Lcy07g003350 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g003350
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr07: 14579647 .. 14580009 (-)
RNA-Seq ExpressionLcy07g003350
SyntenyLcy07g003350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGTCCAAATGCTAATGTGGATCTAGTCCAAAAGGCCAAGGATGTTTTGCAGGTTAACTTCACGGAAAGCTTAGGGCAATATCTTGGGCTTCCTTCGCAGAACGCTCGGAAGAAGAAGGAAATTTTCAACAATATTAAAGATCGAGTTTGGAGAGCATTACAAGGATGGAAAGGACGCTTTTTCTCAGCTACAGGAAGAGAGATCCTGATAAAAGCAGTGGCTCAAGCCATTCCAAACTACGCTATGAATTGTTTTAAATTTCCTGTGTCATTAACTAATGAGTTAAATTCAATGTGTGCTAGGTTCTGGTGGGGAGCAGGGGAGACAGAGAGAAGGATTCATTGGAAGAGTTGGTAA

mRNA sequence

ATGACTAGTCCAAATGCTAATGTGGATCTAGTCCAAAAGGCCAAGGATGTTTTGCAGGTTAACTTCACGGAAAGCTTAGGGCAATATCTTGGGCTTCCTTCGCAGAACGCTCGGAAGAAGAAGGAAATTTTCAACAATATTAAAGATCGAGTTTGGAGAGCATTACAAGGATGGAAAGGACGCTTTTTCTCAGCTACAGGAAGAGAGATCCTGATAAAAGCAGTGGCTCAAGCCATTCCAAACTACGCTATGAATTGTTTTAAATTTCCTGTGTCATTAACTAATGAGTTAAATTCAATGTGTGCTAGGTTCTGGTGGGGAGCAGGGGAGACAGAGAGAAGGATTCATTGGAAGAGTTGGTAA

Coding sequence (CDS)

ATGACTAGTCCAAATGCTAATGTGGATCTAGTCCAAAAGGCCAAGGATGTTTTGCAGGTTAACTTCACGGAAAGCTTAGGGCAATATCTTGGGCTTCCTTCGCAGAACGCTCGGAAGAAGAAGGAAATTTTCAACAATATTAAAGATCGAGTTTGGAGAGCATTACAAGGATGGAAAGGACGCTTTTTCTCAGCTACAGGAAGAGAGATCCTGATAAAAGCAGTGGCTCAAGCCATTCCAAACTACGCTATGAATTGTTTTAAATTTCCTGTGTCATTAACTAATGAGTTAAATTCAATGTGTGCTAGGTTCTGGTGGGGAGCAGGGGAGACAGAGAGAAGGATTCATTGGAAGAGTTGGTAA

Protein sequence

MTSPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRFFSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW
Homology
BLAST of Lcy07g003350 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-08
Identity = 27/89 (30.34%), Postives = 45/89 (50.56%), Query Frame = 0

Query: 32  LPSQNARKKKEIFNNIKDRVWRALQGWKGRFFSATGREILIKAVAQAIPNYAMNCFKFPV 91
           +P    R  K+ F  I +RV   + GW+ +  S  GR  L KAV  ++P ++M+    P 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 92  SLTNELNSMCARFWWGAGETERRIHWKSW 121
           S+ N L+ +   F WG+   +++ H   W
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKW 89

BLAST of Lcy07g003350 vs. ExPASy TrEMBL
Match: A0A6J1CV63 (uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014662 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.4e-34
Identity = 66/120 (55.00%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 1   MTSPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKG 60
           M S N +  +    +  L V  T  +GQYLGLPSQ +R K ++FNNI +RVW+ LQGWK 
Sbjct: 10  MVSRNTSRCVAANIESELHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRVWQFLQGWKE 69

Query: 61  RFFSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 120
           + FS+ G+E+LIKAVAQAIPNY+M+CF+FP++L  E+NS+ ARFWWG+ + E++IHW SW
Sbjct: 70  KLFSSGGKEVLIKAVAQAIPNYSMSCFRFPMNLCKEINSLYARFWWGSNDREKKIHWPSW 129

BLAST of Lcy07g003350 vs. ExPASy TrEMBL
Match: A0A2N9HTH6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42962 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 62/116 (53.45%), Postives = 75/116 (64.66%), Query Frame = 0

Query: 5    NANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRFFS 64
            N +  + Q  K++  V   +S  +YLGLPS   R KK  FN IKDRVW+ + GWK +  S
Sbjct: 1033 NTSATMKQYIKNLFHVLEIKSHEKYLGLPSFIGRSKKAAFNGIKDRVWQKINGWKEKLLS 1092

Query: 65   ATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
              GREILIKAVAQ+IP Y M+CFK P SL NELNSM + FWWG   T R +HW  W
Sbjct: 1093 KAGREILIKAVAQSIPTYLMSCFKLPDSLCNELNSMASNFWWGHKATGRNVHWMKW 1148

BLAST of Lcy07g003350 vs. ExPASy TrEMBL
Match: A0A2N9H567 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34870 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 0

Query: 3    SPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRF 62
            S N + D+       L+   T  LG+YLGLP    R+KK+ F  IK +V + LQGWKG+ 
Sbjct: 1095 SSNTHPDMRHAICTELRTTSTGDLGKYLGLPPIIGRRKKQAFMEIKHKVAKKLQGWKGKL 1154

Query: 63   FSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
             S  GREILIK+VAQAIP + M+CF+ P SL  E+NSM  RFWWG  ETER+IHW+ W
Sbjct: 1155 LSQVGREILIKSVAQAIPVFTMSCFQLPASLCKEINSMVGRFWWGQKETERKIHWQKW 1212

BLAST of Lcy07g003350 vs. ExPASy TrEMBL
Match: A0A803Q328 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.9e-28
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 3   SPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRF 62
           SPN   +L  +   +L +   E++ +YLGLP    R KK+ FN I DRVW  L  W  + 
Sbjct: 617 SPNTTPELQHEIATLLGIPVRETMDKYLGLPQAFGRSKKDAFNYINDRVWSHLNKWNSKV 676

Query: 63  FSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
           FS  G+E+L+K+V QAIP+YAM CFK P S  +++ S+ ARFWWG  ET R+IHWKSW
Sbjct: 677 FSKGGKEVLLKSVVQAIPSYAMACFKLPASFHSKIESLMARFWWGGTETTRKIHWKSW 734

BLAST of Lcy07g003350 vs. ExPASy TrEMBL
Match: A0A803PYQ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 0

Query: 3    SPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRF 62
            SPN   ++      +L +  +++  +YLGLP    R KKE FN IKDRVW  L  W  + 
Sbjct: 1441 SPNTTEEIQTNVAAILGIPVSDTFDKYLGLPQTFGRSKKEAFNYIKDRVWSHLNKWNSKL 1500

Query: 63   FSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
            FS  G+E+L+K+V QAIP+YAM CFK P S  +++ SM ARFWWG  E  R+IHWK W
Sbjct: 1501 FSKGGKEVLLKSVVQAIPSYAMACFKLPASFHSQIESMMARFWWGGTEHNRKIHWKQW 1558

BLAST of Lcy07g003350 vs. NCBI nr
Match: XP_022145148.1 (uncharacterized protein LOC111014662 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 66/120 (55.00%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 1   MTSPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKG 60
           M S N +  +    +  L V  T  +GQYLGLPSQ +R K ++FNNI +RVW+ LQGWK 
Sbjct: 10  MVSRNTSRCVAANIESELHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRVWQFLQGWKE 69

Query: 61  RFFSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 120
           + FS+ G+E+LIKAVAQAIPNY+M+CF+FP++L  E+NS+ ARFWWG+ + E++IHW SW
Sbjct: 70  KLFSSGGKEVLIKAVAQAIPNYSMSCFRFPMNLCKEINSLYARFWWGSNDREKKIHWPSW 129

BLAST of Lcy07g003350 vs. NCBI nr
Match: XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 0

Query: 5   NANVDLVQK--AKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRF 64
           ++N    QK   K  L V   E    YLGLP+   R K + F  IKDRVW+ LQGWKG+ 
Sbjct: 544 SSNTPETQKEWTKATLGVKEVEYFESYLGLPTFIGRAKYQTFAFIKDRVWKKLQGWKGKL 603

Query: 65  FSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
            S  G+E+LIKAVAQ+IP Y M  F+ PV L NEL++MCARFWWG  E ER+IHWKSW
Sbjct: 604 LSRAGKEVLIKAVAQSIPTYTMGVFQLPVKLCNELSAMCARFWWGQVENERKIHWKSW 661

BLAST of Lcy07g003350 vs. NCBI nr
Match: XP_030924923.1 (uncharacterized protein LOC115951949 [Quercus lobata])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 3   SPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRF 62
           S N   +  Q+ K++L V   E    YLGLP+   + K + F+ +KDRVW+ +QGWKG+ 
Sbjct: 785 SSNVEEERRQRIKELLGVKEVERFESYLGLPTLVGQAKYQTFSFLKDRVWKKIQGWKGKL 844

Query: 63  FSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
            S  G+EILIKAVAQ+IP Y M  F+ P+ L  ELN+MCARFWWG  + ER+IHWK W
Sbjct: 845 LSRAGKEILIKAVAQSIPTYTMGVFQLPMKLCEELNAMCARFWWGQIDNERKIHWKKW 902

BLAST of Lcy07g003350 vs. NCBI nr
Match: XP_030931246.1 (uncharacterized protein LOC115957168 [Quercus lobata])

HSP 1 Score: 134.0 bits (336), Expect = 8.4e-28
Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 3   SPNANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRF 62
           S N      ++ K++L V        YLGLP+   R K + F+ +KDR+W+ LQGWKG+ 
Sbjct: 681 SSNTEARHREEIKNMLGVQEVARFESYLGLPTLIGRSKYQTFSFLKDRIWKKLQGWKGKL 740

Query: 63  FSATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
            S  G+E+LIKAVAQ+IP Y M  F  P+ L NELN+MCARFWWG    ER+IHWKSW
Sbjct: 741 LSRAGKEVLIKAVAQSIPTYTMGVFLLPLKLCNELNAMCARFWWGQVGDERKIHWKSW 798

BLAST of Lcy07g003350 vs. NCBI nr
Match: XP_030923826.1 (uncharacterized protein LOC115950728 [Quercus lobata])

HSP 1 Score: 134.0 bits (336), Expect = 8.4e-28
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0

Query: 5   NANVDLVQKAKDVLQVNFTESLGQYLGLPSQNARKKKEIFNNIKDRVWRALQGWKGRFFS 64
           N      ++  ++L V        YLGLP+   R K + F+ +KDRVW+ LQGWKG+  S
Sbjct: 587 NTEASHKERIINLLGVKEVARFESYLGLPTLIGRSKYQTFSFLKDRVWKKLQGWKGKMLS 646

Query: 65  ATGREILIKAVAQAIPNYAMNCFKFPVSLTNELNSMCARFWWGAGETERRIHWKSW 121
             G+E+LIKAVAQ+IP Y M  F+ PV L NELN+MCARFWWG    ER+IHWKSW
Sbjct: 647 KAGKEVLIKAVAQSIPTYTMGVFQLPVKLCNELNAMCARFWWGQVGDERKIHWKSW 702

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F67.6e-0830.34Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A6J1CV636.4e-3455.00uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A2N9HTH65.3e-2853.45Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9H5675.3e-2852.54Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A803Q3286.9e-2849.15Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PYQ31.2e-2748.31Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022145148.11.3e-3355.00uncharacterized protein LOC111014662 [Momordica charantia][more]
XP_030941688.11.7e-2855.08uncharacterized protein LOC115966628 [Quercus lobata][more]
XP_030924923.11.7e-2850.85uncharacterized protein LOC115951949 [Quercus lobata][more]
XP_030931246.18.4e-2850.85uncharacterized protein LOC115957168 [Quercus lobata][more]
XP_030923826.18.4e-2851.72uncharacterized protein LOC115950728 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 3..119
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 3..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g003350.1Lcy07g003350.1mRNA