Lcy07g006590 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g006590
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase
LocationChr07: 32975213 .. 32975633 (-)
RNA-Seq ExpressionLcy07g006590
SyntenyLcy07g006590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTAATGGTCGAAGTGGTGGACTTTGTTTACTATGGAAGGAGGAAATGAATGTCACAATTAGATCGTTTTCGCAATTTCATATTGATGCATCTGTTCTATGGGATCCTGGTTTATATGGGAATCCGAATACAAATCAAAGGAAATTTACTTGGGATCTCATCTGCATATTGCATAATCAGGACGAATCTGCCTGGATCATTGGGGGGGATTTCAATGCTACTTTATCATATGAGGAAAAAGAAGGTGGTGCGCCCACCAGAGAGTCCCAAATGGATATGTTTCGGAATGTATTGGATGAATGTGAGCTGCAGGATCTTGACTATCTGAGTGAAATGTATACTTGGTCAAATAGGCATATGTGTGAAGTGCAAATCAATGAATGACTTGATCGGTTCGTTGCTAATGAGGCATTTT

mRNA sequence

ATGGATTGTAATGGTCGAAGTGGTGGACTTTGTTTACTATGGAAGGAGGAAATGAATGTCACAATTAGATCGTTTTCGCAATTTCATATTGATGCATCTGTTCTATGGGATCCTGGTTTATATGGGAATCCGAATACAAATCAAAGGAAATTTACTTGGGATCTCATCTGCATATTGCATAATCAGGACGAATCTGCCTGGATCATTGGGGGGGATTTCAATGCTACTTTATCATATGAGGAAAAAGAAGGTGGTGCGCCCACCAGAGAGTCCCAAATGGATATGTTTCGGAATGTATTGGATGAATGTGAGCTGCAGGATCTTGACTATCTGAGTGAAATGTATACTTGGTCAAATAGGCATATGTGTGAAGTGCAAATCAATGAATGACTTGATCGGTTCGTTGCTAATGAGGCATTTT

Coding sequence (CDS)

ATGGATTGTAATGGTCGAAGTGGTGGACTTTGTTTACTATGGAAGGAGGAAATGAATGTCACAATTAGATCGTTTTCGCAATTTCATATTGATGCATCTGTTCTATGGGATCCTGGTTTATATGGGAATCCGAATACAAATCAAAGGAAATTTACTTGGGATCTCATCTGCATATTGCATAATCAGGACGAATCTGCCTGGATCATTGGGGGGGATTTCAATGCTACTTTATCATATGAGGAAAAAGAAGGTGGTGCGCCCACCAGAGAGTCCCAAATGGATATGTTTCGGAATGTATTGGATGAATGTGAGCTGCAGGATCTTGACTATCTGAGTGAAATGTATACTTGGTCAAATAGGCATATGTGTGAAGTGCAAATCAATGAATGA

Protein sequence

MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASVLWDPGLYGNPNTNQRKFTWDLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSEMYTWSNRHMCEVQINE
Homology
BLAST of Lcy07g006590 vs. ExPASy TrEMBL
Match: A0A2N9J7Z5 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60373 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 0

Query: 5   GRSGGLCLLWKEEMNVTIRSFSQFHIDASV------LWD-PGLYGNPNTNQRKFTWDLIC 64
           GR GGLCL W++E+N++IRSFS  HIDA +       W   G YG P+ N R+ +W+L+ 
Sbjct: 187 GRGGGLCLFWQDEVNISIRSFSPSHIDAIINNGDNNCWRFTGFYGAPDHNHREESWNLLR 246

Query: 65  ILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSEMYTW 123
            L++Q    W+  GDFN      EK+G  P  E QM++FR  LDECEL DL Y    YTW
Sbjct: 247 TLNHQYHLPWLCAGDFNEITKNIEKQGRLPRPEKQMELFREALDECELMDLGYRGAPYTW 306

BLAST of Lcy07g006590 vs. ExPASy TrEMBL
Match: A0A2N9G656 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22762 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 0

Query: 5   GRSGGLCLLWKEEMNVTIRSFSQFHIDASV------LWD-PGLYGNPNTNQRKFTWDLIC 64
           GR GGLCL W++E+N++IRSFS  HIDA +       W   G YG P+ N R+ +W+L+ 
Sbjct: 369 GRGGGLCLFWQDEVNISIRSFSPSHIDAIINNGDNNCWRFTGFYGAPDHNHREESWNLLR 428

Query: 65  ILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSEMYTW 123
            L++Q    W+  GDFN      EK+G  P  E QM++FR  LDECEL DL Y    YTW
Sbjct: 429 TLNHQYHLPWLCAGDFNEITKNIEKQGRLPRPEKQMELFREALDECELMDLGYRGAPYTW 488

BLAST of Lcy07g006590 vs. ExPASy TrEMBL
Match: A0A1R3FXZ5 (Endonuclease/exonuclease/phosphatase OS=Corchorus capsularis OX=210143 GN=CCACVL1_30309 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.9e-23
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASV------LWD-PGLYGNPNTNQRKFTW 60
           ++C GR+G L LLW  ++++ I S+S  HIDA++       W   G YG+P TN  + +W
Sbjct: 521 VECVGRAGDLALLWSNDISIHILSYSNSHIDAAIDNNSLNPWRFTGFYGSPQTNHLRNSW 580

Query: 61  DLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSE 120
           +L+ +LH+Q    W+  GDFN  +S EEK GGA   E QM +FR+++++CEL DL  L  
Sbjct: 581 NLLRLLHSQFSLPWLCAGDFNEIISNEEKHGGAWRLEHQMRLFRDIIEDCELNDLPVLGP 640

BLAST of Lcy07g006590 vs. ExPASy TrEMBL
Match: A0A5B6UWI4 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_028665 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.2e-23
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASV-------LWD-PGLYGNPNTNQRKFT 60
           +D  G  GGL L WKE  +++++SFS+ HIDA V        W   G YG+P  N R+ +
Sbjct: 16  VDPEGTKGGLSLAWKENTSISVQSFSRRHIDAIVEDQNTDQKWRFTGFYGSPYANDREES 75

Query: 61  WDLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLS 120
           W L+  LH+ DE +W + GDFN  L   EK+GG P  E +M+ FRN L EC+L D+ +  
Sbjct: 76  WQLLKSLHSVDEQSWFVCGDFNEILYGFEKKGGLPREEKRMEDFRNTLQECQLFDIGFSG 135

Query: 121 EMYTWSNRHMCEVQINE 130
             +TW   ++ E  I E
Sbjct: 136 RWFTWERGNLPETNIRE 152

BLAST of Lcy07g006590 vs. ExPASy TrEMBL
Match: A0A5B6UCE5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_018717 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.2e-23
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASVLWD--------PGLYGNPNTNQRKFT 60
           M   G  GGLCL WK  + VT+RSFS +HID  V  D         G YG+P    +   
Sbjct: 29  MAAEGSRGGLCLAWKGWIEVTLRSFSNWHIDVLVKEDNAQEEWRFTGFYGSPYLKDKNVA 88

Query: 61  WDLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLS 120
           W+L+  L  +    W++ GDFN  L Y EK GG P  + +M+ FR+VLDEC+L DL Y  
Sbjct: 89  WNLLKRLGQECSYPWLVAGDFNEILYYFEKSGGVPRHQRRMEAFRDVLDECQLIDLGYSG 148

Query: 121 EMYTWSNRHMCEVQINE 130
             +TW   ++ E  I E
Sbjct: 149 SWFTWERGNLPETNIRE 165

BLAST of Lcy07g006590 vs. NCBI nr
Match: XP_042973125.1 (uncharacterized protein LOC122304929 [Carya illinoinensis])

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASV-------LWD-PGLYGNPNTNQRKFT 60
           +DC GRSGGL LLW++E+ +TIRSFS+ HIDA V        W   GLYG+P TN+R+ T
Sbjct: 59  IDCEGRSGGLSLLWRQEVELTIRSFSKHHIDAEVKDSDSEGCWQVTGLYGHPETNRREET 118

Query: 61  WDLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLS 120
           WDL+  L       W++ GDFN   S  EK+GG    E QM+ FR ++D+C L DLDY  
Sbjct: 119 WDLMRSLSRGAHERWLVMGDFNEITSRMEKKGGKDRAEFQMESFRRMIDDCTLVDLDYEG 178

BLAST of Lcy07g006590 vs. NCBI nr
Match: XP_042950313.1 (uncharacterized protein LOC122282426 [Carya illinoinensis])

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASVLWD-------PGLYGNPNTNQRKFTW 60
           +D  GRSGGL LLW  ++ V +RSFSQ+HID  +  D        GLYG+P+T++R FTW
Sbjct: 59  VDSEGRSGGLGLLWNSDLGVELRSFSQYHIDVHIKIDDLMVWRFTGLYGHPDTSRRTFTW 118

Query: 61  DLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSE 120
           +LI  L + ++  W++GGD N  L   EK GG     SQ++ FR VL ECEL+DL Y  +
Sbjct: 119 NLIRTLSSIEQLPWLVGGDLNEVLHPHEKRGGRDRPVSQIEAFREVLTECELRDLGYKGQ 178

BLAST of Lcy07g006590 vs. NCBI nr
Match: KAG6636592.1 (hypothetical protein CIPAW_11G121200 [Carya illinoinensis])

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASVLWD-------PGLYGNPNTNQRKFTW 60
           +D  GRSGGL LLW  ++ V +RSFSQ+HID  +  D        GLYG+P+T++R FTW
Sbjct: 16  VDSEGRSGGLGLLWNSDLGVELRSFSQYHIDVHIKIDDLMVWRFTGLYGHPDTSRRTFTW 75

Query: 61  DLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSE 120
           +LI  L + ++  W++GGD N  L   EK GG     SQ++ FR VL ECEL+DL Y  +
Sbjct: 76  NLIRTLSSIEQLPWLVGGDLNEVLHPHEKRGGRDRPVSQIEAFREVLTECELRDLGYKGQ 135

BLAST of Lcy07g006590 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASVL------WD-PGLYGNPNTNQRKFTW 60
           +DC GRSGGL LLWK ++ V ++SFS  HIDA +       W   G+YGNP    R  TW
Sbjct: 59  VDCVGRSGGLSLLWKGDLRVRVQSFSLHHIDALIQDGDGPEWRFTGVYGNPEVVNRYLTW 118

Query: 61  DLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLSE 120
           +L+  L++  +  W++GGDFN  L + EK GG P  E+QM+ FRNV+ +C L+DL +   
Sbjct: 119 NLLRRLNSGVDGPWLVGGDFNELLHFNEKRGGRPRSENQMEAFRNVIFDCSLRDLGFRGP 178

BLAST of Lcy07g006590 vs. NCBI nr
Match: KAG2685210.1 (hypothetical protein I3760_10G113500 [Carya illinoinensis])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-25
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 0

Query: 1   MDCNGRSGGLCLLWKEEMNVTIRSFSQFHIDASV-------LWD-PGLYGNPNTNQRKFT 60
           +DC GRSGGL LLWK+E+ +TIRSFS+ HIDA V        W    LYG+P TN+R+ T
Sbjct: 16  VDCEGRSGGLSLLWKQEVELTIRSFSKHHIDAEVKDSDNEGCWQVTDLYGHPETNRREET 75

Query: 61  WDLICILHNQDESAWIIGGDFNATLSYEEKEGGAPTRESQMDMFRNVLDECELQDLDYLS 120
           WDL+  L       W++ GDFN   S  EK+GG    E QM+ FR ++D+C L DL Y  
Sbjct: 76  WDLMRSLSRGAHERWLVMGDFNKITSRMEKKGGKDRAEFQMESFRRMIDDCTLVDLGYEG 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9J7Z51.3e-2445.60Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9G6561.3e-2445.60Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A1R3FXZ51.9e-2342.52Endonuclease/exonuclease/phosphatase OS=Corchorus capsularis OX=210143 GN=CCACVL... [more]
A0A5B6UWI44.2e-2340.88Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_028665 PE=4 SV=1[more]
A0A5B6UCE54.2e-2340.88Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_018717 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_042973125.19.9e-2748.82uncharacterized protein LOC122304929 [Carya illinoinensis][more]
XP_042950313.16.4e-2646.83uncharacterized protein LOC122282426 [Carya illinoinensis][more]
KAG6636592.16.4e-2646.83hypothetical protein CIPAW_11G121200 [Carya illinoinensis][more]
KAF5443558.11.4e-2546.03hypothetical protein F2P56_036105, partial [Juglans regia][more]
KAG2685210.11.9e-2548.03hypothetical protein I3760_10G113500 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..127
e-value: 7.4E-11
score: 44.2
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 3..122
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 15..121
NoneNo IPR availablePANTHERPTHR33710:SF35SUBFAMILY NOT NAMEDcoord: 15..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g006590.1Lcy07g006590.1mRNA