Lcy07g011180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr07: 40272876 .. 40274197 (-)
RNA-Seq Expression	Lcy07g011180
Synteny	Lcy07g011180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAATCGCCCAACTTGCCAATTTCCCCATTATCAAATCATAAAGCCCTTCTTCTCTTTTCTCTTCACTTTCTTCAAATTTAAGTTGCTGCCACTGCCACGCCCACGCCCACGCCAACCCATTAATTTAATCCTCCATTAATCCCAACCCCTTCTGCAACACATCATGTGGCGGCTGATTGCAGCTCTTCGCCCCACCCTCCACAACTTCACCAACAGCCACCGCGTTGCCGACGAGAGCATGTTCACAACAACAGATGAATTGGAATTGCCCATCTACGCCGCCAACCACCACCGCCCCGCCGCTCACCGCACCTTCTCCGCCATCTTCACCATCATTCGCGCCCCTTTCTCTCTTCTCTCTTGCTTCTCTCCGCCGCCCGTTCACGCCGCCGCCGACCACTATTTTGCCTCTACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGCTACGCCATGTTGATGTAGAACTTAGAACTAGAAACTAGAACTAGAACAAACACTCCCAAAAAGTAATTAAAAAATCAAAACTTTAGCTTTTATTTCGCTTCTAGGACAATAATAATCACTTGGGATTTTTTCTTTTAGTTAGTTAAATTCCATTCAGTGTCTGTTTCTAATTTCTTGTATTGTTTTCAGACGACCCTGATCCCAATCCCATGAATTAAATTAAAAAGCTTTCTCTTTTCCCAAGAATATCAATTACTCTTTCTTTTTCCCCCTTTTTTTTTCTCTAAATAAATGCATGTGTACACAATTAATGGAGTAATTAAGTACATGAAACAGAAACGTATCAATGGATTTCCTAGTACCTATGATCTCCATATGCTTGACTTACCTTTAGTTTTTTTGTTCTTCTGTTAACTGATCTTTTTAGTTTTTACTACAAAAAGAAACAAGGGATTTTAATTTAGATTTTTTTAAGGGAAGGATGAGGAAGAATCTTGCAGGTAAAGCACAAAACATTTGAGAATTCTTAAATATTCTTAATTACAACTACTGTTCAACGGAGGATCACTACACTACTCCACTGTGTATGTCTGTATTTATACTGTTATTATAGCGTATAATCGCATAATTTTGTGGGGAGCAGTTTAAAAGAAAAAGAGACCCATCTATCAAATTTAGCGATTAATTAAGTATAGTTTAATTAAAGTGATTAAATATTATGGACCTACTTTAATTTCTTTATAATTATTAATTTTCTTTTAGACGACCAATGTTTGTGCAACATATATATGACCCATATATCAAAAAAGCACCTTTAATCGAAGAAGGTCCTTTTGGAGGTACCAAAGCTCGTCTTTTGCT

mRNA sequence

CAAAAAATCGCCCAACTTGCCAATTTCCCCATTATCAAATCATAAAGCCCTTCTTCTCTTTTCTCTTCACTTTCTTCAAATTTAAGTTGCTGCCACTGCCACGCCCACGCCCACGCCAACCCATTAATTTAATCCTCCATTAATCCCAACCCCTTCTGCAACACATCATGTGGCGGCTGATTGCAGCTCTTCGCCCCACCCTCCACAACTTCACCAACAGCCACCGCGTTGCCGACGAGAGCATGTTCACAACAACAGATGAATTGGAATTGCCCATCTACGCCGCCAACCACCACCGCCCCGCCGCTCACCGCACCTTCTCCGCCATCTTCACCATCATTCGCGCCCCTTTCTCTCTTCTCTCTTGCTTCTCTCCGCCGCCCGTTCACGCCGCCGCCGACCACTATTTTGCCTCTACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGCTACGCCATGTTGATGTAGAACTTAGAACTAGAAACTAGAACTAGAACAAACACTCCCAAAAAGTAATTAAAAAATCAAAACTTTAGCTTTTATTTCGCTTCTAGGACAATAATAATCACTTGGGATTTTTTCTTTTAGTTAGTTAAATTCCATTCAGTGTCTGTTTCTAATTTCTTGTATTGTTTTCAGACGACCCTGATCCCAATCCCATGAATTAAATTAAAAAGCTTTCTCTTTTCCCAAGAATATCAATTACTCTTTCTTTTTCCCCCTTTTTTTTTCTCTAAATAAATGCATGTGTACACAATTAATGGAGTAATTAAGTACATGAAACAGAAACGTATCAATGGATTTCCTAGTACCTATGATCTCCATATGCTTGACTTACCTTTAGTTTTTTTGTTCTTCTGTTAACTGATCTTTTTAGTTTTTACTACAAAAAGAAACAAGGGATTTTAATTTAGATTTTTTTAAGGGAAGGATGAGGAAGAATCTTGCAGGTAAAGCACAAAACATTTGAGAATTCTTAAATATTCTTAATTACAACTACTGTTCAACGGAGGATCACTACACTACTCCACTGTGTATGTCTGTATTTATACTGTTATTATAGCGTATAATCGCATAATTTTGTGGGGAGCAGTTTAAAAGAAAAAGAGACCCATCTATCAAATTTAGCGATTAATTAAGTATAGTTTAATTAAAGTGATTAAATATTATGGACCTACTTTAATTTCTTTATAATTATTAATTTTCTTTTAGACGACCAATGTTTGTGCAACATATATATGACCCATATATCAAAAAAGCACCTTTAATCGAAGAAGGTCCTTTTGGAGGTACCAAAGCTCGTCTTTTGCT

Coding sequence (CDS)

ATGTGGCGGCTGATTGCAGCTCTTCGCCCCACCCTCCACAACTTCACCAACAGCCACCGCGTTGCCGACGAGAGCATGTTCACAACAACAGATGAATTGGAATTGCCCATCTACGCCGCCAACCACCACCGCCCCGCCGCTCACCGCACCTTCTCCGCCATCTTCACCATCATTCGCGCCCCTTTCTCTCTTCTCTCTTGCTTCTCTCCGCCGCCCGTTCACGCCGCCGCCGACCACTATTTTGCCTCTACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGCTACGCCATGTTGATGTAG

Protein sequence

MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTFSAIFTIIRAPFSLLSCFSPPPVHAAADHYFASTISETNHLMVSDGMRYAMLM

Homology

[Close]

BLAST of Lcy07g011180 vs. ExPASy TrEMBL
Match: A0A6J1J5Y3 (uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.7e-41
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYA-ANHH---RPAAHRTFSAIFT 60
           MWRLIAALRPTLHNFTNSHRVADESMFTTT   E PIYA ANHH   RPAAHRTFSA+F+
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT---EFPIYAVANHHHHRRPAAHRTFSAVFS 60

Query: 61  IIRAPFSLLSCFSPPPVHAAA-------DHYFASTISETNHLMVSDGMRYAMLM 104
           IIRAPFS+LSCF+PPPVH++A       DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Lcy07g011180 vs. ExPASy TrEMBL
Match: A0A6J1FWB0 (uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC111448722 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.2e-40
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYA-ANHH---RPAAHRTFSAIFT 60
           MWRLIAALRPTLHNFTNSHRVADESMFTTT   E PIYA ANHH   RPAAHRT +A+F+
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT---EFPIYAVANHHHRRRPAAHRTIAAVFS 60

Query: 61  IIRAPFSLLSCFSPPPVHAAA-------DHYFASTISETNHLMVSDGMRYAMLM 104
           IIRAPFS+LSCF+PPPVH++A       DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Lcy07g011180 vs. ExPASy TrEMBL
Match: A0A5A7UIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001420 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 76/111 (68.47%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTFS-AIFTIIR 60
           MWR+ A +RPTLHNFTNSHR+ADESMFTTTD  + P YAA  +     RTFS AIF IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNSHRIADESMFTTTD--QFPTYAAAANN---RRTFSTAIFNIIR 60

Query: 61  APFSLLSCFSPPPVH-------AAADHYFASTISETNHLMVSDGMRYAMLM 104
           APFS+LSCF+PP VH        + DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 61  APFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Lcy07g011180 vs. ExPASy TrEMBL
Match: A0A0A0KFS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTF-SAIFTIIR 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+TD  + PIYAA ++R    RTF S+IF IIR
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTD--QFPIYAAANNR----RTFSSSIFNIIR 60

Query: 61  APFSLLSCFSPPPVH-------AAADHYFASTISETNHLMVSDGMRYAMLM 104
           APFS+LSCF+PP VH        + DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 61  APFSILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Lcy07g011180 vs. ExPASy TrEMBL
Match: A0A5D3CJA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00520 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.8e-30
Identity = 75/111 (67.57%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTFS-AIFTIIR 60
           MWR+ A +RPTLHNFTN+HR+ADESMFTTTD  + P YAA  +     RTFS AIF IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTD--QFPTYAAAANN---RRTFSTAIFNIIR 60

Query: 61  APFSLLSCFSPPPVH-------AAADHYFASTISETNHLMVSDGMRYAMLM 104
           APFS+LSCF+PP VH        + DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 61  APFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Lcy07g011180 vs. NCBI nr
Match: XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])

HSP 1 Score: 176.8 bits (447), Expect = 9.7e-41
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYA-ANHH---RPAAHRTFSAIFT 60
           MWRLIAALRPTLHNFTNSHRVADESMFTTT   E PIYA ANHH   RPAAHRTFSA+F+
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT---EFPIYAVANHHHHRRPAAHRTFSAVFS 60

Query: 61  IIRAPFSLLSCFSPPPVHAAA-------DHYFASTISETNHLMVSDGMRYAMLM 104
           IIRAPFS+LSCF+PPPVH++A       DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Lcy07g011180 vs. NCBI nr
Match: XP_023513038.1 (uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 93/115 (80.87%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYA-ANHH----RPAAHRTFSAIF 60
           MWRLIAALRPTLHNFTNSHRVADESMFTTT   E PIYA ANHH    RPAAHRTFSA+F
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT---EFPIYAVANHHHHRRRPAAHRTFSAVF 60

Query: 61  TIIRAPFSLLSCFSPPPVHAAA-------DHYFASTISETNHLMVSDGMRYAMLM 104
           +IIRAPFS+LSCF+PPPVH++A       DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 61  SIIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 112

[Close]

BLAST of Lcy07g011180 vs. NCBI nr
Match: XP_022944204.1 (uncharacterized protein LOC111448722 [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYA-ANHH---RPAAHRTFSAIFT 60
           MWRLIAALRPTLHNFTNSHRVADESMFTTT   E PIYA ANHH   RPAAHRT +A+F+
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT---EFPIYAVANHHHRRRPAAHRTIAAVFS 60

Query: 61  IIRAPFSLLSCFSPPPVHAAA-------DHYFASTISETNHLMVSDGMRYAMLM 104
           IIRAPFS+LSCF+PPPVH++A       DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Lcy07g011180 vs. NCBI nr
Match: KAA0053319.1 (uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-30
Identity = 76/111 (68.47%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTFS-AIFTIIR 60
           MWR+ A +RPTLHNFTNSHR+ADESMFTTTD  + P YAA  +     RTFS AIF IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNSHRIADESMFTTTD--QFPTYAAAANN---RRTFSTAIFNIIR 60

Query: 61  APFSLLSCFSPPPVH-------AAADHYFASTISETNHLMVSDGMRYAMLM 104
           APFS+LSCF+PP VH        + DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 61  APFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Lcy07g011180 vs. NCBI nr
Match: XP_011656875.1 (uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical protein Csa_005504 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-30
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTF-SAIFTIIR 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+TD  + PIYAA ++R    RTF S+IF IIR
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTD--QFPIYAAANNR----RTFSSSIFNIIR 60

Query: 61  APFSLLSCFSPPPVH-------AAADHYFASTISETNHLMVSDGMRYAMLM 104
           APFS+LSCF+PP VH        + DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 61  APFSILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Lcy07g011180 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTFSAIFTIIRA 60
           M ++++ LR  L N   S RVAD++   ++     P   AN  R      F+++  I+R 
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDG----FNSV--IMRF 60

Query: 61  PFSLLSCFSPPPVHAAADHYFAS----TISETNHLMVSDGMRYAMLM 104
           PFS++SCF+ P V +  D  + S    +ISE NHLMVSD MRYA+LM
Sbjct: 61  PFSIISCFAVPRV-SGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Lcy07g011180 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-09
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTDELELPIYAANHHRPAAHRTFSAIFTIIRA 60
           M ++++ LR  L N   S RVADES         LP    N      + +      I++ 
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADES--------ALPSTTVNGDHGGGNGSNGG---IMKF 60

Query: 61  PFSLLSCFSPPPVHAAADHYFAS----TISETNHLMVSDGMRYAMLM 104
           P S++SCFS P V + AD  + S     +SE NHLMV DGMRYA+LM
Sbjct: 61  PLSIMSCFSVPRV-SRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of Lcy07g011180 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5Y3	4.7e-41	81.58	uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748...	[more]
A0A6J1FWB0	5.2e-40	79.82	uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A5A7UIL8	2.2e-30	68.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KFS1	2.2e-30	67.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1	[more]
A0A5D3CJA9	4.8e-30	67.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy07g011180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985817.1	9.7e-41	81.58	uncharacterized protein LOC111483748 [Cucurbita maxima]	[more]
XP_023513038.1	1.3e-40	80.87	uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo]	[more]
XP_022944204.1	1.1e-39	79.82	uncharacterized protein LOC111448722 [Cucurbita moschata]	[more]
KAA0053319.1	4.5e-30	68.47	uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa]	[more]
XP_011656875.1	4.5e-30	67.57	uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical ...	[more]

BLAST of Lcy07g011180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	1.9e-10	40.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	4.7e-09	39.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g011180.1	Lcy07g011180.1	mRNA