Lcy07g011760 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011760
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	Chr07: 40894317 .. 40895961 (+)
RNA-Seq Expression	Lcy07g011760
Synteny	Lcy07g011760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACTTACTACCCACCACCACCATTACCAATTTTTTCCTCTTCCTGCTGAGCGCAGTCTTCATCTTCATCTTCATCTTCTTCTTCACATCTTCATCTTCTTCCTCGATCCCCTCTTCCTCGCGGGCCCCACTCTCACCAACTTCCTCAACTTCAATTTCAAGGTATTATTCAATCTCTCGCATCGAATCGCATCGCAATTCTTTCTCTATTTTTCAATTCTATTTGCGTACGTATCTGTCTTTATTTGAGCTTCCTTGTTCCGATTTCTTCACTTTGATTGTTGATTGTTCCTTGATTTTTGGTGGGCTAATGAAGTTGTATTTGTATCCGATTCGATCGCTGAATATGACTTCTGCACAGTAATTTTTTCTTTCCGATTAGTTTGAATCTGGTGTCGGATAGGTTTTGACCTTGAACGTGATTTGAGGGCTTCGATGCATGGTTGTTTGATGAATCAGGAAAATTATTTGAATCTGTGTTGCTGATTAATGATTTGGTGCCAATGCTTTGAATCTCATCTGATGGAAGTGACTTTTGATCCTGGAAGGATCTTCTTCCACTTTACTTTTTCCCTACTGTTTTGTAGACTGTTTCTTGTAGGACATGTTTGTGCTTTGTTCAGACCGTCCAAAAACAGGTATGGAAACTTGGATTTATATTATATTATATATATTTAATTTGTGAGTTTGCCTTTTCTATTTTTACAGGTGTCATAGTTTGAGAACTGGTTTTACTGTATAATATCTAAAATCAACAGATTCATTGTCTTAAAGATAAATAAGTTTGATACAATGTATATTTATTTAACTTTACAAATTCAACTCAGAAGTCAAACGCCTCTTCAGTTTTGGTGGGGTTTGATTTCTATTTCTTCTTTGCGAAGATTGTCTATTGGGGATTTGGTAGGTGGGTTGGCCCTTGTCGTCTCCTTTCTCTTCTGTTTGTCTGTATGTCCCAGTTTTTCCAGATGGTCTCACTGATTTGGTTTCTATTTTAATGGGATAATCTAGAAATGATGATATGACAAGATTTTCTTGAATTGACAGAAAGATCTCATCATTATAAGTCTAGGCTACAGGCTGATAATTTTAACTCAATTCATCTATCCTTACACTGTTTACTACAATTAATCAAGGATACTGTGTAAATTGTAATTTTCTATCATGTTCATCAAGCTGTTTTTGATAAATTTTTGGAAAATCATAGTTGGAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGCAATTATGGAGTTGAAGACGACGATGACAAGGTGGTTGCAAAGAAAGGGAGCGGCAATGGCAATAGTAGCAAGAAGATGGCCGAGGTAAAGGCAGCAGCCTCAGCTGGGTTTGTGAAGGCAAAGGCTGTTGCAGCTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAACCAGTACCAGAAAAAGGTCTCCAAATGACTCTACAAATGAATGGACTGTCCCTGTTGAACATTTTCACTTAAATATAACTTGTAGTCTGGATACTTTGTAGTTTTGTGAAACAAACCTCCTGATTATTATTTGTTTCCCTGCATTTTGTCAAACCCAAAAATCAATCTAAAGAAGTAAACAGATTTTTCAGAGAA

mRNA sequence

AAGACTTACTACCCACCACCACCATTACCAATTTTTTCCTCTTCCTGCTGAGCGCAGTCTTCATCTTCATCTTCATCTTCTTCTTCACATCTTCATCTTCTTCCTCGATCCCCTCTTCCTCGCGGGCCCCACTCTCACCAACTTCCTCAACTTCAATTTCAAGTTGGAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGCAATTATGGAGTTGAAGACGACGATGACAAGGTGGTTGCAAAGAAAGGGAGCGGCAATGGCAATAGTAGCAAGAAGATGGCCGAGGTAAAGGCAGCAGCCTCAGCTGGGTTTGTGAAGGCAAAGGCTGTTGCAGCTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAACCAGTACCAGAAAAAGGTCTCCAAATGACTCTACAAATGAATGGACTGTCCCTGTTGAACATTTTCACTTAAATATAACTTGTAGTCTGGATACTTTGTAGTTTTGTGAAACAAACCTCCTGATTATTATTTGTTTCCCTGCATTTTGTCAAACCCAAAAATCAATCTAAAGAAGTAAACAGATTTTTCAGAGAA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGCAATTATGGAGTTGAAGACGACGATGACAAGGTGGTTGCAAAGAAAGGGAGCGGCAATGGCAATAGTAGCAAGAAGATGGCCGAGGTAAAGGCAGCAGCCTCAGCTGGGTTTGTGAAGGCAAAGGCTGTTGCAGCTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAACCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAAVGAQKVKSGTSVGIKWVKNQYQKKVSK

Homology

[Close]

BLAST of Lcy07g011760 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDD-DKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDD +  V KKGS NGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of Lcy07g011760 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDD-DKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD +  V KKGS NGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  AVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
            VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

[Close]

BLAST of Lcy07g011760 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.2e-25
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWGSG++G E+DD+K+V KK S +G SSKKMAE KAAASAGF KAKA A+
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 VGAQKVKSGTSVGLKWVKKQYQKKSS 85

[Close]

BLAST of Lcy07g011760 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.0e-22
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWG+G +GV+++DDK+V K  S +G +  K+ EVKAAASAGF KAK+ AA
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61 VGAQKVKAGTSAGIKWVKKQYQKKGS 84

[Close]

BLAST of Lcy07g011760 vs. ExPASy TrEMBL
Match: A0A2P5EE64 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_203810 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.0e-22
Identity = 67/98 (68.37%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
           MGSKAPSW+DQWG  N+GVE DDDK    KG G+G SSKKMAE KA ASAG  KAKA AA
Sbjct: 12  MGSKAPSWSDQWGGNNFGVEGDDDKAGTNKGKGSG-SSKKMAEAKAMASAGLGKAKAAAA 71

Query: 61  V-----------GAQKVKSGTSVGIKWVKNQYQKKVSK 88
           V           GAQKVKSGTS+GIKWVKNQYQK+ SK
Sbjct: 72  VGADKAKVAAIFGAQKVKSGTSLGIKWVKNQYQKRTSK 108

[Close]

BLAST of Lcy07g011760 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
           MGSKAPSWADQWGSGNYGVE DDDK+VAKKGS NG+SSKKM EVKAAASAGFVKAKAVAA
Sbjct: 91  MGSKAPSWADQWGSGNYGVE-DDDKMVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVAA 150

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 151 VGAQKVKSGTSVGIKWVKNQYQKKVSK 176

[Close]

BLAST of Lcy07g011760 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.9e-32
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDD-DKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDD +  V KKGS NGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of Lcy07g011760 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
           MGSKAPSWADQWGSGNYGVE DDDK+VAKKGSGNG+SSKKM EVKAAASAGFVKAKAVAA
Sbjct: 80  MGSKAPSWADQWGSGNYGVE-DDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 139

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKK 85
           VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 140 VGAQKVKSGTSVGIKWVKNQYQKK 162

[Close]

BLAST of Lcy07g011760 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWGSG+YGVEDDD+  + KKGS NGNSSKKMA+VKAAASAGFVKAK+ AA
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 87

[Close]

BLAST of Lcy07g011760 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWGSG+YGVEDDD+  + KKGS NGNSSKKMA+VKAAASAGFVKAK+ AA
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86

[Close]

BLAST of Lcy07g011760 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.4e-05
Identity = 33/81 (40.74%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 7  SWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAAVGAQKV 66
          SWA+QW S                G G G SSK     K    AG  K KA A+ G +KV
Sbjct: 5  SWAEQWDS-----NQQSSGKTTHGGEGGGASSK----YKEKVGAGLGKTKAAASSGLKKV 64

Query: 67 KSGTSVGIKWVKNQYQKKVSK 88
          K GTS+G+ WVK++Y K  +K
Sbjct: 65 KIGTSLGLNWVKDKYNKTTTK 76

[Close]

BLAST of Lcy07g011760 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 32/84 (38.10%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 7  SWADQW---GSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAAVGA 66
          SWADQW   G    G       VV   GSG  +++ K    K     G  K KAVA+ G 
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTK---YKEKMGQGLDKTKAVASSGF 64

Query: 67 QKVKSGTSVGIKWVKNQYQKKVSK 88
          +K+K+G+++G +WVK++Y K   K
Sbjct: 65 KKLKTGSAIGFRWVKDKYHKTTHK 85

[Close]

BLAST of Lcy07g011760 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.0e-04
Identity = 29/84 (34.52%), Postives = 39/84 (46.43%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKVVAKKGSGNGNSSKKMAEVKAAASAGFVKAKAVAA 60
           M S+APSWADQWG+G  GV   ++    KK      + KK  + KA              
Sbjct: 573 MASEAPSWADQWGTGGIGVMAAEETTDGKKDV----TGKKSGKTKA-------------- 632

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKK 85
            G  K K    +G+ W+KN  Q+K
Sbjct: 633 -GINKAKIVVFIGVNWMKNLVQRK 637

The following BLAST results are available for this feature:

BLAST of Lcy07g011760 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKS5	3.3e-32	92.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LR11	3.3e-32	92.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1	[more]
A0A5C7HG95	5.2e-25	79.07	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1	[more]
V4UEV4	7.0e-22	70.93	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ...	[more]
A0A2P5EE64	7.0e-22	68.37	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orien...	[more]

BLAST of Lcy07g011760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034974.1	2.4e-32	94.25	hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0059574.1	6.9e-32	92.05	hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865...	[more]
KAG6604861.1	1.2e-31	95.24	hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010736.1	1.5e-31	88.51	hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570886.1	2.2e-30	87.21	hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy07g011760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	3.4e-05	40.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	1.3e-04	38.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11740.1	5.0e-04	34.52	ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR33386:SF13	ANKYRIN REPEAT PROTEIN	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g011760.1	Lcy07g011760.1	mRNA