Lcy07g012120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g012120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr07: 41307195 .. 41308047 (+)
RNA-Seq Expression	Lcy07g012120
Synteny	Lcy07g012120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGATCCACAAATTCTTTCTAGTCTGTGGCGTGCAACGGTCCCGAAGAAGTGCAGATTTTTTATGTGGACAGTGCTTCACCGTAGGCTTCACACGGCAGATCGTTTGCAAAGAATTTTTAAACATTCTGTCTTAAGCCCAAGTATTTGCTCTCTCTGTCATGCTAACTCAGAATCTTTGGATCATCTTTTTGCTCTTTGTCTGTTGGTCTCTGGCATATGGATTCAGATATTTCAAGCTTCGGGTGCTCGCTCTTCCATCCCTTCTCAAGCTCATAAGCTCTGTGAGGAGGCTTTTTCTTTCAAGATTCGCTCTCAAAGGGGTATGCTTTTCCAAGCTTTCATTGTGGCTACCTTTTGGGTCATTTGGAATGAGCAAAATAGTCGGATTTTCAAAAACCTTTCTCGCTCATCCTATCAGATTTGGGAGGATATTATTGCCTTTACGGCTTTTTTGGGCGTCTTCCTCAAAGTTCTTTATCAACTATGATGCGCTTTCCATTGCTCTGAATTGGTTGGCTTTTATGTAATCCTCCCCATGTATGTGTCTCACATACGTTCTAATAAAGTATCTTTTTTTTTAAAAAAAAACCATGATCATCCCCTTGTCTAGTCAACGTGGGACTTTGGTTGCACTCTCTAATTTCCAACATTTTCAAAGGTTGATCTTCTAAGAACCGCTTCTTCTCCACAAAGGGAGAGACCCAATGGTGCCAATCTGTGGCTTGCTTTGTTGCCATAATTTAGAAGTCACTATGATCGAGAAGGAACCCATTGCACTTGTGCACACCATGGTCTTTGATAATCTAGAGATGAATTTTCTGATTTGCGCTTCTCGAAATGTAAATGCGTAG

mRNA sequence

GTGGATCCACAAATTCTTTCTAGTCTGTGGCGTGCAACGGTCCCGAAGAAGTGCAGATTTTTTATGTGGACAGTGCTTCACCGTAGGCTTCACACGGCAGATCGTTTGCAAAGAATTTTTAAACATTCTGTCTTAAGCCCAAGTATTTGCTCTCTCTGTCATGCTAACTCAGAATCTTTGGATCATCTTTTTGCTCTTTGTCTGTTGGTCTCTGGCATATGGATTCAGATATTTCAAGCTTCGGGTGCTCGCTCTTCCATCCCTTCTCAAGCTCATAAGCTCTGTGAGGAGGCTTTTTCTTTCAAGATTCGCTCTCAAAGGGAAGTCACTATGATCGAGAAGGAACCCATTGCACTTGTGCACACCATGGTCTTTGATAATCTAGAGATGAATTTTCTGATTTGCGCTTCTCGAAATGTAAATGCGTAG

Coding sequence (CDS)

GTGGATCCACAAATTCTTTCTAGTCTGTGGCGTGCAACGGTCCCGAAGAAGTGCAGATTTTTTATGTGGACAGTGCTTCACCGTAGGCTTCACACGGCAGATCGTTTGCAAAGAATTTTTAAACATTCTGTCTTAAGCCCAAGTATTTGCTCTCTCTGTCATGCTAACTCAGAATCTTTGGATCATCTTTTTGCTCTTTGTCTGTTGGTCTCTGGCATATGGATTCAGATATTTCAAGCTTCGGGTGCTCGCTCTTCCATCCCTTCTCAAGCTCATAAGCTCTGTGAGGAGGCTTTTTCTTTCAAGATTCGCTCTCAAAGGGAAGTCACTATGATCGAGAAGGAACCCATTGCACTTGTGCACACCATGGTCTTTGATAATCTAGAGATGAATTTTCTGATTTGCGCTTCTCGAAATGTAAATGCGTAG

Protein sequence

VDPQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDHLFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQREVTMIEKEPIALVHTMVFDNLEMNFLICASRNVNA

Homology

[Close]

BLAST of Lcy07g012120 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 865 PSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINH 924

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQR 108
           LF  C     +W +  QA    +S P+    L +   S  I++Q+
Sbjct: 925 LFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQK 968

[Close]

BLAST of Lcy07g012120 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 771 PSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINH 830

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQR 108
           LF  C     +W +  QA    +S P+    L +   S  I++Q+
Sbjct: 831 LFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQK 874

[Close]

BLAST of Lcy07g012120 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 3    PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
            P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 973  PNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINH 1032

Query: 63   LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQR 108
            LF  C     +W +  +A    +S P+    L +   S  IR+Q+
Sbjct: 1033 LFIHCPYSQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQK 1076

[Close]

BLAST of Lcy07g012120 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 316 PNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINH 375

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQREVTMIEKEPIAL 120
           LF  C     +W +  +A    +  P+    L +   S  IR+Q+ +       I L
Sbjct: 376 LFIHCPYSQQLWSKA-KALLKWNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILL 431

[Close]

BLAST of Lcy07g012120 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 273 PNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINH 332

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQREVTMIEKEPIAL 120
           LF  C     +W +  +A    +  P+    L +   S  IR+Q+ +       I L
Sbjct: 333 LFIHCPYSQQLWSKA-KALLKWNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILL 388

[Close]

BLAST of Lcy07g012120 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 771 PSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINH 830

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQR 108
           LF  C     +W +  QA    +S P+    L +   S  I++Q+
Sbjct: 831 LFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQK 874

[Close]

BLAST of Lcy07g012120 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 865 PSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINH 924

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQR 108
           LF  C     +W +  QA    +S P+    L +   S  I++Q+
Sbjct: 925 LFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQK 968

[Close]

BLAST of Lcy07g012120 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 3    PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
            P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 973  PNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINH 1032

Query: 63   LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQR 108
            LF  C     +W +  +A    +S P+    L +   S  IR+Q+
Sbjct: 1033 LFIHCPYSQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQK 1076

[Close]

BLAST of Lcy07g012120 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-11
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 316 PNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINH 375

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQREVTMIEKEPIAL 120
           LF  C     +W +  +A    +  P+    L +   S  IR+Q+ +       I L
Sbjct: 376 LFIHCPYSQQLWSKA-KALLKWNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILL 431

[Close]

BLAST of Lcy07g012120 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-11
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 3   PQILSSLWRATVPKKCRFFMWTVLHRRLHTADRLQRIFKHSVLSPSICSLCHANSESLDH 62
           P +  +LW+   PKKC+FF+WT++H  ++TADRLQ+   +  LSP+ C +C+ + E ++H
Sbjct: 273 PNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINH 332

Query: 63  LFALCLLVSGIWIQIFQASGARSSIPSQAHKLCEEAFSFKIRSQREVTMIEKEPIAL 120
           LF  C     +W +  +A    +  P+    L +   S  IR+Q+ +       I L
Sbjct: 333 LFIHCPYSQQLWSKA-KALLKWNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILL 388

The following BLAST results are available for this feature:

BLAST of Lcy07g012120 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g012120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	3.7e-12	35.24	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	3.7e-12	35.24	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	6.3e-12	35.24	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	1.4e-11	32.48	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	1.4e-11	32.48	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy07g012120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	7.6e-12	35.24	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	7.6e-12	35.24	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	1.3e-11	35.24	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0044451.1	2.9e-11	32.48	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	2.9e-11	32.48	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy07g012120 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 6..74 e-value: 4.7E-15 score: 56.0
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 6..96
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 6..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g012120.1	Lcy07g012120.1	mRNA