Lcy07g011650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr07: 40757145 .. 40757939 (+)
RNA-Seq Expression	Lcy07g011650
Synteny	Lcy07g011650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATAATCTAAACAAGGAGGAGCTAGCAAAAGGGATTCTAATCATGTGGAAAATCTGGGAAGCCAGAAACAGAGTTTGTAATTCAGCCCAGAAAGTAGAAGCAGATTGGATCAAGCACTCCATAGAAGAAAGCTTTAAAGATTGGGAGTCTTCTTACCTCAAGACCCAATCTCCGATTAGGCCAGGGAGCTGTGTGAGTCAAGCACAATGGCAAAAGCCTCCTCCCAATTGCTGGAAATTGAACTCCGACGCCGTCTGGTTCGAGAAAGAAGGCAGTGGCGGGATGGGTTGGTTGGTGCGTGACTCAGAGGGCTCCTTGATCTGTATTGGATTTCACCAAATTGACAGGAAATGATCAATTAAATCGTTGGAGGCTAGAACAATCTTGGAGGGTCTTAAACAAATTTTGAATACCTGTAATCAGAGGCGGATTCCCCTCATCATCGAGTCAGATGCACTTGAAGTGGTCAGAGCTCTGAACGGCGAAGTTGAGGACCTTTCGGACTTGAAGTCTTTCACGGAAGAGATTCGCGCCATAGCTGATCGTTCTTTCTCCGCGAAATTTGTCCATTGTAGCCAATTTTTGAACACAGAGGCACATTGTGTTGCGAGGAGAGCTGCTTCTCTCCTCCGTTCCCCTCTCTCCTCTTCTCTGTCTCCTTCATCATCTTCTTCTATCTCTGGTGTTTTGTTTTCGCGGGAAAGGGAACACATCTTTTGGGCCCCTAATATCCCTAATTTCATTTACCCTCTCATTAATGAGGGAAGGTGTAATGGTTGTTTGGTTTAG

mRNA sequence

ATGGTAGATAATCTAAACAAGGAGGAGCTAGCAAAAGGGATTCTAATCATGTGGAAAATCTGGGAAGCCAGAAACAGAGTTTGTAATTCAGCCCAGAAAGTAGAAGCAGATTGGATCAAGCACTCCATAGAAGAAAGCTTTAAAGATTGGGAGTCTTCTTACCTCAAGACCCAATCTCCGATTAGGCCAGGGAGCTGTGTGAGTCAAGCACAATGGCAAAAGCCTCCTCCCAATTGCTGGAAATTGAACTCCGACGCCGTCTGGTTCGAGAAAGAAGGCAGTGGCGGGATGGGTTGGTTGAGGCGGATTCCCCTCATCATCGAGTCAGATGCACTTGAAGTGGTCAGAGCTCTGAACGGCGAAGTTGAGGACCTTTCGGACTTGAAGTCTTTCACGGAAGAGATTCGCGCCATAGCTGATCGTTCTTTCTCCGCGAAATTTGTCCATTGTAGCCAATTTTTGAACACAGAGGCACATTGTGTTGCGAGGAGAGCTGCTTCTCTCCTCCGTTCCCCTCTCTCCTCTTCTCTGTCTCCTTCATCATCTTCTTCTATCTCTGGTGTTTTGTTTTCGCGGGAAAGGGAACACATCTTTTGGGCCCCTAATATCCCTAATTTCATTTACCCTCTCATTAATGAGGGAAGGTGTAATGGTTGTTTGGTTTAG

Coding sequence (CDS)

ATGGTAGATAATCTAAACAAGGAGGAGCTAGCAAAAGGGATTCTAATCATGTGGAAAATCTGGGAAGCCAGAAACAGAGTTTGTAATTCAGCCCAGAAAGTAGAAGCAGATTGGATCAAGCACTCCATAGAAGAAAGCTTTAAAGATTGGGAGTCTTCTTACCTCAAGACCCAATCTCCGATTAGGCCAGGGAGCTGTGTGAGTCAAGCACAATGGCAAAAGCCTCCTCCCAATTGCTGGAAATTGAACTCCGACGCCGTCTGGTTCGAGAAAGAAGGCAGTGGCGGGATGGGTTGGTTGAGGCGGATTCCCCTCATCATCGAGTCAGATGCACTTGAAGTGGTCAGAGCTCTGAACGGCGAAGTTGAGGACCTTTCGGACTTGAAGTCTTTCACGGAAGAGATTCGCGCCATAGCTGATCGTTCTTTCTCCGCGAAATTTGTCCATTGTAGCCAATTTTTGAACACAGAGGCACATTGTGTTGCGAGGAGAGCTGCTTCTCTCCTCCGTTCCCCTCTCTCCTCTTCTCTGTCTCCTTCATCATCTTCTTCTATCTCTGGTGTTTTGTTTTCGCGGGAAAGGGAACACATCTTTTGGGCCCCTAATATCCCTAATTTCATTTACCCTCTCATTAATGAGGGAAGGTGTAATGGTTGTTTGGTTTAG

Protein sequence

MVDNLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRRIPLIIESDALEVVRALNGEVEDLSDLKSFTEEIRAIADRSFSAKFVHCSQFLNTEAHCVARRAASLLRSPLSSSLSPSSSSSISGVLFSREREHIFWAPNIPNFIYPLINEGRCNGCLV

Homology

[Close]

BLAST of Lcy07g011650 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 50/188 (26.60%), Postives = 76/188 (40.43%), Query Frame = 0


Query: 1   MVDNLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSP 60
           +V+ L+ EE+A  ++I W+IWE+RNR     + ++   +  SI           L   S 
Sbjct: 22  LVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSI----------VLFINSN 81

Query: 61  IRPGSCVSQ----------------------AQWQKPPPNCWKLNSDAVWFEKEGSGGMG 120
           I  G+C+SQ                       +W  PP NCWKLN+DA W E+   GG+G
Sbjct: 82  IDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIG 141

Query: 121 WL----------------------------------------RRIPLIIESDALEVVRAL 127
           W+                                         R P+ +ESD++EV+R +
Sbjct: 142 WILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLM 199

[Close]

BLAST of Lcy07g011650 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 54/212 (25.47%), Postives = 87/212 (41.04%), Query Frame = 0


Query: 2   VDNLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESF--KDWESSYLKTQS 61
           +D   +EE  + ++I W+IWE RN+        E   I+ +I+         ++ LK +S
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKS 60

Query: 62  P------IRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRR----------- 121
                  IR     + AQW+ P  N WKLN++A W     +GG+GW+ R           
Sbjct: 61  TNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASC 120

Query: 122 -----------------------------IPLIIESDALEVVRALNGEVEDLSDLKSFTE 166
                                         P+ +ESD+LE +  L+ + +D +++    E
Sbjct: 121 RIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLE 180

[Close]

BLAST of Lcy07g011650 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 53/220 (24.09%), Postives = 89/220 (40.45%), Query Frame = 0


Query: 2   VDNLNKEELAKGILIMWKIWEARNR-----VCNSAQKVEADWIKHSIEESFKDWE---SS 61
           +D   +EE  + ++I W+IWE RN+     V +  + ++    ++ I  + +D      S
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 62  YLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRR----------- 121
             K    IR     + A+W+ P  N WKLN+DA W     +GG+GW+ R           
Sbjct: 61  ANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADC 120

Query: 122 -------------------------------------IPLIIESDALEVVRALNGEVEDL 166
                                                 P+ +ESD+LE +  L+ + +D 
Sbjct: 121 RIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQ 180

[Close]

BLAST of Lcy07g011650 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 45/177 (25.42%), Postives = 72/177 (40.68%), Query Frame = 0


Query: 13  GILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQAQW 72
           G++++W IW  RN++ +S  +        +  ES     ++ L     +   +      W
Sbjct: 19  GLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGW 78

Query: 73  QKPPPNCWKLNSDAVWFEKEGSGGMGWLRR------------------------IPLIIE 132
             P  + WKLN DA W +   +GG+GW+ R                        I + +E
Sbjct: 79  TPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTLEAGIKIEME 138

Query: 133 SDALEVVRALNGEVEDLSDLKSFTEEIRAIADRSFSAKFVHCSQFLNTEAHCVARRA 166
           SD LEVV  +N     L+++    E+I    +      F H     N  AH +ARRA
Sbjct: 139 SDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRA 195

[Close]

BLAST of Lcy07g011650 vs. ExPASy TrEMBL
Match: A0A7H4LNH2 (Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS4790 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 37/124 (29.84%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 4   NLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRP 63
           NLN +E  K  L++W+ W  RNR         +D I HSI+  F        K +   + 
Sbjct: 105 NLNDDEKIKSCLLLWRWWHERNRANAGDAIKSSDEILHSIDYLF----MHICKVKQNEKM 164

Query: 64  GSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRRIPLIIESDALEVVRALNGEVE 123
                  +W +PPP   K+N+D  + ++  +GG G+      +I  D  EV+ A  G +E
Sbjct: 165 QKQQQDGRWSRPPPGTLKINTDGAFLKETNTGGWGF------VIRDDCGEVMAAGAGNLE 218

Query: 124 DLSD 128
            +SD
Sbjct: 225 RVSD 218

[Close]

BLAST of Lcy07g011650 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-10
Identity = 50/188 (26.60%), Postives = 76/188 (40.43%), Query Frame = 0


Query: 1   MVDNLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSP 60
           +V+ L+ EE+A  ++I W+IWE+RNR     + ++   +  SI           L   S 
Sbjct: 22  LVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSI----------VLFINSN 81

Query: 61  IRPGSCVSQ----------------------AQWQKPPPNCWKLNSDAVWFEKEGSGGMG 120
           I  G+C+SQ                       +W  PP NCWKLN+DA W E+   GG+G
Sbjct: 82  IDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIG 141

Query: 121 WL----------------------------------------RRIPLIIESDALEVVRAL 127
           W+                                         R P+ +ESD++EV+R +
Sbjct: 142 WILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLM 199

[Close]

BLAST of Lcy07g011650 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-07
Identity = 54/212 (25.47%), Postives = 87/212 (41.04%), Query Frame = 0


Query: 2   VDNLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESF--KDWESSYLKTQS 61
           +D   +EE  + ++I W+IWE RN+        E   I+ +I+         ++ LK +S
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKS 60

Query: 62  P------IRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRR----------- 121
                  IR     + AQW+ P  N WKLN++A W     +GG+GW+ R           
Sbjct: 61  TNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASC 120

Query: 122 -----------------------------IPLIIESDALEVVRALNGEVEDLSDLKSFTE 166
                                         P+ +ESD+LE +  L+ + +D +++    E
Sbjct: 121 RIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLE 180

[Close]

BLAST of Lcy07g011650 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-07
Identity = 53/220 (24.09%), Postives = 89/220 (40.45%), Query Frame = 0


Query: 2   VDNLNKEELAKGILIMWKIWEARNR-----VCNSAQKVEADWIKHSIEESFKDWE---SS 61
           +D   +EE  + ++I W+IWE RN+     V +  + ++    ++ I  + +D      S
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 62  YLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRR----------- 121
             K    IR     + A+W+ P  N WKLN+DA W     +GG+GW+ R           
Sbjct: 61  ANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADC 120

Query: 122 -------------------------------------IPLIIESDALEVVRALNGEVEDL 166
                                                 P+ +ESD+LE +  L+ + +D 
Sbjct: 121 RIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQ 180

[Close]

BLAST of Lcy07g011650 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-06
Identity = 45/177 (25.42%), Postives = 72/177 (40.68%), Query Frame = 0


Query: 13  GILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQAQW 72
           G++++W IW  RN++ +S  +        +  ES     ++ L     +   +      W
Sbjct: 19  GLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGW 78

Query: 73  QKPPPNCWKLNSDAVWFEKEGSGGMGWLRR------------------------IPLIIE 132
             P  + WKLN DA W +   +GG+GW+ R                        I + +E
Sbjct: 79  TPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQSLTLEAGIKIEME 138

Query: 133 SDALEVVRALNGEVEDLSDLKSFTEEIRAIADRSFSAKFVHCSQFLNTEAHCVARRA 166
           SD LEVV  +N     L+++    E+I    +      F H     N  AH +ARRA
Sbjct: 139 SDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIARRA 195

[Close]

BLAST of Lcy07g011650 vs. NCBI nr
Match: SPT20161.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-06
Identity = 37/124 (29.84%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 4   NLNKEELAKGILIMWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRP 63
           NLN +E  K  L++W+ W  RNR         +D I HSI+  F        K +   + 
Sbjct: 105 NLNDDEKIKSCLLLWRWWHERNRANAGDAIKSSDEILHSIDYLF----MHICKVKQNEKM 164

Query: 64  GSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLRRIPLIIESDALEVVRALNGEVE 123
                  +W +PPP   K+N+D  + ++  +GG G+      +I  D  EV+ A  G +E
Sbjct: 165 QKQQQDGRWSRPPPGTLKINTDGAFLKETNTGGWGF------VIRDDCGEVMAAGAGNLE 218

Query: 124 DLSD 128
            +SD
Sbjct: 225 RVSD 218

The following BLAST results are available for this feature:

BLAST of Lcy07g011650 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQG0	2.4e-10	26.60	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CP26	6.6e-08	25.47	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	1.1e-07	24.09	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D4B6	2.1e-06	25.42	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A7H4LNH2	2.8e-06	29.84	Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCU...	[more]

BLAST of Lcy07g011650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143317.1	5.0e-10	26.60	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_022143535.1	1.4e-07	25.47	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	2.3e-07	24.09	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022148549.1	4.4e-06	25.42	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
SPT20161.1	5.7e-06	29.84	unnamed protein product [Triticum aestivum]	[more]

BLAST of Lcy07g011650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 104..165 e-value: 4.9E-7 score: 29.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g011650.1	Lcy07g011650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity