88.50	probable lipid-A-disaccharide synthase, mitochondrial isoform X2 [Benincasa hisp...	[more]
XP_038900509.1	3.7e-113	88.74	probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Benincasa hisp...	[more]
KAG6570556.1	5.3e-112	89.69	putative lipid-A-disaccharide synthase, mitochondrial, partial [Cucurbita argyro...	[more]
XP_022149752.1	9.0e-112	89.64	probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Momordica char...	[more]
XP_023512770.1	4.5e-111	89.24	probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Cucurbita pepo...	[more]

BLAST of Lcy07g013330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04560.1	1.4e-81	67.96	transferases, transferring glycosyl groups	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003835	Glycosyl transferase, family 19	PFAM	PF02684	LpxB	coord: 45..217 e-value: 9.1E-43 score: 146.5
IPR003835	Glycosyl transferase, family 19	PANTHER	PTHR30372	LIPID-A-DISACCHARIDE SYNTHASE	coord: 32..223
None	No IPR available	PANTHER	PTHR30372:SF4	LIPID-A-DISACCHARIDE SYNTHASE, MITOCHONDRIAL-RELATED	coord: 32..223
None	No IPR available	SUPERFAMILY	53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 44..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g013330.1	Lcy07g013330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009245	lipid A biosynthetic process
molecular_function	GO:0008915	lipid-A-disaccharide synthase activity
molecular_function	GO:0005543	phospholipid binding