Lcy07g006800 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g006800
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	MuDRA-like transposase
Location	Chr07: 33294763 .. 33296018 (+)
RNA-Seq Expression	Lcy07g006800
Synteny	Lcy07g006800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCCAGCCGGGATTTCTTGGTTGAGAAACCGACCAAGAAATTTTCCAGGTTTTGTTTTTTCCTTTCTTCCTTTGATTTTTCTTTCCTTCTTTTGCAAAAATTATTTTTTTTAATGAATCTTGTATATATATATATATATATTGCAGAATACCTCGAATCTTTGTGTGTTACGGTGGTGTCTGGAAGGAGAATGAAAGAGATTATGAAGGTGGCTATTTAGTAGGATTGGATGTGAATATTGACATAAGGTATGAAGAGTTTTTAAGAGAGCTGTATAACCTAAGTGGCATTAACCCTGATCAGTTTGACCTTATAATAAGATGTCTATACAATTTTGGATCGAGGGTTCCTACTTATTTGATTAGAAATGACAGAGAATTAAGATTCTTTCTAAGCGGAGAGGATGCATCTCAATTGTAGTTATACTTATCAATGATTCCAAAAGTTGTCCATGGTAGTGGCAGAAACTTAGGTAGTCATAGCCATATACCACACACGATCTCACAACCGCCACCATCATTTGCATAGACTGGACCCTACAATTTGGCCGAAAACATATCATCATCCATTCCCTCGTATCATCCGACATATGATAACGTATCATCACCAATCTCTATAAGTAATACTTTTGTCCCACTAGACTTAGTCGATGATAGTACACCAAATTTTGGGATTGAAGAGAATTTTTATATTGGTGATGATACACTTATTTACGAGGAAGAAGAGTATGATGAAGAGGAAGATGAAAACTGGGAATACAACGAGGAGGATGAAGAATTAGATGAATCATACGAAGAATCTGAAGTAGATGAATTTGAGGAAGTAGATGATTATGATGATGACGTTGCAGGAGATGGAGTTGAGGAAGATGGTGGGATAGATGGAGGTAATGAAGTCGAGGAAGATGTTGCTCCTCTTGCTTCTAGAATGGAAGGTGCTTCTAGCCAGCAATTGATCACATCAGGTCAGTGTTCATATTCTAGTGGTGATGTTGAACTTGGACAACTATATGATTGTAAGGAAGAATTGAAAACGAGGTTGTCTGTAATGGCCATGCGGAAAAATTTTGAGTTTAGGGTTAAGAAATCCATGAAGTCTTTGTTCGTGGTGAAATGTATAATCGAATCTTGCAAATGGAAAGTTAGAGCTATAAAATCGAAGGGTTATGACGTACTCAAGATTTCGAAATATTATAATGCCCACAGTGGCGGATCCAGAACTTCATGTGAGGGGGGGCTATATATAAAATAA

mRNA sequence

ATGAATCCCAGCCGGGATTTCTTGGTTGAGAAACCGACCAAGAAATTTTCCAGAATACCTCGAATCTTTGTGTGTTACGGTGGTGTCTGGAAGGAGAATGAAAGAGATTATGAAGGTGGCTATTTAGTAGGATTGGATGTGAATATTGACATAAGTACACCAAATTTTGGGATTGAAGAGAATTTTTATATTGGTGATGATACACTTATTTACGAGGAAGAAGAGTATGATGAAGAGGAAGATGAAAACTGGGAATACAACGAGGAGGATGAAGAATTAGATGAATCATACGAAGAATCTGAAGTAGATGAATTTGAGGAAGTAGATGATTATGATGATGACGTTGCAGGAGATGGAGTTGAGGAAGATGGTGGGATAGATGGAGGTAATGAAGTCGAGGAAGATGTTGCTCCTCTTGCTTCTAGAATGGAAGGTGCTTCTAGCCAGCAATTGATCACATCAGGTCAGTGTTCATATTCTAGTGGTGATGTTGAACTTGGACAACTATATGATTGTAAGGAAGAATTGAAAACGAGGTTGTCTGTAATGGCCATGCGGAAAAATTTTGAGTTTAGGGTTAAGAAATCCATGAAGTCTTTGTTCGTGGTGAAATGTATAATCGAATCTTGCAAATGGAAAGTTAGAGCTATAAAATCGAAGGGTTATGACGTACTCAAGATTTCGAAATATTATAATGCCCACAGTGGCGGATCCAGAACTTCATGTGAGGGGGGGCTATATATAAAATAA

Coding sequence (CDS)

ATGAATCCCAGCCGGGATTTCTTGGTTGAGAAACCGACCAAGAAATTTTCCAGAATACCTCGAATCTTTGTGTGTTACGGTGGTGTCTGGAAGGAGAATGAAAGAGATTATGAAGGTGGCTATTTAGTAGGATTGGATGTGAATATTGACATAAGTACACCAAATTTTGGGATTGAAGAGAATTTTTATATTGGTGATGATACACTTATTTACGAGGAAGAAGAGTATGATGAAGAGGAAGATGAAAACTGGGAATACAACGAGGAGGATGAAGAATTAGATGAATCATACGAAGAATCTGAAGTAGATGAATTTGAGGAAGTAGATGATTATGATGATGACGTTGCAGGAGATGGAGTTGAGGAAGATGGTGGGATAGATGGAGGTAATGAAGTCGAGGAAGATGTTGCTCCTCTTGCTTCTAGAATGGAAGGTGCTTCTAGCCAGCAATTGATCACATCAGGTCAGTGTTCATATTCTAGTGGTGATGTTGAACTTGGACAACTATATGATTGTAAGGAAGAATTGAAAACGAGGTTGTCTGTAATGGCCATGCGGAAAAATTTTGAGTTTAGGGTTAAGAAATCCATGAAGTCTTTGTTCGTGGTGAAATGTATAATCGAATCTTGCAAATGGAAAGTTAGAGCTATAAAATCGAAGGGTTATGACGTACTCAAGATTTCGAAATATTATAATGCCCACAGTGGCGGATCCAGAACTTCATGTGAGGGGGGGCTATATATAAAATAA

Protein sequence

MNPSRDFLVEKPTKKFSRIPRIFVCYGGVWKENERDYEGGYLVGLDVNIDISTPNFGIEENFYIGDDTLIYEEEEYDEEEDENWEYNEEDEELDESYEESEVDEFEEVDDYDDDVAGDGVEEDGGIDGGNEVEEDVAPLASRMEGASSQQLITSGQCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCIIESCKWKVRAIKSKGYDVLKISKYYNAHSGGSRTSCEGGLYIK

Homology

[Close]

BLAST of Lcy07g006800 vs. ExPASy TrEMBL
Match: A0A5A7V528 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00310 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 146 ASSQQLITSG----QCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLF 205
           +SSQ+L T G    + S +S ++++GQ++ CK +L  RLSV+AM KNF+F VKKS K +F
Sbjct: 288 SSSQKLKTKGSGWSEESSTSEELDVGQIFFCKRDLSMRLSVLAMNKNFQFVVKKSTKEVF 347

Query: 206 VVKCIIESCKWKVRAIKSKGYDVLKISKYYNAHS 236
            V+CI + C W++RA++ K  ++ KI KY   HS
Sbjct: 348 FVRCIDKKCGWRLRAVRLKDSNIFKIKKYVKVHS 381

[Close]

BLAST of Lcy07g006800 vs. ExPASy TrEMBL
Match: A0A6J1DSY0 (uncharacterized protein LOC111023635 OS=Momordica charantia OX=3673 GN=LOC111023635 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 87/260 (33.46%), Postives = 121/260 (46.54%), Query Frame = 0


Query: 21  RIFVCYGGVWKENERDYEGGYLVGLDVNIDISTPNFGIEENFYIGDD------------T 80
           R+FV YGG W E    YEGG + GLDV+  I+  N     +     D             
Sbjct: 3   RLFVIYGGKWNEAGTVYEGGXMGGLDVDETITYANLVSALHMLTRIDLDQFDLIVQCVYD 62

Query: 81  LIYEEEEYDE-------EEDENWEYNEEDEELDESYEESEVDEFEEVDDYDDDVAGDGVE 140
           LI+E     +       ++DEN + N +  E +  YE    DE+    DYD+    DGVE
Sbjct: 63  LIFEITPLADNVISCNLDDDENDDGNGQLYENEVEYEFQSDDEY----DYDEYRTEDGVE 122

Query: 141 EDG--GIDGGNEVE---EDVAPLASRMEGASSQQLIT-SGQCSYSS-------------- 200
           +DG  G D G E E   EDV       EG    +  T SG   Y +              
Sbjct: 123 DDGGNGYDNGEEDEYHTEDVLDEHYENEGQHVHESHTVSGNAPYQTVEEVVXRPMQNIIT 182

Query: 201 -------GDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCIIESCKWKV 235
                  G++ +  ++  KEEL+ +LSV+AM+ NF+F+VKKS K+LF V C  + CKW +
Sbjct: 183 GNGSDFIGEIAVKGIFRSKEELRFKLSVLAMKLNFKFKVKKSTKTLFTVGCTEQGCKWGL 242

[Close]

BLAST of Lcy07g006800 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 80/263 (30.42%), Postives = 124/263 (47.15%), Query Frame = 0


Query: 21  RIFVCYGGVWKENERDYEGGYLVGLDVNIDIS---------------------------- 80
           RIFV YGGVW + + +Y+GG L G+ V  +I+                            
Sbjct: 5   RIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIKCIYE 64

Query: 81  ------TPNFGIEE----NFYI-GDDT------LIYEEEEYDEEEDENWEYNEE--DEEL 140
                 TP F I      NFY+ G+DT      + +E    D  E E+   N      + 
Sbjct: 65  IKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPRSRDLTEVESQSQNNSMMSHKE 124

Query: 141 DESYE-ESEVDEFEEVDDYDDDVAGDGVEEDGGIDGGNEVEEDVAPLASRMEGASSQQLI 200
           D S E  + VD    V+   D V          +D   +++ +    +   +    + + 
Sbjct: 125 DISRERNANVDCEAPVEPECDHVP--------KVDRKRKLKVNYESDSVGQKKYMKKNVW 184

Query: 201 TSGQCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCIIESCKW 236
           + G  S ++ + ++GQ++  K +L  +LSVMAM++NFEFRVKKS K L  + C+ E+CKW
Sbjct: 185 SEG--SSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKSTKELIYIVCVDENCKW 244

[Close]

BLAST of Lcy07g006800 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 80/263 (30.42%), Postives = 124/263 (47.15%), Query Frame = 0


Query: 21  RIFVCYGGVWKENERDYEGGYLVGLDVNIDIS---------------------------- 80
           RIFV YGGVW + + +Y+GG L G+ V  +I+                            
Sbjct: 5   RIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIKCIYE 64

Query: 81  ------TPNFGIEE----NFYI-GDDT------LIYEEEEYDEEEDENWEYNEE--DEEL 140
                 TP F I      NFY+ G+DT      + +E    D  E E+   N      + 
Sbjct: 65  IKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPRSRDLTEVESQSQNNSMMSHKE 124

Query: 141 DESYE-ESEVDEFEEVDDYDDDVAGDGVEEDGGIDGGNEVEEDVAPLASRMEGASSQQLI 200
           D S E  + VD    V+   D V          +D   +++ +    +   +    + + 
Sbjct: 125 DISRERNANVDCEAPVEPECDHVP--------KVDRKRKLKVNYESDSVGQKKYMKKNVW 184

Query: 201 TSGQCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCIIESCKW 236
           + G  S ++ + ++GQ++  K +L  +LSVMAM++NFEFRVKKS K L  + C+ E+CKW
Sbjct: 185 SEG--SSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKSTKELIYIVCVDENCKW 244

[Close]

BLAST of Lcy07g006800 vs. ExPASy TrEMBL
Match: A0A6J1HH03 (uncharacterized protein LOC111463467 OS=Cucurbita moschata OX=3662 GN=LOC111463467 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-09
Identity = 31/76 (40.79%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 160 SSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCIIESCKWKVRAIKS 219
           S+  + +GQ Y  K++++++LS+MA+R+NFEF+V++S + L  V C+ + CKW+VRA K 
Sbjct: 270 SNDTIAVGQSYPSKKDVQSKLSLMAIRENFEFKVRRSTRDLLFVICVDKGCKWRVRASKM 329

Query: 220 KGYDVLKISKYYNAHS 236
              D   I K++N H+
Sbjct: 330 NDSDCFLIRKFHNVHT 345

[Close]

BLAST of Lcy07g006800 vs. NCBI nr
Match: XP_038889297.1 (uncharacterized protein LOC120079207 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 147 SSQQLITSGQCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCI 206
           SS  +   GQ SYSS DV++G ++  K++LK RLS++A+R NF+FR+KKS  +L+ V C+
Sbjct: 39  SSSTITMPGQ-SYSSEDVQIGDIFLSKKDLKMRLSMLAIRGNFQFRLKKSTTTLYKVICL 98

Query: 207 IESCKWKVRAIKSKGYDVLKISKYYNAHS 236
           +E CKW++RA+K K  ++ KI KY N H+
Sbjct: 99  VEECKWRIRAVKLKICEIFKIFKYDNVHT 126

[Close]

BLAST of Lcy07g006800 vs. NCBI nr
Match: KAA0060809.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-13
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 146 ASSQQLITSG----QCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLF 205
           +SSQ+L T G    + S +S ++++GQ++ CK +L  RLSV+AM KNF+F VKKS K +F
Sbjct: 288 SSSQKLKTKGSGWSEESSTSEELDVGQIFFCKRDLSMRLSVLAMNKNFQFVVKKSTKEVF 347

Query: 206 VVKCIIESCKWKVRAIKSKGYDVLKISKYYNAHS 236
            V+CI + C W++RA++ K  ++ KI KY   HS
Sbjct: 348 FVRCIDKKCGWRLRAVRLKDSNIFKIKKYVKVHS 381

[Close]

BLAST of Lcy07g006800 vs. NCBI nr
Match: XP_038902336.1 (uncharacterized protein LOC120088970 [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-13
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 143 MEGASSQQLITSGQCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFV 202
           M      +LI  G  S S  DVE+ Q++  K +LK RLS++ +  NFE++V+KS KSLF 
Sbjct: 25  MSSCHRGKLIMPGTSS-SETDVEVDQIFLSKSDLKMRLSILCINNNFEYKVRKSTKSLFT 84

Query: 203 VKCIIESCKWKVRAIKSKGYDVLKISKYYNAHS 236
           VKCI ++CKW +RA+K  G D+ KI KY  +H+
Sbjct: 85  VKCIEDNCKWSLRAVKISGCDIFKIMKYMRSHT 116

[Close]

BLAST of Lcy07g006800 vs. NCBI nr
Match: XP_038902318.1 (uncharacterized protein LOC120088954 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-11
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 143 MEGASSQQLITSGQCSYSSGDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFV 202
           M      +LI SG  S S  DVE+GQ++  K +LK RLS++ +  NFE++V+KS KSLF 
Sbjct: 90  MSSCRKGELIMSGTSS-SETDVEVGQIFLSKIDLKMRLSILYIINNFEYKVRKSTKSLFT 149

Query: 203 VKCIIESCKWKVRAIKSKGYDVLKISKYYNAHS 236
           VKCI ++CKW + A+K    D+ KI+K+  +H+
Sbjct: 150 VKCIEDNCKWILHAVKIPECDIFKITKHIRSHT 181

[Close]

BLAST of Lcy07g006800 vs. NCBI nr
Match: XP_022156802.1 (uncharacterized protein LOC111023635 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-11
Identity = 87/260 (33.46%), Postives = 121/260 (46.54%), Query Frame = 0


Query: 21  RIFVCYGGVWKENERDYEGGYLVGLDVNIDISTPNFGIEENFYIGDD------------T 80
           R+FV YGG W E    YEGG + GLDV+  I+  N     +     D             
Sbjct: 3   RLFVIYGGKWNEAGTVYEGGXMGGLDVDETITYANLVSALHMLTRIDLDQFDLIVQCVYD 62

Query: 81  LIYEEEEYDE-------EEDENWEYNEEDEELDESYEESEVDEFEEVDDYDDDVAGDGVE 140
           LI+E     +       ++DEN + N +  E +  YE    DE+    DYD+    DGVE
Sbjct: 63  LIFEITPLADNVISCNLDDDENDDGNGQLYENEVEYEFQSDDEY----DYDEYRTEDGVE 122

Query: 141 EDG--GIDGGNEVE---EDVAPLASRMEGASSQQLIT-SGQCSYSS-------------- 200
           +DG  G D G E E   EDV       EG    +  T SG   Y +              
Sbjct: 123 DDGGNGYDNGEEDEYHTEDVLDEHYENEGQHVHESHTVSGNAPYQTVEEVVXRPMQNIIT 182

Query: 201 -------GDVELGQLYDCKEELKTRLSVMAMRKNFEFRVKKSMKSLFVVKCIIESCKWKV 235
                  G++ +  ++  KEEL+ +LSV+AM+ NF+F+VKKS K+LF V C  + CKW +
Sbjct: 183 GNGSDFIGEIAVKGIFRSKEELRFKLSVLAMKLNFKFKVKKSTKTLFTVGCTEQGCKWGL 242

The following BLAST results are available for this feature:

BLAST of Lcy07g006800 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g006800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V528	3.4e-13	45.74	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]
A0A6J1DSY0	1.4e-11	33.46	uncharacterized protein LOC111023635 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DPC2	6.0e-10	30.42	uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRN0	6.0e-10	30.42	uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HH03	6.7e-09	40.79	uncharacterized protein LOC111463467 OS=Cucurbita moschata OX=3662 GN=LOC1114634...	[more]

BLAST of Lcy07g006800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889297.1	1.1e-13	48.31	uncharacterized protein LOC120079207 [Benincasa hispida]	[more]
KAA0060809.1	7.1e-13	45.74	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
XP_038902336.1	7.1e-13	46.24	uncharacterized protein LOC120088970 [Benincasa hispida]	[more]
XP_038902318.1	3.0e-11	45.16	uncharacterized protein LOC120088954 [Benincasa hispida]	[more]
XP_022156802.1	3.0e-11	33.46	uncharacterized protein LOC111023635 [Momordica charantia]	[more]

BLAST of Lcy07g006800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..105
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 165..226 e-value: 7.6E-13 score: 48.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g006800.1	Lcy07g006800.1	mRNA