Lcy07g009790 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g009790
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr07: 38670711 .. 38671112 (-)
RNA-Seq ExpressionLcy07g009790
SyntenyLcy07g009790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA

mRNA sequence

ATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA

Coding sequence (CDS)

ATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA

Protein sequence

MEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSKCPRLSNSLAHELAQAAQSHGDFVWFCDRSLPIDREDEVFWRKNVFPSWFYEIITNGVGVPNLAS
Homology
The following BLAST results are available for this feature:
BLAST of Lcy07g009790 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g009790 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g009790 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g009790 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..85
e-value: 4.9E-5
score: 23.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..87
e-value: 2.9E-5
score: 26.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g009790.1Lcy07g009790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity