Lcy07g008460 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g008460
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr07: 36831235 .. 36833312 (-)
RNA-Seq ExpressionLcy07g008460
SyntenyLcy07g008460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCTGACGACAGGTTTTTGGACGTACAATTAATTTTGCTATATATGCAATTAGTTTGCAACTGTGCTATATTTGCTATTAATTTGGTCCAATTTTTCATCTATGCAACTACCCCATAAAATTATTCACATAAAAAAAATACTATTTATAAAATTATTCTCATATAAAAATTAGCGTTCCTAGATGTATAACCAAGCACTGCAATCTATGGTTTCCAACCATTTTATTTTCAAACATCTTATTCTCATCCATCTATTATTTCAGGAATATTAGAGAAACTTTAAGCCCCATCTCTAAGGACATGTTTGAAAGTGAGTTTAAATGGTTAAATGAGTTCTCTTATTAATTACTGCATCTTATTAAATGGTTAAAATCACTTCTTTCATGTTCAAAATCACCCCAAGTATACCTTTAATCATTTAAAATCAATTTTGATTATTATGATAATCACGTTTAAGTAAATCCAAACTTCTTATAATCAAATCATATGGTAAGGCTTATATTGCCCCCAAAAATTTATCTTCTACGGTATGATCATTGAATAATGAGACTTCAGGCTTCTCAAAAACCAGAATAGTCTTCTTTTCAAGGTGCTTCGAGGTCGATATTTTGCCCATAATAACTATCTTGAAGCTTCCCTTGGGAACAACCCATCGCTAACCTGGAGGAGCATTCTTTGGGGCAGAGATCTCTTTAAAAAAGGGATGAAATTGAGAGTGGGTAATGGCCTTCATATTCGGATCAAAGAGGACCCGTGGCTTCCTAGGTCGGGATGTTATACTCCTCTCTAGATTAAAGAAGAGCTCTATGGAAAAAATGTTGAGTTCTTAATTGATGAATATGGCCACTGGAAAGAAGATTTGATTAGAGCATCCTTTTTAACCCCCGACTCAGACTCGATTCTTGAGATCCCTCTTGGTAACAGGGATGTTAAGGATGTCATCATCTGGGGTCCGGACACAAAAGGCCTTTTCTCGGTTAAGAGTGCTTATCATCTAGCCTATAATCTTTCTCAGGCCGGAAAAGGCTCTTCCTCTGATTCCTATCCGATCACCTCTTTTTGGAGAAGTTTTTGGAAAGTGAGCTCTGCTCCTAGAGATAAGATTTGCACTTGGAGAATGATTCAAAACTCTCTCCCTACTCAAGCCAACATCTTAGCTAAAGGCATAGATATTAATCCTCTTTGTTTTTTTTGCAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGTTTGGCTTTATTTTTTTCCCAAGCTGAATTTGGTCTCAAATTTTTTCAGGGGTGAGCTGGTAGATAGCTCAAAGGAGGTTGATATTTCTATAGCTATGAAGATTATCTGGAGTATTTGGTACTTTAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAGATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCTTGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCTTCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTTTTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTTGCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTTTTTAA

mRNA sequence

AATCTGACGACAGGTTTTTGGACGTACAATTAATTTTGCTATATATGCAATTAGTTTGCAACTGTGCTATATTTGCTATTAATTTGGTCCAATTTTTCATCTATGCAACTACCCCATAAAATTATTCACATAAAAAAAATACTATTTATAAAATTATTCTCATATAAAAATTAGCGTTCCTAGATGTATAACCAAGCACTGCAATCTATGGTTTCCAACCATTTTATTTTCAAACATCTTATTCTCATCCATCTATTATTTCAGGAATATTAGAGAAACTTTAAGCCCCATCTCTAAGGACATGTTTGAAAGTGAGTTTAAATGGTTAAATGAGTTCTCTTATTAATTACTGCATCTTATTAAATGGTTAAAATCACTTCTTTCATGTTCAAAATCACCCCAAGTATACCTTTAATCATTTAAAATCAATTTTGATTATTATGATAATCACGTTTAAGTAAATCCAAACTTCTTATAATCAAATCATATGGTAAGGCTTATATTGCCCCCAAAAATTTATCTTCTACGGTATGATCATTGAATAATGAGACTTCAGGCTTCTCAAAAACCAGAATAGTCTTCTTTTCAAGGTGCTTCGAGGTCGATATTTTGCCCATAATAACTATCTTGAAGCTTCCCTTGGGAACAACCCATCGCTAACCTGGAGGAGCATTCTTTGGGGCAGAGATCTCTTTAAAAAAGGGATGAAATTGAGAGTGGGTAATGGCCTTCATATTCGGATCAAAGAGGACCCGTGGCTTCCTAGGTCGGGATGTTATACTCCTCTCTAGATTAAAGAAGAGCTCTATGGAAAAAATGTTGAGTTCTTAATTGATGAATATGGCCACTGGAAAGAAGATTTGATTAGAGCATCCTTTTTAACCCCCGACTCAGACTCGATTCTTGAGATCCCTCTTGGTAACAGGGATGTTAAGGATGTCATCATCTGGGGTCCGGACACAAAAGGCCTTTTCTCGGTTAAGAGTGCTTATCATCTAGCCTATAATCTTTCTCAGGCCGGAAAAGGCTCTTCCTCTGATTCCTATCCGATCACCTCTTTTTGGAGAAGTTTTTGGAAAGTGAGCTCTGCTCCTAGAGATAAGATTTGCACTTGGAGAATGATTCAAAACTCTCTCCCTACTCAAGCCAACATCTTAGCTAAAGGCATAGATATTAATCCTCTTTGTTTTTTTTGCAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGTTTGGCTTTATTTTTTTCCCAAGCTGAATTTGGTCTCAAATTTTTTCAGGGGTGAGCTGGTAGATAGCTCAAAGGAGGTTGATATTTCTATAGCTATGAAGATTATCTGGAGTATTTGGTACTTTAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAGATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCTTGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCTTCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTTTTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTTGCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTTTTTAA

Coding sequence (CDS)

ATGATTCAAAACTCTCTCCCTACTCAAGCCAACATCTTAGCTAAAGGCATAGATATTAATCCTCTTTGTTTTTTTTGCAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGTTTGGCTTTATTTTTTTCCCAAGCTGAATTTGGTCTCAAATTTTTTCAGGGGTGAGCTGGTAGATAGCTCAAAGGAGGTTGATATTTCTATAGCTATGAAGATTATCTGGAGTATTTGGTACTTTAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAGATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCTTGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCTTCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTTTTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTTGCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTTTTTAA

Protein sequence

MIQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNFFRGELVDSSKEVDISIAMKIIWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNFLASSISEEGVFCKEVLPHLLNSSFPGKSICLAGGGF
Homology
BLAST of Lcy07g008460 vs. ExPASy TrEMBL
Match: A0A1R3G1P9 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_29422 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-21
Identity = 73/276 (26.45%), Postives = 121/276 (43.84%), Query Frame = 0

Query: 1    MIQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNF 60
            +I N LPT+ N++ +G+D+  LC  C  + ES  H+F++CK S+ VW    P +NL  + 
Sbjct: 1174 LIWNILPTKGNLVFRGLDVPQLCEVCGKQPESVFHVFFRCKFSELVWDRVGPCVNLTLDQ 1233

Query: 61   FRGE-------LVDSSKEVDISIAMKIIWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCE 120
            +  +       +  ++    +   +  +W IW  RN                        
Sbjct: 1234 WNSDGDWWDFFIAKATSIGQLDKVLITLWLIWNNRN------------------------ 1293

Query: 121  KNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLL 180
                          + L  Q  W PPP+G+ KIN+D ++       GLG +  DS G ++
Sbjct: 1294 --------------KALYEQLTWIPPPMGIVKINTDVAFCSSSGEAGLGVVIRDSAGKII 1353

Query: 181  CAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDIS 240
                + +N        E+ A+  G +  + H      R I E+DS   I+ +N +     
Sbjct: 1354 ICASRCLNFIADSLYAEVHALLFGFELAIEH---GIERCIFESDSLLPITQINKKDPIFW 1408

Query: 241  EAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLA 270
            E   + +++ DLA L  D TF F  RE+N+ AH+LA
Sbjct: 1414 EGGHLIEEIRDLATLFDDYTFQFVHREANILAHNLA 1408

BLAST of Lcy07g008460 vs. ExPASy TrEMBL
Match: A0A7J6GQE2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014266 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-21
Identity = 79/316 (25.00%), Postives = 136/316 (43.04%), Query Frame = 0

Query: 1   MIQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNF 60
           M +N LP + N++ +G+ INP+C  C    E+  H  W C+  K+VW    P  N++ + 
Sbjct: 8   MCRNWLPAKTNLVHRGMKINPICTNCGRFDETLSHALWNCEKVKKVW-KLMPSYNIIKDS 67

Query: 61  FRGELVDSSKEVDISIA-------MKIIWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCE 120
               ++D   E    +A       +K++W+IW  RN         +   ++  V +SY  
Sbjct: 68  RGNSMMDLLVEFKHKLAKEEFEDVVKVLWAIWENRNRQWTNQHIMNGARLLDWVFNSYPR 127

Query: 121 KNHLIGGAPIRFSPENLSSQRP------WSPPPLGVWKINSDASWSEDQQRGGLGWIAHD 180
           + H           ENL+   P      W  PP+  + ++ DA+   +Q+  G+G++  D
Sbjct: 128 EIH---------GQENLTKMHPAAEKNQWQIPPVVTYCVHCDAALKPNQEGVGIGYVWQD 187

Query: 181 STGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNH 240
             G++L AG K       +   E +A+A  L +    +  PF    I  DS  ++  + H
Sbjct: 188 WKGNILSAGMKYQPIFCNVNIAEAQAVAAALNDKPKSVHHPFE---IRTDSKLLVDAIVH 247

Query: 241 RSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNFLASS 300
             + + +   V  ++           F+   R+ N+ AHSLA  ++   L  S  F  S 
Sbjct: 248 NGNSLDDMKPVVNQIKRHPNFSQCTKFNHVKRDHNLGAHSLAKRSLDKKLTHS--FYNSF 307

Query: 301 ISEEGVFCKEVLPHLL 304
                + CK  L H L
Sbjct: 308 PDWLTIVCKANLSHSL 308

BLAST of Lcy07g008460 vs. ExPASy TrEMBL
Match: A0A1R3KHA2 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01552 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.8e-21
Identity = 78/278 (28.06%), Postives = 125/278 (44.96%), Query Frame = 0

Query: 1    MIQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVW-------LYFFPK 60
            ++ N LPT++N+  +G++I   C  C  +  +  H+F+ C  SK VW       L    +
Sbjct: 1112 LVWNILPTKSNLNKRGMEIAGTCEVCGGEESADAHVFFNCHLSKLVWEDACPWVLSCIEQ 1171

Query: 61   LNLVSNFFRGELVDSSKEVDISIAMKIIWSIWYFRNSIKRGAGFPDAKSIIR---MVNSS 120
             +L  NF+   L  +           I+W +W   N     A      +I+R    +   
Sbjct: 1172 WDLNGNFWEFFLEKAKAIGQFDRVCTILWLLWGNSNRALYEAFCSMPNAIVRAATRILDQ 1231

Query: 121  YCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTG 180
             C     IG   +       S Q  W PPPLGV KIN+DAS+S +    GLG +  D  G
Sbjct: 1232 VCAATSRIGEILM-----GQSRQIAWMPPPLGVMKINTDASFSTENGEAGLGVVIRDDVG 1291

Query: 181  SLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSD 240
            +++ +G +++         E+ A+  G +     LE    R I+E+DS   I  +N    
Sbjct: 1292 NVIASGSRRLYFIADSLYAEVHAILFGFE---MALELGLDRCIVESDSLLAIREINKLDT 1351

Query: 241  DISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSL 269
               E   +  ++ +LA+L    +F F  RE+N+ AHSL
Sbjct: 1352 VFWEGGCLIHEIRELASLFEFCSFQFVNREANMLAHSL 1381

BLAST of Lcy07g008460 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-20
Identity = 82/287 (28.57%), Postives = 129/287 (44.95%), Query Frame = 0

Query: 4    NSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNFFRG 63
            N L  + N+  + +     C FC  + E+  H+F++C  ++  W  F   L L  +   G
Sbjct: 980  NILAVRHNLHRRRVPCTGECGFCGFQDETQAHIFFECDFARAFW--FASPLQLDVSKLAG 1039

Query: 64   E-----------LVDSSKEVDISIAMKI--IWSIWYFRNSIKRGAGFPDAKSII----RM 123
            E            ++SS+    +I   +  +W IW  RN         D   ++    + 
Sbjct: 1040 EDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQ 1099

Query: 124  VNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAH 183
            V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+GW+  
Sbjct: 1100 VSEFRTAKHDLQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIR 1159

Query: 184  DSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISIL 243
            DS G LLCAG +          +EL A+   L    + HL      II+E+DS + I +L
Sbjct: 1160 DSFGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKGILML 1219

Query: 244  NHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA 273
            N R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Sbjct: 1220 NGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 1260

BLAST of Lcy07g008460 vs. ExPASy TrEMBL
Match: A0A6J5UF50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-20
Identity = 82/287 (28.57%), Postives = 129/287 (44.95%), Query Frame = 0

Query: 4   NSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNFFRG 63
           N L  + N+  + +     C FC  + E+  H+F++C  ++  W  F   L L  +   G
Sbjct: 112 NILAVRHNLHRRRVPCTGECGFCGFQDETQAHIFFECDFARAFW--FASPLQLDVSKLAG 171

Query: 64  E-----------LVDSSKEVDISIAMKI--IWSIWYFRNSIKRGAGFPDAKSII----RM 123
           E            ++SS+    +I   +  +W IW  RN         D   ++    + 
Sbjct: 172 EDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQ 231

Query: 124 VNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAH 183
           V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+GW+  
Sbjct: 232 VSEFRTAKHDLQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIR 291

Query: 184 DSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISIL 243
           DS G LLCAG +          +EL A+   L    + HL      II+E+DS + I +L
Sbjct: 292 DSFGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL----TDIIVESDSQKGILML 351

Query: 244 NHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA 273
           N R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Sbjct: 352 NGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 392

BLAST of Lcy07g008460 vs. NCBI nr
Match: XP_015385738.1 (uncharacterized protein LOC107177034 [Citrus sinensis])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-24
Identity = 81/282 (28.72%), Postives = 131/282 (46.45%), Query Frame = 0

Query: 4   NSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLY------FFPKLNLV 63
           N LPT  N+  + I + P C  C+   E+  H    CK++K+VW Y      F   +N  
Sbjct: 7   NLLPTADNLWRREILLEPTCQICKQGKETTAHTLLLCKAAKKVWRYAPFETCFLDAVNQD 66

Query: 64  SNFFRGELVDSSKEVDISIAMKIIWSIWYFRNS-IKRGAGFPDAKSIIR--MVNSSYCEK 123
                 E+     + DI + + I W+IWY RN  +  G       +I R   V  +Y   
Sbjct: 67  MLEIMVEMAKKLTKSDIEVMVAICWTIWYGRNKFLFEGKKMEPLLTISRAEAVVEAYRRV 126

Query: 124 NHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLC 183
                    ++S +N   Q+ WSPPP   +K+N DA+ + D+Q+ GLG +  DS+  +  
Sbjct: 127 KQPTLDPEAKYSSKN---QQVWSPPPDNTFKVNVDAAVNFDRQKAGLGVVIRDSSNKVKV 186

Query: 184 AGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISE 243
           A  K       ++  E EA+  GL    S     F  I++E+D  EV+ ++N+     +E
Sbjct: 187 AAVKSTLFTGDVQTAEAEAVEWGLVVAKS---AAFQCIMVESDCQEVVKLINNNEGSRTE 246

Query: 244 AWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALN 277
              V  ++  L+    ++++  +PR  N  AHSLA  A+  N
Sbjct: 247 IMWVISEIQSLSKDFQNISYYHTPRSCNTHAHSLAKLALRNN 282

BLAST of Lcy07g008460 vs. NCBI nr
Match: XP_015388376.1 (uncharacterized protein LOC102612209 [Citrus sinensis])

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-23
Identity = 76/274 (27.74%), Postives = 139/274 (50.73%), Query Frame = 0

Query: 3   QNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLY--FFPKLNLVS-- 62
           QN LPT +N+  K +  +P C  C  K+ES  H+  +C+++++VW    F+  + L++  
Sbjct: 38  QNLLPTASNLWRKNVVRDPACQRCHCKSESVLHVLIECEAARKVWKLTDFYEDVKLMAQQ 97

Query: 63  ---NFFRGELVDSSKEVDISIAMKIIWSIWYFRNS-IKRGAGFPDAKSIIRMVNSSYCEK 122
              +  +G L    K+ ++   + + W+IWY RN  I  G       +  R        +
Sbjct: 98  DILSMLQG-LASRRKKKELEQIIAVCWAIWYARNRFIYEGKQEEPKLTAARASAIVESYR 157

Query: 123 NHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLC 182
              I   P R S  + +SQ+ W PPP G +K+N DA+      + GLG +  +S G ++ 
Sbjct: 158 RIKIQNGPAR-SIHHRNSQQIWKPPPDGKYKVNVDAAIQMSGLKAGLGVVIGNSNGKIIA 217

Query: 183 AGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISE 242
           A  K+++ K  + C+E EA+  G++  ++      P +IIE+DS+EV+ ++ +R   ++E
Sbjct: 218 AAVKRVSYKGTVACMEAEAILFGIQ--VAQQAECLP-MIIESDSTEVVELVLNRKGSMTE 277

Query: 243 AWIVAKKVADLAALVGDVTFSFSPRESNVEAHSL 269
                +++          +  F+PR+ N  AHS+
Sbjct: 278 ISWTVEEIKQRLMNHNTSSIQFAPRKCNAIAHSI 306

BLAST of Lcy07g008460 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-21
Identity = 76/280 (27.14%), Postives = 127/280 (45.36%), Query Frame = 0

Query: 2    IQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVW----LYFFPKLNLV 61
            ++N LPT  N+  +     P+C  C+ + E+  H+  +CK+++++W    L   P  +  
Sbjct: 1153 LKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIVQPSKDHN 1212

Query: 62   SNFFRG--ELVDSSKEVDISIAMKIIWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCEKN 121
             +FF    E+   S   +  + +   W IW  RN         D++ +    +S      
Sbjct: 1213 QDFFSAIQEMWSRSSTAEAELMIVYCWVIWSARNKFIFEGKKSDSRFLAAKADSVLKAYQ 1272

Query: 122  HLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCA 181
             +     +  + +    Q+ W PP   V K+N DA+ S   Q+ GLG I  D+ G +L  
Sbjct: 1273 RVSKPGNVHGAKDRGIDQQKWKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAEGKILAV 1332

Query: 182  GFKQINRKWPIKCLELEAMAVGLK--NLLSHLERPFPRIIIEADSSEVISILNHRSDDIS 241
            G KQ   +  +   E EA+  GL+  N +S        +I+E+D  EV+ +LN+     +
Sbjct: 1333 GIKQAQFRERVSLAEAEAIHWGLQVANQISS-----SSLIVESDCKEVVELLNNTKGSRT 1392

Query: 242  EAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAV 274
            E   +   V   +     V FSF PR  N  AH+LA FA+
Sbjct: 1393 EIHWILSDVRRESKEFKQVQFSFIPRTCNTYAHALAKFAL 1427

BLAST of Lcy07g008460 vs. NCBI nr
Match: OMO52016.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-20
Identity = 73/276 (26.45%), Postives = 121/276 (43.84%), Query Frame = 0

Query: 1    MIQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNF 60
            +I N LPT+ N++ +G+D+  LC  C  + ES  H+F++CK S+ VW    P +NL  + 
Sbjct: 1174 LIWNILPTKGNLVFRGLDVPQLCEVCGKQPESVFHVFFRCKFSELVWDRVGPCVNLTLDQ 1233

Query: 61   FRGE-------LVDSSKEVDISIAMKIIWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCE 120
            +  +       +  ++    +   +  +W IW  RN                        
Sbjct: 1234 WNSDGDWWDFFIAKATSIGQLDKVLITLWLIWNNRN------------------------ 1293

Query: 121  KNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLL 180
                          + L  Q  W PPP+G+ KIN+D ++       GLG +  DS G ++
Sbjct: 1294 --------------KALYEQLTWIPPPMGIVKINTDVAFCSSSGEAGLGVVIRDSAGKII 1353

Query: 181  CAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDIS 240
                + +N        E+ A+  G +  + H      R I E+DS   I+ +N +     
Sbjct: 1354 ICASRCLNFIADSLYAEVHALLFGFELAIEH---GIERCIFESDSLLPITQINKKDPIFW 1408

Query: 241  EAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLA 270
            E   + +++ DLA L  D TF F  RE+N+ AH+LA
Sbjct: 1414 EGGHLIEEIRDLATLFDDYTFQFVHREANILAHNLA 1408

BLAST of Lcy07g008460 vs. NCBI nr
Match: KAF4385133.1 (hypothetical protein F8388_014266 [Cannabis sativa])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-20
Identity = 79/316 (25.00%), Postives = 136/316 (43.04%), Query Frame = 0

Query: 1   MIQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNF 60
           M +N LP + N++ +G+ INP+C  C    E+  H  W C+  K+VW    P  N++ + 
Sbjct: 8   MCRNWLPAKTNLVHRGMKINPICTNCGRFDETLSHALWNCEKVKKVW-KLMPSYNIIKDS 67

Query: 61  FRGELVDSSKEVDISIA-------MKIIWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCE 120
               ++D   E    +A       +K++W+IW  RN         +   ++  V +SY  
Sbjct: 68  RGNSMMDLLVEFKHKLAKEEFEDVVKVLWAIWENRNRQWTNQHIMNGARLLDWVFNSYPR 127

Query: 121 KNHLIGGAPIRFSPENLSSQRP------WSPPPLGVWKINSDASWSEDQQRGGLGWIAHD 180
           + H           ENL+   P      W  PP+  + ++ DA+   +Q+  G+G++  D
Sbjct: 128 EIH---------GQENLTKMHPAAEKNQWQIPPVVTYCVHCDAALKPNQEGVGIGYVWQD 187

Query: 181 STGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNH 240
             G++L AG K       +   E +A+A  L +    +  PF    I  DS  ++  + H
Sbjct: 188 WKGNILSAGMKYQPIFCNVNIAEAQAVAAALNDKPKSVHHPFE---IRTDSKLLVDAIVH 247

Query: 241 RSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNFLASS 300
             + + +   V  ++           F+   R+ N+ AHSLA  ++   L  S  F  S 
Sbjct: 248 NGNSLDDMKPVVNQIKRHPNFSQCTKFNHVKRDHNLGAHSLAKRSLDKKLTHS--FYNSF 307

Query: 301 ISEEGVFCKEVLPHLL 304
                + CK  L H L
Sbjct: 308 PDWLTIVCKANLSHSL 308

BLAST of Lcy07g008460 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-19
Identity = 76/288 (26.39%), Postives = 120/288 (41.67%), Query Frame = 0

Query: 2   IQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLY------------ 61
           + NSLP    +  + +     C  C +  E+  HL ++C  ++  W              
Sbjct: 274 LSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWA 333

Query: 62  --FFPKLNLVSNFFRGELVDSSKEVDISIAMKIIWSIWYFRNS-IKRGAGFPDAKSIIRM 121
              +  L  V N   G   +   E    +   ++W +W  RN  + RG  F +A+ ++R 
Sbjct: 334 DSIYVNLYWVFNLGNG---NPQWEKASQLVPWLLWRLWKNRNELVFRGREF-NAQEVLRR 393

Query: 122 VNSSYCEKNHLIGGAPIRFSPE-NLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIA 181
                 E             P+ N SS   W PPP    K N+DA+W+ D +R G+GW+ 
Sbjct: 394 AEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVL 453

Query: 182 HDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISIL 241
            +  G +   G + + +   +   ELEAM      +LS     +  +I E+DS  +I IL
Sbjct: 454 RNEKGEVKWMGARALPKLKSVLEAELEAMRWA---VLSLSRFQYNYVIFESDSQVLIEIL 513

Query: 242 NHRSDDISEAWIVAK-KVADLAALVG---DVTFSFSPRESNVEAHSLA 270
           N+      E W   K  + DL  L+    +V F F PRE N  A  +A
Sbjct: 514 NN-----DEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVA 549

BLAST of Lcy07g008460 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 4.5e-18
Identity = 76/281 (27.05%), Postives = 124/281 (44.13%), Query Frame = 0

Query: 23  CFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNFFRGELVDS---------SKEVD 82
           C  C +  E+  HL ++C  ++ VW      ++ +  +  GE  DS         + EV+
Sbjct: 12  CVRCPDSRETVNHLLFKCCFARLVW-----AISPIPAYPEGEWTDSLYANLYWVLNLEVE 71

Query: 83  ISIAMKI-------IWSIWYFRNSIKRGAGFPDAKSIIRMVNSSYCE---KNHLIGGAPI 142
           I    KI       +W +W  RN +       DA  ++R     + E   +  L G A  
Sbjct: 72  IPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASG 131

Query: 143 RFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRK 202
                NLS Q  W  PP    K N+DA+W  +  R G+GWI  + +G +L  G + + R 
Sbjct: 132 PQVERNLSVQ--WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRT 191

Query: 203 WPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVA-KKV 262
             +   ELEA+      +L+     + RII E+D+  ++++LN  SDD       A + +
Sbjct: 192 KNVLEAELEALRWA---VLTMSRFNYKRIIFESDAQALVNLLN--SDDFWPTLQPALEDI 251

Query: 263 ADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNF 284
             L     +V F F+PR  N  A  +A  +++ +  D   F
Sbjct: 252 QQLLHHFEEVKFEFTPRGGNKVADRIARESISFSNYDPKLF 280

BLAST of Lcy07g008460 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-09
Identity = 33/145 (22.76%), Postives = 71/145 (48.97%), Query Frame = 0

Query: 2   IQNSLPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNLVSNFF 61
           +++ L T+  +++ G    PLC FC    E+ +HLF+ C+ ++EVW+YF  ++++     
Sbjct: 64  MRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRVHVFPPLL 123

Query: 62  RGE----LVDSSKEVDISIAMKI-----IWSIWYFRNS-IKRGAGFPDAKSIIRMVNSSY 121
             +    L +  ++ +++  +++     +++IW  RN+ +   A  P A  I+ + +   
Sbjct: 124 FEDGIRWLKNPCQDKNVTTILRLSHHASVYTIWKERNARLHDSASRPAAALILEIKSVIR 183

Query: 122 CEKNHLIGGAPIRFSPENLSSQRPW 137
           C  + L      R  P  +S    W
Sbjct: 184 CHLDPL--SRAQRLGPNRISFLATW 206

BLAST of Lcy07g008460 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-05
Identity = 39/154 (25.32%), Postives = 63/154 (40.91%), Query Frame = 0

Query: 131 SSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLE 190
           S    WSPP     K N DAS  E     GLGWI  +S G+++  G  +   +   +  E
Sbjct: 100 SRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAE 159

Query: 191 LEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSD--------DISEAWIVAKKV 250
              +   ++       +   ++I E D+  +  ++N +S         D  ++WI + + 
Sbjct: 160 CSTLIWAIQASYGFGHK---KVIFEGDNQTITRMINTKSSNPRLQHFLDTIQSWIPSFE- 219

Query: 251 ADLAALVGDVTFSFSPRESNVEAHSLACFAVALN 277
                    + FSF  RE N  A  LA  A+  N
Sbjct: 220 --------SIEFSFKHREQNGCADFLAKQAIKEN 241

BLAST of Lcy07g008460 vs. TAIR 10
Match: AT4G10613.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-05
Identity = 24/96 (25.00%), Postives = 44/96 (45.83%), Query Frame = 0

Query: 6   LPTQANILAKGIDINPLCFFCRNKTESGEHLFWQCKSSKEVWLYFFPKLNL--------- 65
           LPT+A +++ G+ I+PLC  C    E+ +HL   C  S  +W     +L L         
Sbjct: 9   LPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMVQARLRLQPVQFRVWE 68

Query: 66  -VSNFFRGELVDSSKEVDISIAMKIIWSIWYFRNSI 92
            + ++ +     S   +   +A   + +IW  RN++
Sbjct: 69  SLLSWIKLSTASSPSIIRKLVAQATVCAIWKQRNNL 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3G1P95.7e-2126.45Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_29422 PE=4 SV... [more]
A0A7J6GQE27.5e-2125.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014266 PE=4 SV=1[more]
A0A1R3KHA29.8e-2128.06Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01552 PE=4 ... [more]
A0A6J5UE592.2e-2028.57Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
A0A6J5UF502.2e-2028.57Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_015385738.15.1e-2428.72uncharacterized protein LOC107177034 [Citrus sinensis][more]
XP_015388376.11.9e-2327.74uncharacterized protein LOC102612209 [Citrus sinensis][more]
XP_006491472.11.1e-2127.14uncharacterized protein LOC102626455 [Citrus sinensis][more]
OMO52016.11.2e-2026.45reverse transcriptase [Corchorus capsularis][more]
KAF4385133.11.5e-2025.00hypothetical protein F8388_014266 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT4G29090.16.9e-1926.39Ribonuclease H-like superfamily protein [more]
AT2G34320.14.5e-1827.05Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT2G02520.18.5e-0922.76RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT5G65005.11.5e-0525.32Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G10613.12.0e-0525.00RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 142..273
e-value: 2.2E-11
score: 45.9
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 147..270
e-value: 7.5E-16
score: 58.1
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 1..47
e-value: 4.5E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 133..271
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 133..271
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 146..269
e-value: 1.55081E-17
score: 75.4284
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 143..274

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g008460.1Lcy07g008460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity