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Lcy07g011810 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCGTTCTCTCCTTCGTCTCTGTTCCTTTGATCACTCTCAATTTCTTTCTCTGCACGTCTCGCCTAATTCTGGAAAACCACCATGAGAGCTCTGAGAAACAACGTCATCGCTCACAAGAAGCCTAACGCAGAGTAATCTTCATTCTTCACACTGATTTTGATTTTCTTGTTTCCATTTTTCTCTTGAATTAGTTTTGATAACATTCTTTGTTTCGATCTTCGATAAAAGTTCCTAATCTTCTCCTGTACGCTTCGTTTCTTTGCTTCTGTAATTTCTCTTCAATTGCCTATGCTATACTCTTTCTCTCTGTACATTTGTGTTCTTATGCTTTCTAGGTAATGTATGTCCATTTTTCTTTCTACTTCGTTTTGTAGTATTTCGCCTCTTTGTTCATTTATAGTTGAGTTGAATTTCACAGTATGCTTTGTCTGCTTTAGATTTATTAGTTTTATGTTTTCCTACACAAGGTTTCTTTCTTCACTTTTTTGAACCTCAACTATTCAACTGATATTATTTCTTTATTCTGCTCGCAATCGTTGTTTCCGAATTAAATCAAGTAACTATTTCTCTTCTGTTTTGCCTACGTTTTGGCTGTGCCGCTCATTTGACTCTGCTCAAGTTTTTATCCAATTTGCACATCCTGATATGTGATTTTGTCATTGATCCGCTTTTCGAAGGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCACGAAAAGCAATAGAGCCATGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAACCTTCTTCATTTTCATGTGAGTATAATCTAACTCTATTGCTCTGTCAAGTCTGCTTCATTTTGAATCCTTCCTTTACACTCTAGCTTGCATTATATTATTCGTTCTGATCTCGATTTCTTGTTTTGGCAAATGATAGGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGTAAAAGCTGGTCCAGCTGTGAGATTTAGTACTCTTGCTTTAATCAGTATTCCTTTCTTTTTATTCCTCCACTTCTATTTAAGTTCGACCAAGTGGAGGCTCAGAAGACTTCTCGAGTTAGCTATATTTGTCATTTGTGGTTCCCTGTGTTTTGTTATTTTGCAGGTTGGCAAAGCTGGCGGCGAAAAATGGAAATCATTGTCTGATGCTGTAAGATTATGATATCTTATTTTCATACTATTTCAATAGAAAACCAGTTCGAGAGTAAACAATTATTAGTGAATAATCCTAGGAATAAATGATTAAGCAATAGGATTGGAGGTTAATTGTTCTACATTATCTGAAGATCGTTCATGTTTTGCACTCTGTATTCACTTCGCTACTTGATCAGAAATATTGACGATACAAATCTGTGGTACTTGTTTTTCTTCCTCAGGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAAAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAGAACCTCGTAACTCTTTTCTATTCTCCTCTCCTTTCATTCCTTCGGCTTCACCTTGTCTGAACATCACCACGCTTCCATATATCATCTATTGTCCCTCTCTCTCTTTTCTCTAAGATCTCCTGGTTTTCAGAATTGCTGTGCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCACAGAAATCATCCTCTGAGGTCCATGATGAAGCAGGGCAAGAAGCTAGCTCTAGCTCTTAGGTATATTCTTTTCCTATCTAAAGATGCCATATACCAAATCATGCATTCTATAGCACAACTGTGTGCCATATCATCTTCTATCGGTTCTTATAGATGTTGATTTTATCTTATCGCGAATGCCAGCTGATACTGGGTTTCCTATATCATCTGCCAAGATTTGCAGGAGTTCGGTGTCCCTTTGAGGTGACAGTATTTCATATTTTTTTAAATAAAAGTTGCATGGTTATGGACGTGAGCTAGCAAGCAAAGTGCAGGGAGTCGAGATGAAGCTAGAACTTGCACAACTGATCTTAACAATTTTAGGACAAAGTTAGTAATTTCTTTCGAAACATATGTATATTCTACGTACTTCTGCTCTGGTAGTGAACTGAATGTCTCATTTCTCTTGAGATTATTATCTGGTTAACAGGGGTTTGTGTTGATTTCCGATTAAAATTTCGTATGGACATTCCGGAAGATTGACGTAAATTGAGTTTGAAAAAGAATTTAGAAAATACTGGGATTTGAAACTTGATAAAAAGAAA GCCGTTCTCTCCTTCGTCTCTGTTCCTTTGATCACTCTCAATTTCTTTCTCTGCACGTCTCGCCTAATTCTGGAAAACCACCATGAGAGCTCTGAGAAACAACGTCATCGCTCACAAGAAGCCTAACGCAGAGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCACGAAAAGCAATAGAGCCATGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAACCTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGTAAAAGCTGGTCCAGCTGTTGGCAAAGCTGGCGGCGAAAAATGGAAATCATTGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAAAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAGAACCTCAATTGCTGTGCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCACAGAAATCATCCTCTGAGGTCCATGATGAAGCAGGGCAAGAAGCTAGCTCTAGCTCTTAGCTGATACTGGGTTTCCTATATCATCTGCCAAGATTTGCAGGAGTTCGGTGTCCCTTTGAGGTGACAGTATTTCATATTTTTTTAAATAAAAGTTGCATGGTTATGGACGTGAGCTAGCAAGCAAAGTGCAGGGAGTCGAGATGAAGCTAGAACTTGCACAACTGATCTTAACAATTTTAGGACAAAGTTAGTAATTTCTTTCGAAACATATGTATATTCTACGTACTTCTGCTCTGGTAGTGAACTGAATGTCTCATTTCTCTTGAGATTATTATCTGGTTAACAGGGGTTTGTGTTGATTTCCGATTAAAATTTCGTATGGACATTCCGGAAGATTGACGTAAATTGAGTTTGAAAAAGAATTTAGAAAATACTGGGATTTGAAACTTGATAAAAAGAAA ATGAGAGCTCTGAGAAACAACGTCATCGCTCACAAGAAGCCTAACGCAGAGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCACGAAAAGCAATAGAGCCATGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAACCTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGTAAAAGCTGGTCCAGCTGTTGGCAAAGCTGGCGGCGAAAAATGGAAATCATTGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAAAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAGAACCTCAATTGCTGTGCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCACAGAAATCATCCTCTGAGGTCCATGATGAAGCAGGGCAAGAAGCTAGCTCTAGCTCTTAG MRALRNNVIAHKKPNAEMLKQRKAEMKSTKSNRAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGPAVGKAGGEKWKSLSDAEKAPYAEKALKRKAEYEIALEAYKKNLNCCAGAEAEIEMPTESQKSSSEVHDEAGQEASSSS Homology
BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24 Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.0e-22 Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21 Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 9.8e-21 Identity = 65/129 (50.39%), Postives = 79/129 (61.24%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20 Identity = 66/139 (47.48%), Postives = 83/139 (59.71%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 5.5e-59 Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 9.4e-59 Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58 Identity = 125/149 (83.89%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54 Identity = 120/149 (80.54%), Postives = 129/149 (86.58%), Query Frame = 0
BLAST of Lcy07g011810 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51 Identity = 120/157 (76.43%), Postives = 129/157 (82.17%), Query Frame = 0
BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida]) HSP 1 Score: 238.0 bits (606), Expect = 5.1e-59 Identity = 126/149 (84.56%), Postives = 137/149 (91.95%), Query Frame = 0
BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata]) HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58 Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58 Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_022140698.1 (high mobility group B protein 3-like [Momordica charantia]) HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58 Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0
BLAST of Lcy07g011810 vs. NCBI nr
Match: XP_022971125.1 (high mobility group B protein 3-like [Cucurbita maxima]) HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58 Identity = 125/149 (83.89%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 ) HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26 Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0
BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 ) HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26 Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0
BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 ) HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26 Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0
BLAST of Lcy07g011810 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 ) HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26 Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 0
BLAST of Lcy07g011810 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 ) HSP 1 Score: 105.9 bits (263), Expect = 2.8e-23 Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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