Lcy07g004410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g004410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposase
Location	Chr07: 21978842 .. 21979360 (+)
RNA-Seq Expression	Lcy07g004410
Synteny	Lcy07g004410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATCGTAGGCATACTTCTTGATGTTCCAGGGAAAAGTAAGGATGGATTGAATGCTAGACGTGATTTAGTCCACTTAAAGATTCGACCAGAGCTCGCACCTGTTAGTGGAGACAAAAAAATCTTCACTCCTCTTGCTTGTTATACTCTTACAAGGGAAGAAGAACGTTGTGTTTTAAAGGCGTTGTCAGAAATGAAGGTTCCTGAAGGTTACTCATCCAATATTAAAAATCTTGTGTCAATGGTAGATTTAAAACTTAATAGTTTGAAATCTCATGACTGTCATGTGCTCTTACAACAGTTGTTTCCCATTGCGATAAGATCTGTGTTACCAAAATATGTTTGATATGTCATAACTCGATTGTGTATTTTTTTTCAATTCATACAATTAGAAAAGTTGCAAGAAGATATCATGGTTACATTATGTTTATTGGATAAGTATTTTCCTCCTTCATTCTTCACAATTATGGTGCATCTCACGGTACACATTGTTAGAGAAGTCAAGCTTTGTGTGCCT

mRNA sequence

ATGAATATCGTAGGCATACTTCTTGATGTTCCAGGGAAAAGTAAGGATGGATTGAATGCTAGACGTGATTTAGTCCACTTAAAGATTCGACCAGAGCTCGCACCTGTTAGTGGAGACAAAAAAATCTTCACTCCTCTTGCTTGTTATACTCTTACAAGGGAAGAAGAACGTTGTGTTTTAAAGGCGTTGTCAGAAATGAAGGTTCCTGAAGAAAAGTTGCAAGAAGATATCATGGTTACATTATGTTTATTGGATAAGTATTTTCCTCCTTCATTCTTCACAATTATGGTGCATCTCACGGTACACATTGTTAGAGAAGTCAAGCTTTGTGTGCCT

Coding sequence (CDS)

ATGAATATCGTAGGCATACTTCTTGATGTTCCAGGGAAAAGTAAGGATGGATTGAATGCTAGACGTGATTTAGTCCACTTAAAGATTCGACCAGAGCTCGCACCTGTTAGTGGAGACAAAAAAATCTTCACTCCTCTTGCTTGTTATACTCTTACAAGGGAAGAAGAACGTTGTGTTTTAAAGGCGTTGTCAGAAATGAAGGTTCCTGAAGAAAAGTTGCAAGAAGATATCATGGTTACATTATGTTTATTGGATAAGTATTTTCCTCCTTCATTCTTCACAATTATGGTGCATCTCACGGTACACATTGTTAGAGAAGTCAAGCTTTGTGTGCCT

Protein sequence

MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVLKALSEMKVPEEKLQEDIMVTLCLLDKYFPPSFFTIMVHLTVHIVREVKLCVP

Homology

[Close]

BLAST of Lcy07g004410 vs. ExPASy TrEMBL
Match: A0A5A7UY50 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001070 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 439 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 498

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 499 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 558

[Close]

BLAST of Lcy07g004410 vs. ExPASy TrEMBL
Match: A0A5D3DN97 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00570 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 439 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 498

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 499 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 558

[Close]

BLAST of Lcy07g004410 vs. ExPASy TrEMBL
Match: A0A5D3CA82 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00610 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 584 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 643

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 644 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 703

[Close]

BLAST of Lcy07g004410 vs. ExPASy TrEMBL
Match: A0A5D3DLB9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001120 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 360 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 419

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 420 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 479

[Close]

BLAST of Lcy07g004410 vs. ExPASy TrEMBL
Match: A0A5A7TE86 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00390 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 392 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 451

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 452 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 511

[Close]

BLAST of Lcy07g004410 vs. NCBI nr
Match: XP_031737548.1 (uncharacterized protein LOC116402438 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 90/181 (49.72%), Postives = 105/181 (58.01%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP++ +KKIF PLACYTLT++E+RCVL
Sbjct: 350 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPINSEKKIFIPLACYTLTKDEKRCVL 409

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LSE+KVPE                                                  
Sbjct: 410 KTLSEIKVPEGYSSNIRNLGSITDLKLNSLKSHDCHVLIQQLFLIVIRSVLPKHVRYAIT 469

[Close]

BLAST of Lcy07g004410 vs. NCBI nr
Match: XP_031741711.1 (uncharacterized protein LOC116403906 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 90/181 (49.72%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT++E+RCVL
Sbjct: 192 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKDEKRCVL 251

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LSE+KVPE                                                  
Sbjct: 252 KTLSEIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 311

[Close]

BLAST of Lcy07g004410 vs. NCBI nr
Match: KAA0060812.1 (transposase [Cucumis melo var. makuwa] >TYK07546.1 transposase [Cucumis melo var. makuwa] >TYK29001.1 transposase [Cucumis melo var. makuwa] >TYK29040.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 439 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 498

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 499 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 558

[Close]

BLAST of Lcy07g004410 vs. NCBI nr
Match: TYK30264.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 390 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 449

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 450 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 509

[Close]

BLAST of Lcy07g004410 vs. NCBI nr
Match: TYK08445.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-36
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MNIVGILLDVPGKSKDGLNARRDLVHLKIRPELAPVSGDKKIFTPLACYTLTREEERCVL 60
           MNI+G LLD+PGKSKDGLNARRDLV LK+RPELAP+S +KKIF P ACYTLT+EE+RCVL
Sbjct: 584 MNILGTLLDIPGKSKDGLNARRDLVDLKLRPELAPISSEKKIFIPPACYTLTKEEKRCVL 643

Query: 61  KALSEMKVPE-------------------------------------------------- 113
           K LS +KVPE                                                  
Sbjct: 644 KTLSRIKVPEGYSSNIRNLVSMTDLKLNSLKSHDCHVLIQQLFPIAIRSVLPKHVRYAIT 703

The following BLAST results are available for this feature:

BLAST of Lcy07g004410 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g004410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY50	3.8e-36	49.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001070 P...	[more]
A0A5D3DN97	3.8e-36	49.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00570 P...	[more]
A0A5D3CA82	3.8e-36	49.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00610 PE...	[more]
A0A5D3DLB9	3.8e-36	49.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001120 P...	[more]
A0A5A7TE86	3.8e-36	49.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00390 PE=4...	[more]

BLAST of Lcy07g004410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737548.1	1.6e-36	49.72	uncharacterized protein LOC116402438 [Cucumis sativus]	[more]
XP_031741711.1	4.6e-36	49.72	uncharacterized protein LOC116403906 [Cucumis sativus]	[more]
KAA0060812.1	7.8e-36	49.72	transposase [Cucumis melo var. makuwa] >TYK07546.1 transposase [Cucumis melo var...	[more]
TYK30264.1	7.8e-36	49.72	transposase [Cucumis melo var. makuwa]	[more]
TYK08445.1	7.8e-36	49.72	transposase [Cucumis melo var. makuwa]	[more]

BLAST of Lcy07g004410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025452	Domain of unknown function DUF4218	PFAM	PF13960	DUF4218	coord: 71..111 e-value: 3.0E-14 score: 52.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g004410.1	Lcy07g004410.1	mRNA