Lcy07g008250 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g008250
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr07: 36565430 .. 36569884 (-)
RNA-Seq ExpressionLcy07g008250
SyntenyLcy07g008250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAATAGGTCGAAAATGGACAATGAAAGTTCTCGAAGCTTCTGTGATTTTGGAGAAACTCAAAAGGATTTGTGATACCTGTGTGCAAAACCAAATCCCTCTTGAGGTAGAATTAGACGTTCTATCGATTGTGAGGGCTCTGAACAGCGAAGACATCGATCTCATGGAGGTGAAGTCGATCACTAAAGTCATCGCATTTGTTGCCTCTGGGTTCAAGGAGATTATCTTCAGCCATTGTAGGAGAGATTCGAACACAGTAGCCCACTGTGTCGCCAGACTTGCTTGTAACCCGAGCGCCCCAGACTACCCAACCCAAACCGAAAGGGTAGGGGTTGGGTTGAGATTTTTTTTTTTTTCGATTTGGGTTGGGTTGGTTTTTTATAGAACTGAAAAATCGGTTCGGTTAGTGGGTTTAGCTTTTTTTGGTTCGGTTCAACCCGAACCGAACCCATGTTATATATATGTTGGTATTGGTTTTTTTTTTTCTTTGAAATTATTTGGTGTTGTCACGGGCCTTCCAAACATTTTCTCCCTCACTGATTGGATCTCACCAAACCTTTACTGAAGGGATCGAATCCCAGTGGAAGCGATGTGAATCGTTTCGTAGTTTAATTTTGTTTCCAAATACCAATACATTGACAAATAAACATAGAGAAACAAATTTCTAAGTTTAATTTAAGAATAAGCATGCTTTGTGATTACTACTATTAAGGACACAAAACTTACTTTTGTTGTCGACTCAGGTACTACAACGGAAAACACCCTTTGGTTTCAACAGTCGCGTACACAACAACTTCACAGTAGACTGAATATGTTGAACACCACCACCACAGTAACACTACTATCCTTTGAGATCTAGCACAAGATTGTGGGATCCTTTACTTGAATTGGGAGAGAATTACATTAAGAATGGTAGTGTAATCTTGAGAATTTTTAGAGAGAAAAATTATAAAGGAAGCCTCCTGTGTTTCACCAATTGACAGACTGAGAAGAGAATGAATATCTTCCTTCCCTGTGATACGCGTGAGTGAAAGAGCCGATGAGAACGTGGGAAGTTACCACGTATTTGATAATGTGGGAAGTTACCATGTAATTAATATTAATATTAATTAAATTAATAACCATGAGCTGCTACGATATTGTAAGTTTCTTCCTCTTGCCAACAAGAGCATAGCTCAACTGGCATAAAGCTGTACTGATAACCATGAGGTTTGTGGCTCGAATCCCCTACCCCTACATATTGTAAAAAAAAAAAAAATTTCCTCCTGATAGAATCTGTAACCTTCATTAGCATATTCATTTTTTATGGTTTCCCTAATCAAACTAGAAGTTACAAAGAAACCATGCATAACACTGAATGGAGGGAGCCACCGAATACACCAGATACACCTAACATGTGGAATGGGTGCAAAATAAGATCAACTTTTTTTATTACATGATGTACTTCTCTGAAAAACATTGGCGCGCGTGTAAACGAGGTGCTAGACCAACTGAGCTATAGCCCTTGTGCTTGTCATAGATATAGTCATGTAGATAATTTCTTGGCAAGATGAATATTCTATGATATATTTTGTTGATTTGTTTGATTGGTATTGCTTATCAATAATATTATATTTATAATCTATTGATGTGATTATTTTAATTAATTAATTGACTATTAATTAAATCACATTTAATTAATCATTTCATTTAAATCATTTTTAAATGTATATCTTTGATATAACCTATAGTTTTAATTTAATTAAATCATGTTAAATAAAATAAAATAGTTAATTACCACATGTTTAATTTTAGCCTACATTTGAATCATATTCGATTGTATATTTTTCTCTTAACCTATAGTTTTAATGTGCATCCAATGCGCATTAAATTTAACCTATAGTTTTAATATGAATCAAATTCAAATTTAATTAATATTTGAACTCTTTCAACTATTTAATTCTCTCATAAATTAATTTTGAATCACATCCAAAATTAATTTTATATTATAAAGTTTAATTAAATATATAAACTTTATATTATAATGCATCACTATACATTATATTAACTTTGTGAATTTGAACATTTCAAATTCCATTCAAGACTAATGTACTAGATTACTCATTATGAGCTAGCAGTGGGATCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGATTAATTGGCTAAACTCATTACCCACATTAATCAACATTCATTAGTTGTGGGTACACTCCACTAAAGACTCATAGTTGCACTATTCTCACTATAGATTATTTCTGTGTCATGGATATAGACCCACAACTGCACTCTTCTCACTGTAGTTAGTCATTCACGAGTGTTCGTAACACTAGCTGGGTCAAATTACCATTTTACCCCTAGGTTACTTCTATGTCCTTATTTACTAGTGCTACTCTAATGAACAACCTGTTTAAGGTCCAACCATTAAACAGAAGTCCCTCTCAGGCCAATGAGAGGGTAGAGCCCTTTGCTCAAGTCCTGGAAACACCACTCAAGGGAACACTCATCTACTTTCCCTAAAGTCGGGAAGGGGTGAGTTTCTTCTTGTGACATTATGTTCCCAGCTCCTCACTCAGTCTTTGTCCCCAAAATGGTAGGCATATTGAGTCAGCGATTTGGCCACTCTCACCAATGCAAATCAAAGGGCAATCCCTCGTGGACAGAAGTCCACAATACACTCAGGATTAAGACTAAGTTGCCTGGGTCATCCTATTCAAATAGAAACCTAATTAGTCAACAGAGTTATATCTAACGGTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCATCTACACGAACGTGTTGGATCACTGCATTTGTATCAAATACAAAGTGGGTCGTATCCATAGTGTCATAAGGATAAGATACCCAGCCTTATCCCTATACTATAGATCTTTTGGGCTATTTTTTGAACATTGATCCCAGTATGTCCCTCCATACAGTTCAAGATACATAATAGAACCTAGGATGTTAGTTTATTGGATTTAGGGTTATTAATGCAAAACTAATATAACAAAATTCATCAACCCTTTATTGAATAAACTCAATAACATATTATTAATTAAATCAAAATGTTTACATTTACTATCTATGAGTTTTAGGGCATAAAACCCAACATTTACAAGAGCGGAAATTGTGATCTTGAAGCGAAAGATCAAGTAGAGAGATCGGTGACCTAAGAGCATGGAAACCAAAAAGGGTCGGTGACCTGAGAGCAAGGTAGAGTTTCTTTTTTTTTTTTTGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTAACACTTTGGTCCCTGAGTTTTAAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGCAGCATTTTGGTCCCTGCCGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTGACCTAAGATCAAGTAGAGATAAGCAGCAAATTGTGATCTTGAAGCGAAAGATCAAGTAGAGAGATCGGTGACCTAAGAGCATGGAAACCAAAAAGGGTCGGTGACCTGAGAGCAAGGTAGAGTTTCTTTTTTTTTTTGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTAACACTTTGGTCCCTGAGTTTTAAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGCAGCATTTTGGTCCCTGCCGTCCAGTTTGCCCTTAAATGCTGACAGATTGCTGACGTGGCCACATTTTTTTAATTTAAAAAATTATTTTTCTTATTTTTCTTATTTTTAAAATAAAAATAAATAAAAACAATAAAATATTATTATTTTAATTAATTTTTAATCTCTTTCTTCTTCCCCCTTCTTCATCCCTTCCCTCAACCCTTTCTTCATCTTCTTCAAATATCCAGTTGCCGGCACTGGCGGCCGGCCACCGCTTGCCGCCGCCGGCGACTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTATTTTCTTCTCTTTTCTTCTTCTCTCTTTTTCTTTTTTTTTTTTTATAAAAAATATAGGACCCTGTTTCCTGCGCGAGGACCAAACAATAATTTTAAAGTTATAAGAGGCGTGTTTATAATTTGATTAAATTTCAAATAATTTAGATTAAAAAGAAAAAGAGAATTCGTCACTGTCATTAAGATTTTTCACAAGATATATTTGTATGGAAGTGGAGTGAAATGATGAAAAAGGGCCTGAGAGAGAGAGCCGCAGATCTGCAAGCTCATCCCCCATTTTCGATTGGGATCAGGATATTCTCCCGCTACCGGCCAAAGGGCCAATTGAGCTGAAGAAAAAGCTTCAATTCCACTTCACTTTGCAGCCGCCGATTGAAATTTTTTGGATTAGGGTTTTTCTGGGATCTTCACCGGCGACGAGAAATGGTTTGTTCCAACTCCACAACTGGGGAGACCGTCCCCTGTGA

mRNA sequence

ATGAAGACAATAGGTCGAAAATGGACAATGAAAGTTCTCGAAGCTTCTGTGATTTTGGAGAAACTCAAAAGGATTTGTGATACCTGTGTGCAAAACCAAATCCCTCTTGAGGTAGAATTAGACGTTCTATCGATTGTGAGGGCTCTGAACAGCGAAGACATCGATCTCATGGAGGTGAAGTCGATCACTAAAGTCATCGCATTTGTTGCCTCTGGGTTCAAGGAGATTATCTTCAGCCATTGTAGGAGAGATTCGAACACAGTAGCCCACTGTGTCGCCAGACTTGCTTGTAACCCGAGCGCCCCAGACTACCCAACCCAAACCGAAAGGGATATTCTCCCGCTACCGGCCAAAGGGCCAATTGAGCTGAAGAAAAAGCTTCAATTCCACTTCACTTTGCAGCCGCCGATTGAAATTTTTTGGATTAGGGTTTTTCTGGGATCTTCACCGGCGACGAGAAATGGTTTGTTCCAACTCCACAACTGGGGAGACCGTCCCCTGTGA

Coding sequence (CDS)

ATGAAGACAATAGGTCGAAAATGGACAATGAAAGTTCTCGAAGCTTCTGTGATTTTGGAGAAACTCAAAAGGATTTGTGATACCTGTGTGCAAAACCAAATCCCTCTTGAGGTAGAATTAGACGTTCTATCGATTGTGAGGGCTCTGAACAGCGAAGACATCGATCTCATGGAGGTGAAGTCGATCACTAAAGTCATCGCATTTGTTGCCTCTGGGTTCAAGGAGATTATCTTCAGCCATTGTAGGAGAGATTCGAACACAGTAGCCCACTGTGTCGCCAGACTTGCTTGTAACCCGAGCGCCCCAGACTACCCAACCCAAACCGAAAGGGATATTCTCCCGCTACCGGCCAAAGGGCCAATTGAGCTGAAGAAAAAGCTTCAATTCCACTTCACTTTGCAGCCGCCGATTGAAATTTTTTGGATTAGGGTTTTTCTGGGATCTTCACCGGCGACGAGAAATGGTTTGTTCCAACTCCACAACTGGGGAGACCGTCCCCTGTGA

Protein sequence

MKTIGRKWTMKVLEASVILEKLKRICDTCVQNQIPLEVELDVLSIVRALNSEDIDLMEVKSITKVIAFVASGFKEIIFSHCRRDSNTVAHCVARLACNPSAPDYPTQTERDILPLPAKGPIELKKKLQFHFTLQPPIEIFWIRVFLGSSPATRNGLFQLHNWGDRPL
Homology
The following BLAST results are available for this feature:
BLAST of Lcy07g008250 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g008250 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g008250 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g008250 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 35..96
e-value: 7.2E-8
score: 32.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g008250.1Lcy07g008250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity