Lcy07g002910 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g002910
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr07: 11441086 .. 11441922 (-)
RNA-Seq Expression	Lcy07g002910
Synteny	Lcy07g002910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAATATCATTGTGGGAGATGATCTCGCATTATCTAAAGGAAGAGGAACTCAAAGATGCAGTGATTTTAATTTGGAAATTGTGGGAGTACCGAAACAGAATCTCCTTGAGTGGAGCCAAAGCAGTTTCAGATCAATGCAAAAAAGAAATTGAAGCAGCCATCTTAGAACATGGGAGAAAGGAGCTTACCTTACCGGCGGAATGCAGCACGGAGAACCTCCGGAGTCCGGCGTTGTGGAAGAGCCCCCCCTCTGGCACCCTGAAATTAAATACGGACGCCTCTTGGTGCCGTTCGGCGAGTGCGGACGGGTTGGGCTGGACGATCCGAGACTCCGGCAGATCTCTGGTGTTTGCGGGAGCAAAACCCATTAGGAAGGAAATGCCCATTCTATTTTTGGAAGCTTTGGCTATGAAGGAGGGTTTAGAGGCGTTTTTTACCTGGTGGAGAGACTCGCCTCGCGTGCTGACAGTGGAATCGGACTCCCAAATTCTGATCAAGCTGCTCAATGGTCTAGCTTCGGATCTCTCTGAAACCAAATTGGTGGTGGACGATATTGGCAAGATGGCGAGAGACCTAAGCATATCAACGTTCGTTTGGTGCCCAAGAAGCTGCAATCGGGCAGCCCATCGACTGGCAGTCGAAGCCTCCAAAACCGTGTCGATGCCCTCTCTATCGAACGGTTTTGTTTTTGGTCCAGAGGATCATGTTTTTTGTGTTTTCCCCAATTCCTCCTCTGTGGAGGACTTGTATTCTTTTGGTGGGCAAGCTGAAGCCCATGGCTGGCTCTCCTCTATTATAAATGAGGAAGCCAGATGTAGTTCTGGTAGTTGA

mRNA sequence

ATGGAAGCAATATCATTGTGGGAGATGATCTCGCATTATCTAAAGGAAGAGGAACTCAAAGATGCAGTGATTTTAATTTGGAAATTGTGGGAGTACCGAAACAGAATCTCCTTGAGTGGAGCCAAAGCAGTTTCAGATCAATGCAAAAAAGAAATTGAAGCAGCCATCTTAGAACATGGGAGAAAGGAGCTTACCTTACCGGCGGAATGCAGCACGGAGAACCTCCGGAGTCCGGCGTTGTGGAAGAGCCCCCCCTCTGGCACCCTGAAATTAAATACGGACGCCTCTTGGTGCCGTTCGGCGAGTGCGGACGGGTTGGGCTGGACGATCCGAGACTCCGGCAGATCTCTGGTGTTTGCGGGAGCAAAACCCATTAGGAAGGAAATGCCCATTCTATTTTTGGAAGCTTTGGCTATGAAGGAGGGTTTAGAGGCGTTTTTTACCTGGTGGAGAGACTCGCCTCGCGTGCTGACAGTGGAATCGGACTCCCAAATTCTGATCAAGCTGCTCAATGGTCTAGCTTCGGATCTCTCTGAAACCAAATTGGTGGTGGACGATATTGGCAAGATGGCGAGAGACCTAAGCATATCAACGTTCGTTTGGTGCCCAAGAAGCTGCAATCGGGCAGCCCATCGACTGGCAGTCGAAGCCTCCAAAACCGTGTCGATGCCCTCTCTATCGAACGGTTTTGTTTTTGGTCCAGAGGATCATGTTTTTTGTGTTTTCCCCAATTCCTCCTCTGTGGAGGACTTGTATTCTTTTGGTGGGCAAGCTGAAGCCCATGGCTGGCTCTCCTCTATTATAAATGAGGAAGCCAGATGTAGTTCTGGTAGTTGA

Coding sequence (CDS)

ATGGAAGCAATATCATTGTGGGAGATGATCTCGCATTATCTAAAGGAAGAGGAACTCAAAGATGCAGTGATTTTAATTTGGAAATTGTGGGAGTACCGAAACAGAATCTCCTTGAGTGGAGCCAAAGCAGTTTCAGATCAATGCAAAAAAGAAATTGAAGCAGCCATCTTAGAACATGGGAGAAAGGAGCTTACCTTACCGGCGGAATGCAGCACGGAGAACCTCCGGAGTCCGGCGTTGTGGAAGAGCCCCCCCTCTGGCACCCTGAAATTAAATACGGACGCCTCTTGGTGCCGTTCGGCGAGTGCGGACGGGTTGGGCTGGACGATCCGAGACTCCGGCAGATCTCTGGTGTTTGCGGGAGCAAAACCCATTAGGAAGGAAATGCCCATTCTATTTTTGGAAGCTTTGGCTATGAAGGAGGGTTTAGAGGCGTTTTTTACCTGGTGGAGAGACTCGCCTCGCGTGCTGACAGTGGAATCGGACTCCCAAATTCTGATCAAGCTGCTCAATGGTCTAGCTTCGGATCTCTCTGAAACCAAATTGGTGGTGGACGATATTGGCAAGATGGCGAGAGACCTAAGCATATCAACGTTCGTTTGGTGCCCAAGAAGCTGCAATCGGGCAGCCCATCGACTGGCAGTCGAAGCCTCCAAAACCGTGTCGATGCCCTCTCTATCGAACGGTTTTGTTTTTGGTCCAGAGGATCATGTTTTTTGTGTTTTCCCCAATTCCTCCTCTGTGGAGGACTTGTATTCTTTTGGTGGGCAAGCTGAAGCCCATGGCTGGCTCTCCTCTATTATAAATGAGGAAGCCAGATGTAGTTCTGGTAGTTGA

Protein sequence

MEAISLWEMISHYLKEEELKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGLASDLSETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASKTVSMPSLSNGFVFGPEDHVFCVFPNSSSVEDLYSFGGQAEAHGWLSSIINEEARCSSGS

Homology

[Close]

BLAST of Lcy07g002910 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-18
Identity = 63/210 (30.00%), Postives = 107/210 (50.95%), Query Frame = 0


Query: 16  EEELKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHGRKELTLPAECSTENL 75
           EEE + ++I+ W++WE RN+    G    +   +  I+  I+    +   L  + + ++L
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDL 65

Query: 76  --------RSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRK 135
                    + A WK P S + KLNT+A+W    +  G+GW +RD    ++ A  + IR 
Sbjct: 66  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 125

Query: 136 EMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGLASDLSETKLVVDDI 195
           E  I +LE +A+ EGL A     ++  R + +ESDS   I LL+    D +E   ++++I
Sbjct: 126 ERNITYLEVMAICEGLRAI---RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEI 185

Query: 196 GKMARDLSISTFVWCPRSCNRAAHRLAVEA 218
            +M +D+ I +     R  N+ AH LA  A
Sbjct: 186 WQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy07g002910 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 16  EEELKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHGRKELTLPAECSTENL 75
           EEE + ++I+ W++WE RN+    G  + +   +  I+  I+    ++  L  + + ++L
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDL 65

Query: 76  --------RSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRK 135
                    + A WK P S + KLNTDA+W    +  G+GW +RD    ++ A  + IR 
Sbjct: 66  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 125

Query: 136 EMPILFLEALAMKEGLEAF-----FTWWRDSPRVLTVESDSQILIKLLNGLASDLSETKL 195
           E  I +LE +A+ EGL A          ++  R + +ESDS   I LL+    D +E   
Sbjct: 126 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 185

Query: 196 VVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEA 218
           ++++I +M  D+ I +     R  N+ AH LA  A
Sbjct: 186 LLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy07g002910 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 70/222 (31.53%), Postives = 107/222 (48.20%), Query Frame = 0


Query: 4   ISLWEMISHYLKEEE-----LKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILE 63
           IS W+ +   L   E     ++  V  +W++W+ RN     G +A   +    +   + E
Sbjct: 713 ISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSE 772

Query: 64  -HGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSL 123
               K+   P      +  +P  W  PP G LK+N DA+W       G+GW IRDS   L
Sbjct: 773 FRTAKQDLQPQPLQPVSSPAPLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLL 832

Query: 124 VFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGLASDL 183
           + AG +        + +E LA++  L     +       + VESDSQ  I +LNG A+  
Sbjct: 833 LCAGGQGDLHGSSAIMMELLAIRHALSECANFHLTD---IIVESDSQKGILMLNGRATVD 892

Query: 184 SETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASK 220
           S+ + +V DI ++   LS  +FV+ PRSCN+AAH +A   SK
Sbjct: 893 SDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFVSK 931

[Close]

BLAST of Lcy07g002910 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 72/226 (31.86%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 4    ISLWEMISHYLKEEE-----LKDAVILIWKLWEYRNRISLSGAKAVSDQ-----CKKEIE 63
            IS W+ +   L   E     ++  V  +W++W+ RN     G +A   +      K+  E
Sbjct: 1041 ISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSE 1100

Query: 64   AAILEHGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDS 123
                +H  ++L  P      +  +P  W  P  G LK+N DA+W       G+GW IRDS
Sbjct: 1101 FRTAKHDLQDLQ-PQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDS 1160

Query: 124  GRSLVFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGL 183
               L+ AG +        + +E LA++  L     +       + VESDSQ  I +LNG 
Sbjct: 1161 FGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHLTD---IIVESDSQKGILMLNGR 1220

Query: 184  ASDLSETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASK 220
            A+  S+ + +V DI ++   LS  +FV+ PRSCN+AAH +A  ASK
Sbjct: 1221 ATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFASK 1262

[Close]

BLAST of Lcy07g002910 vs. ExPASy TrEMBL
Match: A0A6J5UF50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 72/226 (31.86%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 4   ISLWEMISHYLKEEE-----LKDAVILIWKLWEYRNRISLSGAKAVSDQ-----CKKEIE 63
           IS W+ +   L   E     ++  V  +W++W+ RN     G +A   +      K+  E
Sbjct: 173 ISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSE 232

Query: 64  AAILEHGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDS 123
               +H  ++L  P      +  +P  W  P  G LK+N DA+W       G+GW IRDS
Sbjct: 233 FRTAKHDLQDLQ-PQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDS 292

Query: 124 GRSLVFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGL 183
              L+ AG +        + +E LA++  L     +       + VESDSQ  I +LNG 
Sbjct: 293 FGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHLTD---IIVESDSQKGILMLNGR 352

Query: 184 ASDLSETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASK 220
           A+  S+ + +V DI ++   LS  +FV+ PRSCN+AAH +A  ASK
Sbjct: 353 ATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFASK 394

[Close]

BLAST of Lcy07g002910 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-18
Identity = 63/210 (30.00%), Postives = 107/210 (50.95%), Query Frame = 0


Query: 16  EEELKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHGRKELTLPAECSTENL 75
           EEE + ++I+ W++WE RN+    G    +   +  I+  I+    +   L  + + ++L
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDL 65

Query: 76  --------RSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRK 135
                    + A WK P S + KLNT+A+W    +  G+GW +RD    ++ A  + IR 
Sbjct: 66  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 125

Query: 136 EMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGLASDLSETKLVVDDI 195
           E  I +LE +A+ EGL A     ++  R + +ESDS   I LL+    D +E   ++++I
Sbjct: 126 ERNITYLEVMAICEGLRAI---RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEI 185

Query: 196 GKMARDLSISTFVWCPRSCNRAAHRLAVEA 218
            +M +D+ I +     R  N+ AH LA  A
Sbjct: 186 WQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy07g002910 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 4.8e-18
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 16  EEELKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHGRKELTLPAECSTENL 75
           EEE + ++I+ W++WE RN+    G  + +   +  I+  I+    ++  L  + + ++L
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDL 65

Query: 76  --------RSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRK 135
                    + A WK P S + KLNTDA+W    +  G+GW +RD    ++ A  + IR 
Sbjct: 66  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 125

Query: 136 EMPILFLEALAMKEGLEAF-----FTWWRDSPRVLTVESDSQILIKLLNGLASDLSETKL 195
           E  I +LE +A+ EGL A          ++  R + +ESDS   I LL+    D +E   
Sbjct: 126 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 185

Query: 196 VVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEA 218
           ++++I +M  D+ I +     R  N+ AH LA  A
Sbjct: 186 LLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy07g002910 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 72/226 (31.86%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 4    ISLWEMISHYLKEEE-----LKDAVILIWKLWEYRNRISLSGAKAVSDQ-----CKKEIE 63
            IS W+ +   L   E     ++  V  +W++W+ RN     G +A   +      K+  E
Sbjct: 1041 ISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSE 1100

Query: 64   AAILEHGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDS 123
                +H  ++L  P      +  +P  W  P  G LK+N DA+W       G+GW IRDS
Sbjct: 1101 FRTAKHDLQDLQ-PQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDS 1160

Query: 124  GRSLVFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGL 183
               L+ AG +        + +E LA++  L     +       + VESDSQ  I +LNG 
Sbjct: 1161 FGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHLTD---IIVESDSQKGILMLNGR 1220

Query: 184  ASDLSETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASK 220
            A+  S+ + +V DI ++   LS  +FV+ PRSCN+AAH +A  ASK
Sbjct: 1221 ATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFASK 1262

[Close]

BLAST of Lcy07g002910 vs. NCBI nr
Match: CAB4274761.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 72/226 (31.86%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 4   ISLWEMISHYLKEEE-----LKDAVILIWKLWEYRNRISLSGAKAVSDQ-----CKKEIE 63
           IS W+ +   L   E     ++  V  +W++W+ RN     G +A   +      K+  E
Sbjct: 173 ISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSE 232

Query: 64  AAILEHGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDS 123
               +H  ++L  P      +  +P  W  P  G LK+N DA+W       G+GW IRDS
Sbjct: 233 FRTAKHDLQDLQ-PQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDS 292

Query: 124 GRSLVFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGL 183
              L+ AG +        + +E LA++  L     +       + VESDSQ  I +LNG 
Sbjct: 293 FGLLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHLTD---IIVESDSQKGILMLNGR 352

Query: 184 ASDLSETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASK 220
           A+  S+ + +V DI ++   LS  +FV+ PRSCN+AAH +A  ASK
Sbjct: 353 ATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFASK 394

[Close]

BLAST of Lcy07g002910 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 70/222 (31.53%), Postives = 107/222 (48.20%), Query Frame = 0


Query: 4   ISLWEMISHYLKEEE-----LKDAVILIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILE 63
           IS W+ +   L   E     ++  V  +W++W+ RN     G +A   +    +   + E
Sbjct: 713 ISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSE 772

Query: 64  -HGRKELTLPAECSTENLRSPALWKSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSL 123
               K+   P      +  +P  W  PP G LK+N DA+W       G+GW IRDS   L
Sbjct: 773 FRTAKQDLQPQPLQPVSSPAPLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLL 832

Query: 124 VFAGAKPIRKEMPILFLEALAMKEGLEAFFTWWRDSPRVLTVESDSQILIKLLNGLASDL 183
           + AG +        + +E LA++  L     +       + VESDSQ  I +LNG A+  
Sbjct: 833 LCAGGQGDLHGSSAIMMELLAIRHALSECANFHLTD---IIVESDSQKGILMLNGRATVD 892

Query: 184 SETKLVVDDIGKMARDLSISTFVWCPRSCNRAAHRLAVEASK 220
           S+ + +V DI ++   LS  +FV+ PRSCN+AAH +A   SK
Sbjct: 893 SDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFVSK 931

[Close]

BLAST of Lcy07g002910 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-15
Identity = 57/196 (29.08%), Postives = 93/196 (47.45%), Query Frame = 0


Query: 25  LIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHGRKELTLPAECSTE---NLRSPALW 84
           L+W+LW+ RN +   G +  + +  +  E  + E   +  T    C T+   N  S   W
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEW--RIRTEAESCGTKPQVNRSSCGRW 422

Query: 85  KSPPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRKEMPILFLEALAMKE 144
           + PP   +K NTDA+W R     G+GW +R+    + + GA+ + K   +L  E  AM+ 
Sbjct: 423 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR- 482

Query: 145 GLEAFFTWWRDSPRVLTVESDSQILIKLLNGLASDLSETKLVVDDIGKMARDLSISTFVW 204
              A  +  R     +  ESDSQ+LI++LN         K  + D+ ++    +   FV+
Sbjct: 483 --WAVLSLSRFQYNYVIFESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLSQFTEVKFVF 542

Query: 205 CPRSCNRAAHRLAVEA 218
            PR  N  A R+A E+
Sbjct: 543 IPREGNTLAERVARES 552

[Close]

BLAST of Lcy07g002910 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.9e-14
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 25  LIWKLWEYRNRISLSGAKAVSDQCKKEIEAAILEHG-RKELTLPAECSTENLRSPALWKS 84
           L+W+LW+ RN +   G +  + +  +       E   R+EL   A            WK+
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKA 139

Query: 85  PPSGTLKLNTDASWCRSASADGLGWTIRDSGRSLVFAGAKPIRKEMPILFLEALAMKEGL 144
           PP   +K NTDA+W       G+GW +R+    +++ GA+ + +   +L  E  A++   
Sbjct: 140 PPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALR--- 199

Query: 145 EAFFTWWRDSPRVLTVESDSQILIKLLNGLASDLSET-KLVVDDIGKMARDLSISTFVWC 204
            A  T  R + + +  ESD+Q L+ LLN  + D   T +  ++DI ++        F + 
Sbjct: 200 WAVLTMSRFNYKRIIFESDAQALVNLLN--SDDFWPTLQPALEDIQQLLHHFEEVKFEFT 259

Query: 205 PRSCNRAAHRLAVEA 218
           PR  N+ A R+A E+
Sbjct: 260 PRGGNKVADRIARES 269

The following BLAST results are available for this feature:

BLAST of Lcy07g002910 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g002910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP26	1.0e-18	30.00	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	2.3e-18	29.77	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J5WPU6	4.4e-17	31.53	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UE59	4.4e-17	31.86	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UF50	4.4e-17	31.86	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 S...	[more]

BLAST of Lcy07g002910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143535.1	2.1e-18	30.00	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	4.8e-18	29.77	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
CAB4274760.1	9.0e-17	31.86	unnamed protein product [Prunus armeniaca]	[more]
CAB4274761.1	9.0e-17	31.86	unnamed protein product [Prunus armeniaca]	[more]
CAB4303756.1	9.0e-17	31.53	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lcy07g002910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.4e-15	29.08	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	9.9e-14	27.69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 92..216 e-value: 1.3E-17 score: 63.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 88..223 e-value: 1.2E-11 score: 46.7
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 76..220
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 91..214 e-value: 3.9978E-18 score: 76.1988
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 88..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g002910.1	Lcy07g002910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity