Lcy07g009740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g009740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr07: 38637967 .. 38640518 (-)
RNA-Seq Expression	Lcy07g009740
Synteny	Lcy07g009740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTAAGCCAGAAGATATTGCTACACAACCCATTGTGACGGTTTTTAGTTTTGAGAAGAGGATAATTGCTGGGTGTTCTGTTGTCCAATTTCTTTATTTATTAAAGAAAGAACTCAGCATGGTTAGTATCCTACAACTTAAGGAAAAGACTTTCTTGGAGAAGTATGTGACCAAGTTTCCTAAAGATGTTGTTACTTGGTTGTTACGTTTGTATACTGGAGAGGTCAAAGTTTTTGTTACTTGGTCTTTAATTTTTGATGTTGTTACTTGGTTCTTTCATTTTTTTTCAATGAAAGTTCCGTTGTTTATATAAAAAAAAAATGTTGTTACTTGGTTGTTAAATTCTTTCAGTGTGGTATTATTGTATCTCAATGGTACTTCTTGTATAGTGCTTTTAGTTTTTTATCTTAAGACCAATGCCTTTGAAAATATTGTTTACTGAGTTGTCTGAGTTAAATTATCTTCTTCCTTTCACCAAAGTTACCTTGTATAGTGCTTTTAGTTATCTGAGTTATACTTGGCTTTAGTTCTTTGGGTTTGCACTCTCAAGTTTCATCTGATTAATTTTAAAGCTCATAGGATATTACAGATTTTGTTCAATCTGGAAGATGAATTGATTACTAATATTCTGATTAAATGAGCTATACGTTCTAAGTCAGCACGAAATAAATATTGCAACTCTAATGAAACGCAACAATATATTATATATAGGTTTGGATCTCATTTGGTCTCTAGATATTTAAGGGCTCGTTTGATAACGTTCATGTTTCATGTTTCTTGTTCCCGTTTCTCATTTTTTAAGAAACATACTTGTTTGATAACTCATCCTTGTTTCTTGTATCTAAATTTCTAGAAACGTTTCTGAAAAAGAGGCCAAATTTGAGAAACTACAAAAAGTTGTTTCTCAAATCTGTTTCTGTTTCTTTTCTATCTTTCATGCATATATCCATCTCTCCCTACCATTCCTACACCAATCTCTTCTCTTCCTCTATTTTTTTAAACACTTCCTCGTCTTTTTTTTAATCTTTTCCGTTATTTCGTTCTCCTTCCTTTTTAATTTTTTTTTTCTTTTTTCGTTATTTCTTTCTGTTTCCTTTTTTTATTATTTATGTTATTTCTTTACATTTTTCCTTTTTTTTATCATCTTCGTCGATCTCTTACTACCGATCGCCGCTGACCTCCACCGATCAGTCGCCATCGTTGACCTCCGACTATAGATCGCCGCCAACCTCCGTCGACCAGCCGCTACCGTCAACCTCCGACTATCGATCGTCGCCGATCGACCGCCACCGTCGACCTTCAACTACGGGTCGCTGTCGACCTCCGCTGACCGACTCTCACCGTCAACCTCCCACTACCGGTTGTCACTGACTTCTGTCAACCGACCACTACCGTCGACCTCTGACTATTAGCCGTCGTCGACCTCCGTCGAACGACCGCCACCATCCACCTCCGACTATCGGTCGTCGTCGACTGGTTCGACCTTCGACTACCAATCGCAGTCGGTCGCTACTGTCAACTTCCGACGACCAGCCACTATCGACCTCCGCTGACCGACCAGTGCCGATCGACCGCCACTATCGACCTTCGACTATCAGCCGTCCTTGACCTCCACCAACCGACCACCACCGTCCACCTCTGACTACCGGTCGTCGTTGGCCTCCGTCGACCAGTCGCCATCATCTACCTCCGACTATCGGTCGCAATCGACTTCTACCGTCGACCTTCAACGACCGGTCGCTGTCGACCTCCGTTGACCGACCGCCACTGTTGACCTCCGACTACTGGCTACCATTGACCGATCACCACCGTCGACCTCTGATATCAGCCGTTGTCGACCTCTACTGACCAATCGCCATTGTCGACCTCTGACTACTAGGCGCCACCATCGACCTCTGACTATCGGGTGTCGCCGACAGGCCGCCATCGTCGACCTCCGAATACCGGCTGCAGTCGATCGCTACTGTCGACCTCCGACGACCAGTCGCCGACCGACCGCCACCGTCCACCTCTGAATACCGATCGTCGTCGATCTCCATCGAGCTACAACTACCGGCCACACTCGACCGCTACCGTCAAACGGTCGCAGTCGACCTCCGCTGACCAGCCTTTGCCGACCGACCGCTACCGTCGACTACCGATCGTCATCGACCTCCGCTGACCGACGCCACCATCCACCTTCGACCACTGGTCGTCATCGTCGACCTCCGATTACCAGTCGCGGCCGACTGCTACCGTTGACCTCCGAAGAACCGTCGTTGTTGGCCTCCACTGACCAATCGGTCACCACCATTGACCTCAAACTACTGGCTGCTACCGACCTCTACTAACCGGTTGCTACCATCGACCTCTGACTATTAGTCGTCGCCGACCTCCGCTGAATGACTGCTACTGTCGACCTCTGACTATCAGGCACCACCGTCGACCTCCGACTACCGACCGCCACCATCGACCTGCGACTACTGGTCGTTGCCTACCTCTGTCGACCGGCTGCCATCATCGACCTCTGACTACCAACCGAGACCGACCACTACCGTCGACCTTTGA

mRNA sequence

ATGGGGTTTAAGCCAGAAGATATTGCTACACAACCCATTGTGACGGTTTTTAGTTTTGAGAAGAGGATAATTGCTGGGTGTTCTGTTGTCCAATTTCTTTATTTATTAAAGAAAGAACTCAGCATGGTTAGTATCCTACAACTTAAGGAAAAGACTTTCTTGGAGAAGTATGTGACCAAGTTTCCTAAAGATGTTGTTACTTGGTTGTTACGTTTGTATACTGGAGAGATCGCCGCCAACCTCCGTCGACCAGCCGCTACCGTCAACCTCCGACTATCGATCGTCGCCGATCGACCGCCACCGTCGACCTTCAACTACGGGTCGCTGTCGACCTCCGCTGACCGACTCTCACCGTCAACCTCCCACTACCGCCGTCGTCGACCTCCGTCGAACGACCGCCACCATCCACCTCCGACTATCGGTCGTCGTCGACTGGTTCGACCTTCGACTACCAATCGCAGTCGTGCCGATCGACCGCCACTATCGACCTTCGACTATCAGCCGTCCTTGACCTCCACCAACCGACCACCACCGTCCACCTCTGACTACCGGTCGTCGTTGGCCTCCGTCGACCAGTCGCCATCATCTACCTCCGACTATCGGTCGCAATCGACTTCTACCGTCGACCTTCAACGACCGGCGCCACCATCGACCTCTGACTATCGGGTGTCGCCGACAGGCCGCCATCGTCGACCTCCGAATACCGGCTGCAGTCGATCGCTACTGTCGACCTCCGACGACCAGTCGCCGACCGACCGCCACCGTCCACCTCTGAATACCGATCGTCGTCGATCTCCATCGAGCTACAACTACCGGCCACACTCGACCGCTACCGTCAAACGGTCGCAGTCGACCTCCGCTGACCAGCCTTTGCCGACCGACCGCTACCGTCGACTACCGATCGCACCACCGTCGACCTCCGACTACCGACCGCCACCATCGACCTGCGACTACTGGTCGTTGCCTACCTCTGTCGACCGGCTGCCATCATCGACCTCTGACTACCAACCGAGACCGACCACTACCGTCGACCTTTGA

Coding sequence (CDS)

ATGGGGTTTAAGCCAGAAGATATTGCTACACAACCCATTGTGACGGTTTTTAGTTTTGAGAAGAGGATAATTGCTGGGTGTTCTGTTGTCCAATTTCTTTATTTATTAAAGAAAGAACTCAGCATGGTTAGTATCCTACAACTTAAGGAAAAGACTTTCTTGGAGAAGTATGTGACCAAGTTTCCTAAAGATGTTGTTACTTGGTTGTTACGTTTGTATACTGGAGAGATCGCCGCCAACCTCCGTCGACCAGCCGCTACCGTCAACCTCCGACTATCGATCGTCGCCGATCGACCGCCACCGTCGACCTTCAACTACGGGTCGCTGTCGACCTCCGCTGACCGACTCTCACCGTCAACCTCCCACTACCGCCGTCGTCGACCTCCGTCGAACGACCGCCACCATCCACCTCCGACTATCGGTCGTCGTCGACTGGTTCGACCTTCGACTACCAATCGCAGTCGTGCCGATCGACCGCCACTATCGACCTTCGACTATCAGCCGTCCTTGACCTCCACCAACCGACCACCACCGTCCACCTCTGACTACCGGTCGTCGTTGGCCTCCGTCGACCAGTCGCCATCATCTACCTCCGACTATCGGTCGCAATCGACTTCTACCGTCGACCTTCAACGACCGGCGCCACCATCGACCTCTGACTATCGGGTGTCGCCGACAGGCCGCCATCGTCGACCTCCGAATACCGGCTGCAGTCGATCGCTACTGTCGACCTCCGACGACCAGTCGCCGACCGACCGCCACCGTCCACCTCTGAATACCGATCGTCGTCGATCTCCATCGAGCTACAACTACCGGCCACACTCGACCGCTACCGTCAAACGGTCGCAGTCGACCTCCGCTGACCAGCCTTTGCCGACCGACCGCTACCGTCGACTACCGATCGCACCACCGTCGACCTCCGACTACCGACCGCCACCATCGACCTGCGACTACTGGTCGTTGCCTACCTCTGTCGACCGGCTGCCATCATCGACCTCTGACTACCAACCGAGACCGACCACTACCGTCGACCTTTGA

Protein sequence

MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLYLLKKELSMVSILQLKEKTFLEKYVTKFPKDVVTWLLRLYTGEIAANLRRPAATVNLRLSIVADRPPPSTFNYGSLSTSADRLSPSTSHYRRRRPPSNDRHHPPPTIGRRRLVRPSTTNRSRADRPPLSTFDYQPSLTSTNRPPPSTSDYRSSLASVDQSPSSTSDYRSQSTSTVDLQRPAPPSTSDYRVSPTGRHRRPPNTGCSRSLLSTSDDQSPTDRHRPPLNTDRRRSPSSYNYRPHSTATVKRSQSTSADQPLPTDRYRRLPIAPPSTSDYRPPPSTCDYWSLPTSVDRLPSSTSDYQPRPTTTVDL

Homology

[Close]

BLAST of Lcy07g009740 vs. ExPASy TrEMBL
Match: A0A6J1DPE0 (uncharacterized protein LOC111023077 OS=Momordica charantia OX=3673 GN=LOC111023077 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.6e-19
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG KPEDIAT+P V VFS EKRII  CSVVQ LY   LLKKEL + SIL   EKTFLEKY
Sbjct: 303 MGLKPEDIATRPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELIITSILHPTEKTFLEKY 362

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD V WLL LYTGE+
Sbjct: 363 VTKFPKD-VAWLLHLYTGEV 381

[Close]

BLAST of Lcy07g009740 vs. ExPASy TrEMBL
Match: A0A6J1K118 (uncharacterized protein LOC111491435 OS=Cucurbita maxima OX=3661 GN=LOC111491435 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-17
Identity = 57/80 (71.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG    DIAT+P V VFS EKRII  CSVVQ LY   LLKKELS+ SIL   EKTFLEKY
Sbjct: 152 MGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELSIASILHPTEKTFLEKY 211

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD  TWLL LYTGE+
Sbjct: 212 VTKFPKD-ATWLLHLYTGEV 230

[Close]

BLAST of Lcy07g009740 vs. ExPASy TrEMBL
Match: A0A6J1H460 (uncharacterized protein LOC111459443 OS=Cucurbita moschata OX=3662 GN=LOC111459443 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-17
Identity = 57/80 (71.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG    DIAT+P V VFS EKRII  CSVVQ LY   LLKKELS+ SIL   EKTFLEKY
Sbjct: 152 MGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELSIASILHPTEKTFLEKY 211

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD  TWLL LYTGE+
Sbjct: 212 VTKFPKD-ATWLLHLYTGEV 230

[Close]

BLAST of Lcy07g009740 vs. ExPASy TrEMBL
Match: A0A3P8WH92 (Uncharacterized protein OS=Cynoglossus semilaevis OX=244447 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 106/322 (32.92%), Postives = 136/322 (42.24%), Query Frame = 0


Query: 79   ANLRRPAATVNLRLSIVADRPPPSTFNYG--SLSTSADRLSPSTSHYR------------ 138
            A  R P  TV  R S   DRPPP T   G  +  T+ DR  P T+  R            
Sbjct: 1028 ARPRPPTTTVGPRPSTTTDRPPPPTTTAGRPNPPTTTDRPRPLTTTVRPRPPTATGSPRP 1087

Query: 139  -----RRRPPSNDRHHPPPT-IGRRRLVRPSTTNRSR------ADRPPLSTFDYQPSLTS 198
                 R RPP+     PPPT  GR     P+TT+R R        RPP +T   +P  T+
Sbjct: 1088 STTTARPRPPTTTARPPPPTPTGRPN--PPTTTDRPRPPTTTDRPRPPTTTARPRPPTTT 1147

Query: 199  TNRPPPSTSDYRSSLASVDQSPSSTSDYRSQSTSTVDLQRPAPPSTSDY-RVSPTGRHRR 258
                PP+T+  R +  +   SP   +             RP PP+T+D  R   T    R
Sbjct: 1148 ARPHPPTTTAGRPNPPTTTASPPPPTTTARPHPPPTTAGRPNPPTTTDRPRPLTTTVRPR 1207

Query: 259  PPNTGCSRSLLSTSDDQSP---TDRHRPPLNTDRRRSPSSYNYRPH-----------STA 318
            PP T  S    +T+    P   TDR RPP  T R R PS+   RPH            T 
Sbjct: 1208 PPTTTASPPPPTTTATPRPPTTTDRPRPPTTTARPR-PSTTTARPHPPTTTAGRPNPPTT 1267

Query: 319  TVKRSQSTSADQPLP---TDRYR--------RLPIA-----PPSTSDYRPPPSTCDYWSL 343
            T + +  T+ D+P P   TDR R        R P       PP+T+   PPP+T +    
Sbjct: 1268 TARPNPPTTTDRPRPPTTTDRPRPPTTTARPRPPTTTASPPPPTTTASPPPPTTTESPHP 1327

[Close]

BLAST of Lcy07g009740 vs. ExPASy TrEMBL
Match: A0A084WAA4 (AGAP005951-PA-like protein OS=Anopheles sinensis OX=74873 GN=ZHAS_00015078 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 88/250 (35.20%), Postives = 115/250 (46.00%), Query Frame = 0


Query: 98  RPPPSTFNYGSLSTSADRLSPSTSHYRRRRPPSNDRHHPPPTIGRRRLVRPSTTNRSRAD 157
           RPPP+T       T+     P+T+  R R PP+  R  PPPT  R R   P TT R R  
Sbjct: 284 RPPPTTTRPRPPPTTRPPPPPTTT--RPRPPPTTTRPRPPPTTTRPR--PPPTTTRPRP- 343

Query: 158 RPPLSTFDYQPSLTSTNRPPPSTSDYRSSLASVDQSPSSTSDYRSQSTSTVDLQRPAPPS 217
            PP +T    P  T+  RPPP+T+  +    +    P  T+  R +   T    RP PP+
Sbjct: 344 -PPTTTRPRPPPTTTRPRPPPTTTRPKPPPTTRPPPPPPTTT-RPRPPPTTTRPRP-PPT 403

Query: 218 TSDYRVSPTGRHRRPPNTGCSRSLLSTSDDQSP---TDRHRPPLNTDR-RRSPSSYNYRP 277
           T+  R  PT    RPP T        T+    P   T R RPP  T R R  P++   RP
Sbjct: 404 TTRPRPPPTTTRPRPPPTTTRPKPPPTTTRPKPPPTTTRPRPPPTTTRPRPPPTTTRPRP 463

Query: 278 HSTATVKRSQSTSADQPLPTDRYRRLPIAPPSTSDYRPPPSTCDYWSLPTSV-DRLPSST 337
             T T  R   T+   P PT      P  PP+T+  RPPP+T      PT+   + P +T
Sbjct: 464 PPTTTRPRPPPTTRPPPPPT---TTRPRPPPTTTRPRPPPTTTRPRPPPTTTRPKPPPTT 522

Query: 338 SDYQPRPTTT 343
           +  +P PTTT
Sbjct: 524 TRPKPPPTTT 522

[Close]

BLAST of Lcy07g009740 vs. NCBI nr
Match: XP_022156115.1 (uncharacterized protein LOC111023077 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-18
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG KPEDIAT+P V VFS EKRII  CSVVQ LY   LLKKEL + SIL   EKTFLEKY
Sbjct: 303 MGLKPEDIATRPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELIITSILHPTEKTFLEKY 362

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD V WLL LYTGE+
Sbjct: 363 VTKFPKD-VAWLLHLYTGEV 381

[Close]

BLAST of Lcy07g009740 vs. NCBI nr
Match: XP_022958119.1 (uncharacterized protein LOC111459443 [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-17
Identity = 57/80 (71.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG    DIAT+P V VFS EKRII  CSVVQ LY   LLKKELS+ SIL   EKTFLEKY
Sbjct: 152 MGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELSIASILHPTEKTFLEKY 211

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD  TWLL LYTGE+
Sbjct: 212 VTKFPKD-ATWLLHLYTGEV 230

[Close]

BLAST of Lcy07g009740 vs. NCBI nr
Match: KAG7035624.1 (Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-17
Identity = 57/80 (71.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG    DIAT+P V VFS EKRII  CSVVQ LY   LLKKELS+ SIL   EKTFLEKY
Sbjct: 263 MGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELSIASILHPTEKTFLEKY 322

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD  TWLL LYTGE+
Sbjct: 323 VTKFPKD-ATWLLHLYTGEV 341

[Close]

BLAST of Lcy07g009740 vs. NCBI nr
Match: XP_022996117.1 (uncharacterized protein LOC111491435 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-17
Identity = 57/80 (71.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG    DIAT+P V VFS EKRII  CSVVQ LY   LLKKELS+ SIL   EKTFLEKY
Sbjct: 152 MGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELSIASILHPTEKTFLEKY 211

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD  TWLL LYTGE+
Sbjct: 212 VTKFPKD-ATWLLHLYTGEV 230

[Close]

BLAST of Lcy07g009740 vs. NCBI nr
Match: KAG6605716.1 (Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 8.6e-17
Identity = 57/80 (71.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           MG    DIAT+P V VFS EKRII  CSVVQ LY   LLKKELS  SIL   EKTFLEKY
Sbjct: 209 MGLMAVDIATKPTVMVFSLEKRIIPRCSVVQSLYSKGLLKKELSFASILHPTEKTFLEKY 268

Query: 61  VTKFPKDVVTWLLRLYTGEI 78
           VTKFPKD  TWLL LYTGE+
Sbjct: 269 VTKFPKD-ATWLLHLYTGEV 287

[Close]

BLAST of Lcy07g009740 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.0e-07
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFLY---LLKKELSMVSILQLKEKTFLEKY 60
           M   P  IA  P+V  FS EKRII  CSV + L    L+K++ S+ S+L   EK FLEK 
Sbjct: 325 MNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKL 384

Query: 61  VTKFPKDVVTWLLRLYTG 76
           V K+ +++   L+ LY G
Sbjct: 385 VIKYEEELPE-LMNLYLG 401

[Close]

BLAST of Lcy07g009740 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-05
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 1   MGFKPEDIATQPIVTVFSFEKRIIAGCSVVQFL----YLL---KKELSMVSILQLKEKTF 60
           MG + E +A +P V  ++ EKR+I    V+Q L     LL   KK+ +MV I+++ E+ F
Sbjct: 296 MGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAF 355

Query: 61  LEKYVTKFPKDVVTWLLRLY 74
           LEKYV +F  ++   LL  Y
Sbjct: 356 LEKYVVRFGDEIAEELLVAY 375

The following BLAST results are available for this feature:

BLAST of Lcy07g009740 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g009740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPE0	7.6e-19	73.75	uncharacterized protein LOC111023077 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1K118	3.2e-17	71.25	uncharacterized protein LOC111491435 OS=Cucurbita maxima OX=3661 GN=LOC111491435...	[more]
A0A6J1H460	3.2e-17	71.25	uncharacterized protein LOC111459443 OS=Cucurbita moschata OX=3662 GN=LOC1114594...	[more]
A0A3P8WH92	1.1e-09	32.92	Uncharacterized protein OS=Cynoglossus semilaevis OX=244447 PE=4 SV=1	[more]
A0A084WAA4	1.0e-07	35.20	AGAP005951-PA-like protein OS=Anopheles sinensis OX=74873 GN=ZHAS_00015078 PE=4 ...	[more]

BLAST of Lcy07g009740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156115.1	1.6e-18	73.75	uncharacterized protein LOC111023077 [Momordica charantia]	[more]
XP_022958119.1	6.6e-17	71.25	uncharacterized protein LOC111459443 [Cucurbita moschata]	[more]
KAG7035624.1	6.6e-17	71.25	Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argy...	[more]
XP_022996117.1	6.6e-17	71.25	uncharacterized protein LOC111491435 [Cucurbita maxima]	[more]
KAG6605716.1	8.6e-17	71.25	Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argy...	[more]

BLAST of Lcy07g009740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	5.0e-07	43.59	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	1.6e-05	38.75	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..68 e-value: 1.5E-6 score: 29.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..345
None	No IPR available	PANTHER	PTHR13068:SF133	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 1..76
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g009740.1	Lcy07g009740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding